RNA–Protein interactions for RNA: ENST00000495090.6

SYNE1-230, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 1 (best) BASIC

Gene SYNE1, Length 1,907 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-230ENST00000495090 FAM173BQ6P4H8 233 aa11.38□□□□□ -0.59
SYNE1-230ENST00000495090 LARP1Q6PKG0 1096 aaKnown RBP11.38□□□□□ -0.59
SYNE1-230ENST00000495090 TSPYL1Q9H0U9 437 aa11.38□□□□□ -0.59
SYNE1-230ENST00000495090 HDAC5Q9UQL6 1122 aa11.38□□□□□ -0.59
SYNE1-230ENST00000495090 TULP1O00294 542 aaPredicted RBP11.37□□□□□ -0.59
SYNE1-230ENST00000495090 TOB2Q14106 344 aaPredicted RBP11.37□□□□□ -0.59
SYNE1-230ENST00000495090 HDGFL1Q5TGJ6 251 aa11.37□□□□□ -0.59
SYNE1-230ENST00000495090 ATL3Q6DD88 541 aa11.37□□□□□ -0.59
SYNE1-230ENST00000495090 EYA1Q99502 592 aa11.37□□□□□ -0.59
SYNE1-230ENST00000495090 ANO10Q9NW15 660 aa11.37□□□□□ -0.59
SYNE1-230ENST00000495090 MED23Q9ULK4 1368 aa11.37□□□□□ -0.59
SYNE1-230ENST00000495090 PSDA5PKW4 1024 aaPredicted RBP11.37□□□□□ -0.59
SYNE1-230ENST00000495090 CYP2C19P33261 490 aa11.37□□□□□ -0.59
SYNE1-230ENST00000495090 IRX5P78411 483 aaPredicted RBP11.37□□□□□ -0.59
SYNE1-230ENST00000495090 KRT32Q14532 448 aa11.37□□□□□ -0.59
SYNE1-230ENST00000495090 TFIP11Q9UBB9 837 aaKnown RBP11.37□□□□□ -0.59
SYNE1-230ENST00000495090 MED1Q15648 1581 aaPredicted RBP11.36□□□□□ -0.59
SYNE1-230ENST00000495090 NBPF7P0C2Y1 421 aaPredicted RBP11.36□□□□□ -0.59
SYNE1-230ENST00000495090 KCNJ4P48050 445 aa11.36□□□□□ -0.59
SYNE1-230ENST00000495090 CCDC93Q567U6 631 aa11.36□□□□□ -0.59
SYNE1-230ENST00000495090 CCDC150Q8NCX0 1101 aa11.36□□□□□ -0.59
SYNE1-230ENST00000495090 DNAAF4Q8WXU2 420 aa11.36□□□□□ -0.59
SYNE1-230ENST00000495090 GTF3C6Q969F1 213 aa11.36□□□□□ -0.59
SYNE1-230ENST00000495090 DNAJC2Q99543 621 aaKnown RBP11.36□□□□□ -0.59
SYNE1-230ENST00000495090 ZNF446Q9NWS9 450 aa11.36□□□□□ -0.59
SYNE1-230ENST00000495090 BECN2A8MW95 431 aa11.35□□□□□ -0.59
SYNE1-230ENST00000495090 IFIT2P09913 472 aaKnown RBP11.35□□□□□ -0.59
SYNE1-230ENST00000495090 CDK11BP21127 795 aaKnown RBP11.35□□□□□ -0.59
SYNE1-230ENST00000495090 OS9Q13438 667 aaPredicted RBP11.35□□□□□ -0.59
SYNE1-230ENST00000495090 C11orf57Q6ZUT1 292 aaPredicted RBP11.35□□□□□ -0.59
SYNE1-230ENST00000495090 DHX40Q8IX18 779 aaKnown RBP11.35□□□□□ -0.59
