RNA–Protein interactions for RNA: ENST00000503492.5

PCDH1-204, Transcript of protocadherin 1, humanhuman

TSL 5 BASIC

Gene PCDH1, Length 2,373 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PCDH1-204ENST00000503492 JCADQ9P266 1359 aa27.03■■□□□ 1.92
PCDH1-204ENST00000503492 KLHL40Q2TBA0 621 aa27.03■■□□□ 1.92
PCDH1-204ENST00000503492 SYTL4Q96C24 671 aaPredicted RBP27.03■■□□□ 1.92
PCDH1-204ENST00000503492 NEUROD6Q96NK8 337 aa27.03■■□□□ 1.92
PCDH1-204ENST00000503492 CCDC9Q9Y3X0 531 aaKnown RBP27.03■■□□□ 1.92
PCDH1-204ENST00000503492 SLC27A2O14975 620 aa27.02■■□□□ 1.92
PCDH1-204ENST00000503492 PCCAP05165 728 aaPredicted RBP27.02■■□□□ 1.92
PCDH1-204ENST00000503492 ZKSCAN1P17029 563 aaPredicted RBP27.02■■□□□ 1.92
PCDH1-204ENST00000503492 TIMM10P62072 90 aa27.02■■□□□ 1.92
PCDH1-204ENST00000503492 CHAMP1Q96JM3 812 aa27.02■■□□□ 1.92
PCDH1-204ENST00000503492 PUS3Q9BZE2 481 aaKnown RBP27.02■■□□□ 1.92
PCDH1-204ENST00000503492 DDX49Q9Y6V7 483 aaKnown RBP27.02■■□□□ 1.92
PCDH1-204ENST00000503492 RFX7Q2KHR2 1363 aa27.02■■□□□ 1.92
PCDH1-204ENST00000503492 CIAO1O76071 339 aa27.02■■□□□ 1.92
PCDH1-204ENST00000503492 VPS53Q5VIR6 699 aa27.02■■□□□ 1.92
PCDH1-204ENST00000503492 GIGYF2Q6Y7W6 1299 aaKnown RBP27.02■■□□□ 1.92
PCDH1-204ENST00000503492 FAM89AQ96GI7 184 aa27.02■■□□□ 1.92
PCDH1-204ENST00000503492 LTBP4Q8N2S1 1624 aa27.02■■□□□ 1.92
PCDH1-204ENST00000503492 HLFQ16534 295 aa27.01■■□□□ 1.92
PCDH1-204ENST00000503492 PDRG1Q9NUG6 133 aa27.01■■□□□ 1.92
PCDH1-204ENST00000503492 CYP46A1Q9Y6A2 500 aa27.01■■□□□ 1.92
PCDH1-204ENST00000503492 ZNF609O15014 1411 aa27■■□□□ 1.91
PCDH1-204ENST00000503492 ADAMTS2O95450 1211 aa27■■□□□ 1.91
PCDH1-204ENST00000503492 CHGBP05060 677 aa27■■□□□ 1.91
PCDH1-204ENST00000503492 XRCC6P12956 609 aaKnown RBP eCLIP27■■□□□ 1.91
PCDH1-204ENST00000503492 TAF5LO75529 589 aa27■■□□□ 1.91
PCDH1-204ENST00000503492 PRIM1P49642 420 aaKnown RBP27■■□□□ 1.91
PCDH1-204ENST00000503492 DDX46Q7L014 1031 aaKnown RBP27■■□□□ 1.91
PCDH1-204ENST00000503492 ZBTB38Q8NAP3 1195 aaPredicted RBP27■■□□□ 1.91
PCDH1-204ENST00000503492 PLA2G12BQ9BX93 195 aa27■■□□□ 1.91
PCDH1-204ENST00000503492 CCDC57Q2TAC2 916 aa26.99■■□□□ 1.91
