RNA–Protein interactions for RNA: ENST00000498540.2

TRAF4-212, Transcript of TNF receptor associated factor 4, humanhuman

TSL 3

Gene TRAF4, Length 748 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRAF4-212ENST00000498540 NLRP10Q86W26 655 aa19.34■□□□□ 0.69
TRAF4-212ENST00000498540 SP8Q8IXZ3 490 aa19.34■□□□□ 0.69
TRAF4-212ENST00000498540 MPNDQ8N594 471 aa19.34■□□□□ 0.69
TRAF4-212ENST00000498540 NECTIN2Q92692 538 aa19.34■□□□□ 0.69
TRAF4-212ENST00000498540 DDX60Q8IY21 1712 aaKnown RBP19.34■□□□□ 0.69
TRAF4-212ENST00000498540 CDHR2Q9BYE9 1310 aa19.33■□□□□ 0.69
TRAF4-212ENST00000498540 BBOX1O75936 387 aa19.33■□□□□ 0.68
TRAF4-212ENST00000498540 RAD17O75943 681 aa19.33■□□□□ 0.68
TRAF4-212ENST00000498540 HIRAP54198 1017 aaPredicted RBP19.33■□□□□ 0.68
TRAF4-212ENST00000498540 COPS6Q7L5N1 327 aa19.33■□□□□ 0.68
TRAF4-212ENST00000498540 PNNQ9H307 717 aaKnown RBP19.33■□□□□ 0.68
TRAF4-212ENST00000498540 SHTN1A0MZ66 631 aa19.32■□□□□ 0.68
TRAF4-212ENST00000498540 MAP2K2P36507 400 aa19.32■□□□□ 0.68
TRAF4-212ENST00000498540 RIPK4P57078 832 aa19.32■□□□□ 0.68
TRAF4-212ENST00000498540 AIMP1Q12904 312 aaKnown RBP19.32■□□□□ 0.68
TRAF4-212ENST00000498540 TRPM4Q8TD43 1214 aa19.32■□□□□ 0.68
TRAF4-212ENST00000498540 XAGE3Q8WTP9 111 aa19.32■□□□□ 0.68
TRAF4-212ENST00000498540 BCL2L13Q9BXK5 485 aa19.32■□□□□ 0.68
TRAF4-212ENST00000498540 PGAP2Q9UHJ9 254 aa19.32■□□□□ 0.68
TRAF4-212ENST00000498540 YDJCA8MPS7 323 aa19.31■□□□□ 0.68
TRAF4-212ENST00000498540 GRAPQ13588 217 aa19.31■□□□□ 0.68
TRAF4-212ENST00000498540 HSP90AB3PQ58FF7 597 aa19.31■□□□□ 0.68
TRAF4-212ENST00000498540 DDX46Q7L014 1031 aaKnown RBP19.31■□□□□ 0.68
TRAF4-212ENST00000498540 GRAPLQ8TC17 118 aaPredicted RBP19.31■□□□□ 0.68
TRAF4-212ENST00000498540 ZNF428Q96B54 188 aa19.31■□□□□ 0.68
TRAF4-212ENST00000498540 ZNF408Q9H9D4 720 aa19.31■□□□□ 0.68
TRAF4-212ENST00000498540 TRMT112Q9UI30 125 aaKnown RBP19.31■□□□□ 0.68
TRAF4-212ENST00000498540 SH3TC1Q8TE82 1336 aa19.3■□□□□ 0.68
TRAF4-212ENST00000498540 CASP8AP2Q9UKL3 1982 aa19.3■□□□□ 0.68
TRAF4-212ENST00000498540 CCDC85CA6NKD9 419 aa19.3■□□□□ 0.68
TRAF4-212ENST00000498540 TNIP1Q15025 636 aa19.3■□□□□ 0.68
TRAF4-212ENST00000498540 COL4A1P02462 1669 aa19.3■□□□□ 0.68
