RNA–Protein interactions for RNA: ENST00000494800.1

HDAC4-211, Transcript of histone deacetylase 4, humanhuman

TSL 5

Gene HDAC4, Length 451 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC4-211ENST00000494800 CCDC152Q4G0S7 254 aa22.48■■□□□ 1.19
HDAC4-211ENST00000494800 CDHR2Q9BYE9 1310 aa22.48■■□□□ 1.19
HDAC4-211ENST00000494800 DDX60Q8IY21 1712 aaKnown RBP22.48■■□□□ 1.19
HDAC4-211ENST00000494800 LAMB2P55268 1798 aa22.48■■□□□ 1.19
HDAC4-211ENST00000494800 CCDC88AQ3V6T2 1871 aa22.47■■□□□ 1.19
HDAC4-211ENST00000494800 VEGFAP15692 232 aaPredicted RBP22.47■■□□□ 1.19
HDAC4-211ENST00000494800 SLFN5Q08AF3 891 aa22.47■■□□□ 1.19
HDAC4-211ENST00000494800 CWF19L2Q2TBE0 894 aaKnown RBP22.47■■□□□ 1.19
HDAC4-211ENST00000494800 DPP8Q6V1X1 898 aaPredicted RBP22.47■■□□□ 1.19
HDAC4-211ENST00000494800 LINS1Q8NG48 757 aa22.47■■□□□ 1.19
HDAC4-211ENST00000494800 VPS33BQ9H267 617 aa22.47■■□□□ 1.19
HDAC4-211ENST00000494800 SNED1Q8TER0 1413 aa22.47■■□□□ 1.19
HDAC4-211ENST00000494800 MIER1Q8N108 512 aa22.46■■□□□ 1.19
HDAC4-211ENST00000494800 MPNDQ8N594 471 aa22.46■■□□□ 1.19
HDAC4-211ENST00000494800 DICER1Q9UPY3 1922 aaKnown RBP22.46■■□□□ 1.19
HDAC4-211ENST00000494800 CACNA1FO60840 1977 aa22.45■■□□□ 1.18
HDAC4-211ENST00000494800 LARGE2Q8N3Y3 721 aa22.45■■□□□ 1.18
HDAC4-211ENST00000494800 GCKRQ14397 625 aa22.44■■□□□ 1.18
HDAC4-211ENST00000494800 JARID2Q92833 1246 aaPredicted RBP22.44■■□□□ 1.18
HDAC4-211ENST00000494800 PPIP5K2O43314 1243 aa22.43■■□□□ 1.18
HDAC4-211ENST00000494800 EIF6P56537 245 aaKnown RBP22.43■■□□□ 1.18
HDAC4-211ENST00000494800 RPS8P62241 208 aaKnown RBP22.43■■□□□ 1.18
HDAC4-211ENST00000494800 UBE3BQ7Z3V4 1068 aa22.43■■□□□ 1.18
HDAC4-211ENST00000494800 RBM46Q8TBY0 533 aaKnown RBP22.43■■□□□ 1.18
HDAC4-211ENST00000494800 CELF1Q92879 486 aaKnown RBP22.43■■□□□ 1.18
HDAC4-211ENST00000494800 DDNO94850 711 aaPredicted RBP22.42■■□□□ 1.18
HDAC4-211ENST00000494800 CTSWP56202 376 aa22.42■■□□□ 1.18
HDAC4-211ENST00000494800 NIM1KQ8IY84 436 aa22.42■■□□□ 1.18
HDAC4-211ENST00000494800 RTFDC1Q9BY42 306 aaPredicted RBP22.42■■□□□ 1.18
HDAC4-211ENST00000494800 IQCA1LA6NCM1 817 aa22.41■■□□□ 1.18
HDAC4-211ENST00000494800 H7C1W4 665 aa22.41■■□□□ 1.18