PCDH1-204ENST00000503492 ZBTB1Q9Y2K1 713 aa26.99■■□□□ 1.91
PCDH1-204ENST00000503492 RPAP1Q9BWH6 1393 aaPredicted RBP26.99■■□□□ 1.91
PCDH1-204ENST00000503492 LARGE1O95461 756 aa26.99■■□□□ 1.91
PCDH1-204ENST00000503492 DOT1LQ8TEK3 1739 aa26.97■■□□□ 1.91
PCDH1-204ENST00000503492 A0A1B0GUL7 405 aa26.97■■□□□ 1.91
PCDH1-204ENST00000503492 PRPF40AO75400 957 aaKnown RBP26.97■■□□□ 1.91
PCDH1-204ENST00000503492 COL9A3Q14050 684 aaPredicted RBP26.97■■□□□ 1.91
PCDH1-204ENST00000503492 KBTBD3Q8NAB2 608 aa26.97■■□□□ 1.91
PCDH1-204ENST00000503492 TAF6LQ9Y6J9 622 aa26.97■■□□□ 1.91
PCDH1-204ENST00000503492 SPATA31A1Q5TZJ5 1347 aa26.97■■□□□ 1.91
PCDH1-204ENST00000503492 CSF1RP07333 972 aa26.97■■□□□ 1.91
PCDH1-204ENST00000503492 GPTP24298 496 aa26.97■■□□□ 1.91
PCDH1-204ENST00000503492 NLRP10Q86W26 655 aa26.97■■□□□ 1.91
PCDH1-204ENST00000503492 SYNE4Q8N205 404 aa26.97■■□□□ 1.91
PCDH1-204ENST00000503492 CCDC85AQ96PX6 553 aaPredicted RBP26.97■■□□□ 1.91
PCDH1-204ENST00000503492 NRAPQ86VF7 1730 aa26.96■■□□□ 1.91
PCDH1-204ENST00000503492 RNF20Q5VTR2 975 aa26.96■■□□□ 1.91
PCDH1-204ENST00000503492 SEC62Q99442 399 aaKnown RBP26.96■■□□□ 1.91
PCDH1-204ENST00000503492 PHLPP1O60346 1717 aa26.96■■□□□ 1.91
PCDH1-204ENST00000503492 GAS2L3Q86XJ1 694 aa26.95■■□□□ 1.91
PCDH1-204ENST00000503492 PSMA5P28066 241 aa26.95■■□□□ 1.9
PCDH1-204ENST00000503492 USPL1Q5W0Q7 1092 aa26.95■■□□□ 1.9
PCDH1-204ENST00000503492 CDCA7Q9BWT1 371 aaPredicted RBP26.95■■□□□ 1.9
PCDH1-204ENST00000503492 CEP126Q9P2H0 1117 aa26.95■■□□□ 1.9
PCDH1-204ENST00000503492 ISY1Q9ULR0 285 aaKnown RBP26.95■■□□□ 1.9
PCDH1-204ENST00000503492 CCDC129Q6ZRS4 1044 aa26.94■■□□□ 1.9
PCDH1-204ENST00000503492 PAG1Q9NWQ8 432 aa26.94■■□□□ 1.9
PCDH1-204ENST00000503492 PALLDQ8WX93 1383 aa26.94■■□□□ 1.9
PCDH1-204ENST00000503492 CDHR2Q9BYE9 1310 aa26.94■■□□□ 1.9
PCDH1-204ENST00000503492 GOLIM4O00461 696 aa26.94■■□□□ 1.9
PCDH1-204ENST00000503492 MRE11P49959 708 aa26.94■■□□□ 1.9
PCDH1-204ENST00000503492 HSP90AB3PQ58FF7 597 aa26.94■■□□□ 1.9
PCDH1-204ENST00000503492 FBXO3Q9UK99 471 aa26.94■■□□□ 1.9
PCDH1-204ENST00000503492 ZSCAN21Q9Y5A6 473 aaPredicted RBP26.94■■□□□ 1.9
PCDH1-204ENST00000503492 MCMDC2Q4G0Z9 681 aa26.93■■□□□ 1.9