TRAF4-212ENST00000498540 TCIRG1Q13488 830 aa19.29■□□□□ 0.68
TRAF4-212ENST00000498540 KRT24Q2M2I5 525 aa19.29■□□□□ 0.68
TRAF4-212ENST00000498540 ZC3H15Q8WU90 426 aaKnown RBP19.29■□□□□ 0.68
TRAF4-212ENST00000498540 HHIPL1Q96JK4 782 aa19.29■□□□□ 0.68
TRAF4-212ENST00000498540 BABAM1Q9NWV8 329 aa19.29■□□□□ 0.68
TRAF4-212ENST00000498540 CNOT7Q9UIV1 285 aaKnown RBP19.29■□□□□ 0.68
TRAF4-212ENST00000498540 TMPOP42166 694 aaKnown RBP19.28■□□□□ 0.68
TRAF4-212ENST00000498540 BRPF1P55201 1214 aaPredicted RBP19.27■□□□□ 0.68
TRAF4-212ENST00000498540 DLK2Q6UY11 383 aa19.27■□□□□ 0.68
TRAF4-212ENST00000498540 CDC37L1Q7L3B6 337 aa19.27■□□□□ 0.68
TRAF4-212ENST00000498540 MICALL2Q8IY33 904 aa19.27■□□□□ 0.68
TRAF4-212ENST00000498540 ZBTB12Q9Y330 459 aaPredicted RBP19.27■□□□□ 0.68
TRAF4-212ENST00000498540 CA12O43570 354 aa19.26■□□□□ 0.67
TRAF4-212ENST00000498540 POLR2AP24928 1970 aaKnown RBP19.25■□□□□ 0.67
TRAF4-212ENST00000498540 LMOD3Q0VAK6 560 aa19.25■□□□□ 0.67
TRAF4-212ENST00000498540 TMC4Q7Z404 712 aa19.25■□□□□ 0.67
TRAF4-212ENST00000498540 USP48Q86UV5 1035 aa19.25■□□□□ 0.67
TRAF4-212ENST00000498540 ZIC5Q96T25 663 aa19.25■□□□□ 0.67
TRAF4-212ENST00000498540 MCOLN1Q9GZU1 580 aa19.25■□□□□ 0.67
TRAF4-212ENST00000498540 CHPF2Q9P2E5 772 aa19.25■□□□□ 0.67
TRAF4-212ENST00000498540 H7C1D1 291 aa19.24■□□□□ 0.67
TRAF4-212ENST00000498540 PSMD14O00487 310 aa19.24■□□□□ 0.67
TRAF4-212ENST00000498540 EGFRP00533 1210 aa19.24■□□□□ 0.67
TRAF4-212ENST00000498540 RGS19P49795 217 aa19.24■□□□□ 0.67
TRAF4-212ENST00000498540 MLLT1Q03111 559 aaPredicted RBP19.24■□□□□ 0.67
TRAF4-212ENST00000498540 SAMD7Q7Z3H4 446 aa19.24■□□□□ 0.67
TRAF4-212ENST00000498540 CELF1Q92879 486 aaKnown RBP19.24■□□□□ 0.67
TRAF4-212ENST00000498540 DBNDD1Q9H9R9 158 aa19.24■□□□□ 0.67
TRAF4-212ENST00000498540 SLC34A2O95436 690 aa19.23■□□□□ 0.67
TRAF4-212ENST00000498540 WASHC4Q2M389 1173 aa19.23■□□□□ 0.67
TRAF4-212ENST00000498540 FAM89AQ96GI7 184 aa19.23■□□□□ 0.67
TRAF4-212ENST00000498540 CHL1O00533 1208 aa19.22■□□□□ 0.67
TRAF4-212ENST00000498540 HUNKP57058 714 aa19.22■□□□□ 0.67
TRAF4-212ENST00000498540 NEUROD2Q15784 382 aa19.22■□□□□ 0.67