HDAC4-211ENST00000494800 FZD9O00144 591 aa22.41■■□□□ 1.18
HDAC4-211ENST00000494800 F6X3S4 739 aa22.4■■□□□ 1.18
HDAC4-211ENST00000494800 CDCA7LQ96GN5 454 aa22.4■■□□□ 1.18
HDAC4-211ENST00000494800 CCDC85AQ96PX6 553 aaPredicted RBP22.4■■□□□ 1.18
HDAC4-211ENST00000494800 CDC5LQ99459 802 aaKnown RBP22.4■■□□□ 1.18
HDAC4-211ENST00000494800 NSFL1CQ9UNZ2 370 aaKnown RBP22.4■■□□□ 1.18
HDAC4-211ENST00000494800 CT47B1P0C2W7 299 aaPredicted RBP22.39■■□□□ 1.17
HDAC4-211ENST00000494800 FSTL1Q12841 308 aa22.39■■□□□ 1.17
HDAC4-211ENST00000494800 AOC3Q16853 763 aa22.39■■□□□ 1.17
HDAC4-211ENST00000494800 SLC51AQ86UW1 340 aa22.39■■□□□ 1.17
HDAC4-211ENST00000494800 ANKRD18AQ8IVF6 992 aa22.39■■□□□ 1.17
HDAC4-211ENST00000494800 GPC2Q8N158 579 aa22.39■■□□□ 1.17
HDAC4-211ENST00000494800 WDR90Q96KV7 1748 aa22.39■■□□□ 1.17
HDAC4-211ENST00000494800 ZNF541Q9H0D2 1346 aa22.38■■□□□ 1.17
HDAC4-211ENST00000494800 BEND3Q5T5X7 828 aa22.38■■□□□ 1.17
HDAC4-211ENST00000494800 SLC4A10Q6U841 1118 aa22.38■■□□□ 1.17
HDAC4-211ENST00000494800 SMC1BQ8NDV3 1235 aa22.38■■□□□ 1.17
HDAC4-211ENST00000494800 L3MBTL3Q96JM7 780 aaPredicted RBP22.38■■□□□ 1.17
HDAC4-211ENST00000494800 SEC31BQ9NQW1 1179 aa22.38■■□□□ 1.17
HDAC4-211ENST00000494800 PTPRCP08575 1304 aa22.37■■□□□ 1.17
HDAC4-211ENST00000494800 HSPA6P17066 643 aa22.37■■□□□ 1.17
HDAC4-211ENST00000494800 ALDH1L2Q3SY69 923 aa22.37■■□□□ 1.17
HDAC4-211ENST00000494800 TRMT2AQ8IZ69 625 aaKnown RBP22.37■■□□□ 1.17
HDAC4-211ENST00000494800 MRPL50Q8N5N7 158 aaKnown RBP22.37■■□□□ 1.17
HDAC4-211ENST00000494800 TTLL11Q8NHH1 800 aa22.37■■□□□ 1.17
HDAC4-211ENST00000494800 EYA3Q99504 573 aa22.37■■□□□ 1.17
HDAC4-211ENST00000494800 PLA2G12BQ9BX93 195 aa22.37■■□□□ 1.17
HDAC4-211ENST00000494800 C6orf229H3BNL8 230 aa22.36■■□□□ 1.17
HDAC4-211ENST00000494800 KIAA2012Q0VF49 1180 aa22.36■■□□□ 1.17
HDAC4-211ENST00000494800 SRCIN1Q9C0H9 1055 aa22.36■■□□□ 1.17
HDAC4-211ENST00000494800 ANKIB1Q9P2G1 1089 aa22.36■■□□□ 1.17
HDAC4-211ENST00000494800 RTL9Q8NET4 1388 aa22.36■■□□□ 1.17
HDAC4-211ENST00000494800 LRRC37AA6NMS7 1700 aa22.35■■□□□ 1.17
HDAC4-211ENST00000494800 ALDH1L1O75891 902 aa22.35■■□□□ 1.17
HDAC4-211ENST00000494800 WASHC4Q2M389 1173 aa22.35■■□□□ 1.17