SYNE1-230ENST00000495090 NOL10Q9BSC4 688 aaKnown RBP11.35□□□□□ -0.59
SYNE1-230ENST00000495090 NAT10Q9H0A0 1025 aaKnown RBP11.35□□□□□ -0.59
SYNE1-230ENST00000495090 PHAXQ9H814 394 aaKnown RBP11.35□□□□□ -0.59
SYNE1-230ENST00000495090 RCOR1Q9UKL0 485 aa11.35□□□□□ -0.59
SYNE1-230ENST00000495090 NWD1Q149M9 1564 aa11.35□□□□□ -0.59
SYNE1-230ENST00000495090 MYH15Q9Y2K3 1946 aa11.35□□□□□ -0.59
SYNE1-230ENST00000495090 ATP8B1O43520 1251 aa11.35□□□□□ -0.59
SYNE1-230ENST00000495090 HDGFP51858 240 aaKnown RBP11.35□□□□□ -0.59
SYNE1-230ENST00000495090 NMIQ13287 307 aaPredicted RBP11.35□□□□□ -0.59
SYNE1-230ENST00000495090 USPL1Q5W0Q7 1092 aa11.35□□□□□ -0.59
SYNE1-230ENST00000495090 NAA16Q6N069 864 aaPredicted RBP11.35□□□□□ -0.59
SYNE1-230ENST00000495090 CEP57L1Q8IYX8 460 aa11.35□□□□□ -0.59
SYNE1-230ENST00000495090 IL17REQ8NFR9 667 aa11.35□□□□□ -0.59
SYNE1-230ENST00000495090 NECTIN2Q92692 538 aa11.35□□□□□ -0.59
SYNE1-230ENST00000495090 BPIFA3Q9BQP9 254 aa11.35□□□□□ -0.59
SYNE1-230ENST00000495090 LLPHQ9BRT6 129 aaKnown RBP11.35□□□□□ -0.59
SYNE1-230ENST00000495090 SIPA1L2Q9P2F8 1722 aaPredicted RBP11.34□□□□□ -0.59
SYNE1-230ENST00000495090 CCP110O43303 1012 aa11.34□□□□□ -0.59
SYNE1-230ENST00000495090 ALDH1L1O75891 902 aa11.34□□□□□ -0.59
SYNE1-230ENST00000495090 SNW1Q13573 536 aaKnown RBP11.34□□□□□ -0.59
SYNE1-230ENST00000495090 ARID5BQ14865 1188 aa11.34□□□□□ -0.59
SYNE1-230ENST00000495090 FHOD1Q9Y613 1164 aa11.34□□□□□ -0.59
SYNE1-230ENST00000495090 RFX7Q2KHR2 1363 aa11.34□□□□□ -0.59
SYNE1-230ENST00000495090 CEMIPQ8WUJ3 1361 aa11.34□□□□□ -0.59
SYNE1-230ENST00000495090 NRDCO43847 1150 aa11.33□□□□□ -0.6
SYNE1-230ENST00000495090 CCDC73Q6ZRK6 1079 aa11.33□□□□□ -0.6
SYNE1-230ENST00000495090 FILIP1Q7Z7B0 1213 aa11.33□□□□□ -0.6
SYNE1-230ENST00000495090 SMARCC2Q8TAQ2 1214 aa11.33□□□□□ -0.6
SYNE1-230ENST00000495090 SRRTQ9BXP5 876 aaKnown RBP11.33□□□□□ -0.6
SYNE1-230ENST00000495090 USP16Q9Y5T5 823 aa11.33□□□□□ -0.6
SYNE1-230ENST00000495090 ROBO2Q9HCK4 1378 aa11.33□□□□□ -0.6
SYNE1-230ENST00000495090 USP54Q70EL1 1684 aa11.33□□□□□ -0.6
SYNE1-230ENST00000495090 KDM3BQ7LBC6 1761 aa11.33□□□□□ -0.6
SYNE1-230ENST00000495090 ZRANB2O95218 330 aaKnown RBP eCLIP11.33□□□□□ -0.6
SYNE1-230ENST00000495090 ADD1P35611 737 aaKnown RBP11.33□□□□□ -0.6