TRAF4-212ENST00000498540 TBC1D10BQ4KMP7 808 aaPredicted RBP19.22■□□□□ 0.67
TRAF4-212ENST00000498540 CCDC146Q8IYE0 955 aa19.22■□□□□ 0.67
TRAF4-212ENST00000498540 DPF2Q92785 391 aa19.22■□□□□ 0.67
TRAF4-212ENST00000498540 NSFL1CQ9UNZ2 370 aaKnown RBP19.22■□□□□ 0.67
TRAF4-212ENST00000498540 SCN9AQ15858 1988 aa19.22■□□□□ 0.67
TRAF4-212ENST00000498540 RTL9Q8NET4 1388 aa19.21■□□□□ 0.67
TRAF4-212ENST00000498540 ATP5J2-PTCD1G3V325 749 aa19.21■□□□□ 0.67
TRAF4-212ENST00000498540 RIMBP2O15034 1052 aa19.21■□□□□ 0.67
TRAF4-212ENST00000498540 GPSM2P81274 684 aa19.21■□□□□ 0.67
TRAF4-212ENST00000498540 NOGQ13253 232 aa19.21■□□□□ 0.67
TRAF4-212ENST00000498540 PLBD2Q8NHP8 589 aa19.21■□□□□ 0.67
TRAF4-212ENST00000498540 ISCA1Q9BUE6 129 aa19.21■□□□□ 0.67
TRAF4-212ENST00000498540 KCNQ5Q9NR82 932 aa19.21■□□□□ 0.67
TRAF4-212ENST00000498540 POLLQ9UGP5 575 aa19.21■□□□□ 0.67
TRAF4-212ENST00000498540 LAS1LQ9Y4W2 734 aaKnown RBP19.21■□□□□ 0.67
TRAF4-212ENST00000498540 C6orf229H3BNL8 230 aa19.2■□□□□ 0.66
TRAF4-212ENST00000498540 SF3B3Q15393 1217 aaKnown RBP19.2■□□□□ 0.66
TRAF4-212ENST00000498540 HDGFL1Q5TGJ6 251 aa19.2■□□□□ 0.66
TRAF4-212ENST00000498540 KRT26Q7Z3Y9 468 aa19.2■□□□□ 0.66
TRAF4-212ENST00000498540 CFAP44Q96MT7 982 aa19.2■□□□□ 0.66
TRAF4-212ENST00000498540 ADM5C9JUS6 153 aa19.19■□□□□ 0.66
TRAF4-212ENST00000498540 ECE2O60344 883 aa19.19■□□□□ 0.66
TRAF4-212ENST00000498540 DGKZQ13574 1117 aa19.19■□□□□ 0.66
TRAF4-212ENST00000498540 DOK7Q18PE1 504 aa19.19■□□□□ 0.66
TRAF4-212ENST00000498540 RTL5Q5HYW3 569 aaPredicted RBP19.19■□□□□ 0.66
TRAF4-212ENST00000498540 ANKRD13DQ6ZTN6 518 aa19.19■□□□□ 0.66
TRAF4-212ENST00000498540 TRIM35Q9UPQ4 493 aa19.19■□□□□ 0.66
TRAF4-212ENST00000498540 FAM155AB1AL88 458 aaPredicted RBP19.18■□□□□ 0.66
TRAF4-212ENST00000498540 RBM26Q5T8P6 1007 aaKnown RBP19.18■□□□□ 0.66
TRAF4-212ENST00000498540 GBA2Q9HCG7 927 aaPredicted RBP19.18■□□□□ 0.66
TRAF4-212ENST00000498540 RPS12P25398 132 aaKnown RBP19.17■□□□□ 0.66
TRAF4-212ENST00000498540 RALBP1Q15311 655 aa19.17■□□□□ 0.66
TRAF4-212ENST00000498540 RGMBQ6NW40 437 aa19.17■□□□□ 0.66
TRAF4-212ENST00000498540 DBF4Q9UBU7 674 aaPredicted RBP19.17■□□□□ 0.66
Retrieved 100 of 20,778 RNA–protein pairs in 55.5 ms