HDAC4-211ENST00000494800 SSH1Q8WYL5 1049 aa22.35■■□□□ 1.17
HDAC4-211ENST00000494800 C9orf78Q9NZ63 289 aaPredicted RBP22.35■■□□□ 1.17
HDAC4-211ENST00000494800 ZNRF3Q9ULT6 936 aa22.35■■□□□ 1.17
HDAC4-211ENST00000494800 GJA3Q9Y6H8 435 aa22.35■■□□□ 1.17
HDAC4-211ENST00000494800 POTECB2RU33 542 aa22.34■■□□□ 1.17
HDAC4-211ENST00000494800 GPSM2P81274 684 aa22.34■■□□□ 1.17
HDAC4-211ENST00000494800 GREM2Q9H772 168 aa22.34■■□□□ 1.17
HDAC4-211ENST00000494800 SMC4Q9NTJ3 1288 aa22.34■■□□□ 1.17
HDAC4-211ENST00000494800 HACL1Q9UJ83 578 aa22.34■■□□□ 1.17
HDAC4-211ENST00000494800 GRM8O00222 908 aa22.33■■□□□ 1.17
HDAC4-211ENST00000494800 LMOD1P29536 600 aaPredicted RBP22.33■■□□□ 1.17
HDAC4-211ENST00000494800 IGHMBP2P38935 993 aaKnown RBP22.33■■□□□ 1.17
HDAC4-211ENST00000494800 CASP7P55210 303 aa22.33■■□□□ 1.17
HDAC4-211ENST00000494800 PODXL2Q9NZ53 605 aa22.33■■□□□ 1.17
HDAC4-211ENST00000494800 TAF1P21675 1872 aa22.32■■□□□ 1.16
HDAC4-211ENST00000494800 HNRNPUQ00839 825 aaKnown RBP eCLIP22.32■■□□□ 1.16
HDAC4-211ENST00000494800 BCL2L13Q9BXK5 485 aa22.32■■□□□ 1.16
HDAC4-211ENST00000494800 GGA1Q9UJY5 639 aa22.32■■□□□ 1.16
HDAC4-211ENST00000494800 COL4A5P29400 1685 aa22.31■■□□□ 1.16
HDAC4-211ENST00000494800 APLP1P51693 650 aa22.31■■□□□ 1.16
HDAC4-211ENST00000494800 TBC1D16Q8TBP0 767 aa22.31■■□□□ 1.16
HDAC4-211ENST00000494800 ZC3H12CQ9C0D7 883 aaKnown RBP22.31■■□□□ 1.16
HDAC4-211ENST00000494800 BSDC1Q9NW68 430 aaPredicted RBP22.31■■□□□ 1.16
HDAC4-211ENST00000494800 XDHP47989 1333 aa22.31■■□□□ 1.16
HDAC4-211ENST00000494800 G3V3G9 751 aa22.3■■□□□ 1.16
HDAC4-211ENST00000494800 UFL1O94874 794 aa22.3■■□□□ 1.16
HDAC4-211ENST00000494800 CSF1RP07333 972 aa22.3■■□□□ 1.16
HDAC4-211ENST00000494800 ITGA6P23229 1130 aa22.3■■□□□ 1.16
HDAC4-211ENST00000494800 TNIP1Q15025 636 aa22.3■■□□□ 1.16
HDAC4-211ENST00000494800 DCAF8Q5TAQ9 597 aa22.3■■□□□ 1.16
HDAC4-211ENST00000494800 PNMA8AQ86V59 439 aaPredicted RBP22.3■■□□□ 1.16
HDAC4-211ENST00000494800 MPHOSPH8Q99549 860 aa22.3■■□□□ 1.16
HDAC4-211ENST00000494800 TAF1DQ9H5J8 278 aaPredicted RBP22.3■■□□□ 1.16
HDAC4-211ENST00000494800 POLLQ9UGP5 575 aa22.3■■□□□ 1.16
Retrieved 100 of 20,778 RNA–protein pairs in 13 ms