SYNE1-230ENST00000495090 FAM160A1Q05DH4 1040 aa11.33□□□□□ -0.6
SYNE1-230ENST00000495090 E4F1Q66K89 784 aaPredicted RBP11.33□□□□□ -0.6
SYNE1-230ENST00000495090 ENGASEQ8NFI3 743 aa11.33□□□□□ -0.6
SYNE1-230ENST00000495090 BRF1Q92994 677 aa11.33□□□□□ -0.6
SYNE1-230ENST00000495090 FAM227BQ96M60 508 aa11.33□□□□□ -0.6
SYNE1-230ENST00000495090 ARGLU1Q9NWB6 273 aaPredicted RBP11.33□□□□□ -0.6
SYNE1-230ENST00000495090 PHLPP2Q6ZVD8 1323 aa11.33□□□□□ -0.6
SYNE1-230ENST00000495090 MRC1P22897 1456 aa11.32□□□□□ -0.6
SYNE1-230ENST00000495090 SLIT1O75093 1534 aa11.32□□□□□ -0.6
SYNE1-230ENST00000495090 H3BQV1 296 aa11.32□□□□□ -0.6
SYNE1-230ENST00000495090 KINO60870 393 aaKnown RBP11.32□□□□□ -0.6
SYNE1-230ENST00000495090 TPM1P09493 284 aa11.32□□□□□ -0.6
SYNE1-230ENST00000495090 PNMA6AP0CW24 399 aaPredicted RBP11.32□□□□□ -0.6
SYNE1-230ENST00000495090 CLCN6P51797 869 aa11.32□□□□□ -0.6
SYNE1-230ENST00000495090 TEX35Q5T0J7 233 aa11.32□□□□□ -0.6
SYNE1-230ENST00000495090 IFFO2Q5TF58 517 aa11.32□□□□□ -0.6
SYNE1-230ENST00000495090 NBPF11Q86T75 865 aa11.32□□□□□ -0.6
SYNE1-230ENST00000495090 CCAR1Q8IX12 1150 aaKnown RBP11.32□□□□□ -0.6
SYNE1-230ENST00000495090 PPP1R13BQ96KQ4 1090 aa11.32□□□□□ -0.6
SYNE1-230ENST00000495090 TRMT1Q9NXH9 659 aaKnown RBP11.32□□□□□ -0.6
SYNE1-230ENST00000495090 ZKSCAN7Q9P0L1 754 aaPredicted RBP11.32□□□□□ -0.6
SYNE1-230ENST00000495090 NOL12Q9UGY1 213 aaKnown RBP eCLIP11.32□□□□□ -0.6
SYNE1-230ENST00000495090 UCHL5Q9Y5K5 329 aaKnown RBP eCLIP11.32□□□□□ -0.6
SYNE1-230ENST00000495090 V9GYY5 206 aaPredicted RBP11.32□□□□□ -0.6
SYNE1-230ENST00000495090 NCAPD2Q15021 1401 aa11.32□□□□□ -0.6
SYNE1-230ENST00000495090 A0A0D9SFI3 127 aa11.31□□□□□ -0.6
SYNE1-230ENST00000495090 PI4KAP2A4QPH2 592 aa11.31□□□□□ -0.6
SYNE1-230ENST00000495090 DTNBO60941 627 aa11.31□□□□□ -0.6
SYNE1-230ENST00000495090 AMPHP49418 695 aa11.31□□□□□ -0.6
SYNE1-230ENST00000495090 TPM4P67936 248 aa11.31□□□□□ -0.6
SYNE1-230ENST00000495090 MUM1L1Q5H9M0 696 aa11.31□□□□□ -0.6
SYNE1-230ENST00000495090 AACSQ86V21 672 aa11.31□□□□□ -0.6
SYNE1-230ENST00000495090 PI4KAP1Q8N8J0 262 aa11.31□□□□□ -0.6
SYNE1-230ENST00000495090 ZNF396Q96N95 335 aaPredicted RBP11.31□□□□□ -0.6
Retrieved 100 of 20,778 RNA–protein pairs in 19.3 ms