PCDH1-204ENST00000503492 ZSCAN31Q96LW9 406 aaPredicted RBP26.93■■□□□ 1.9
PCDH1-204ENST00000503492 TSGA10IPQ3SY00 556 aa26.93■■□□□ 1.9
PCDH1-204ENST00000503492 HMG20BQ9P0W2 317 aa26.93■■□□□ 1.9
PCDH1-204ENST00000503492 THRAP3Q9Y2W1 955 aaKnown RBP26.93■■□□□ 1.9
PCDH1-204ENST00000503492 WDR33Q9C0J8 1336 aaKnown RBP26.92■■□□□ 1.9
PCDH1-204ENST00000503492 ANKRD36CQ5JPF3 1778 aa26.92■■□□□ 1.9
PCDH1-204ENST00000503492 DDB1Q16531 1140 aa26.92■■□□□ 1.9
PCDH1-204ENST00000503492 GRPEL1Q9HAV7 217 aa26.92■■□□□ 1.9
PCDH1-204ENST00000503492 CCDC83Q8IWF9 413 aa26.92■■□□□ 1.9
PCDH1-204ENST00000503492 SH2B1Q9NRF2 756 aaPredicted RBP26.92■■□□□ 1.9
PCDH1-204ENST00000503492 IFIT1P09914 478 aaKnown RBP26.91■■□□□ 1.9
PCDH1-204ENST00000503492 IFIT5Q13325 482 aaKnown RBP26.91■■□□□ 1.9
PCDH1-204ENST00000503492 PANK2Q9BZ23 570 aa26.91■■□□□ 1.9
PCDH1-204ENST00000503492 SH3TC1Q8TE82 1336 aa26.91■■□□□ 1.9
PCDH1-204ENST00000503492 IL6STP40189 918 aaPredicted RBP26.91■■□□□ 1.9
PCDH1-204ENST00000503492 ST3GAL1Q11201 340 aa26.91■■□□□ 1.9
PCDH1-204ENST00000503492 ME3Q16798 604 aa26.91■■□□□ 1.9
PCDH1-204ENST00000503492 BLOC1S2Q6QNY1 142 aa26.91■■□□□ 1.9
PCDH1-204ENST00000503492 GPT2Q8TD30 523 aa26.91■■□□□ 1.9
PCDH1-204ENST00000503492 SMC3Q9UQE7 1217 aa26.91■■□□□ 1.9
PCDH1-204ENST00000503492 NUP98P52948 1817 aa26.9■■□□□ 1.9
PCDH1-204ENST00000503492 NCLP19338 710 aaKnown RBP26.9■■□□□ 1.9
PCDH1-204ENST00000503492 TBC1D2BQ9UPU7 963 aa26.9■■□□□ 1.9
PCDH1-204ENST00000503492 SLFNL1Q499Z3 407 aa26.9■■□□□ 1.9
PCDH1-204ENST00000503492 TAF7LQ5H9L4 462 aa26.9■■□□□ 1.9
PCDH1-204ENST00000503492 DZIP3Q86Y13 1208 aaKnown RBP26.9■■□□□ 1.9
PCDH1-204ENST00000503492 TPCN1Q9ULQ1 816 aa26.9■■□□□ 1.9
PCDH1-204ENST00000503492 RPS6KB1P23443 525 aa26.89■■□□□ 1.9
PCDH1-204ENST00000503492 CAVIN1Q6NZI2 390 aaKnown RBP26.89■■□□□ 1.9
PCDH1-204ENST00000503492 TTLL11Q8NHH1 800 aa26.89■■□□□ 1.9
PCDH1-204ENST00000503492 ERVV-1B6SEH8 477 aa26.89■■□□□ 1.89
PCDH1-204ENST00000503492 ADORA1P30542 326 aa26.89■■□□□ 1.89
PCDH1-204ENST00000503492 PPIL4Q8WUA2 492 aaKnown RBP eCLIP26.89■■□□□ 1.89
PCDH1-204ENST00000503492 NUTM2BA6NNL0 878 aaPredicted RBP26.88■■□□□ 1.89
Retrieved 100 of 20,778 RNA–protein pairs in 10.4 ms