RNA–Protein interactions for RNA: ENST00000494047.5

RFC4-214, Transcript of replication factor C subunit 4, humanhuman

TSL 2

Gene RFC4, Length 1,393 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RFC4-214ENST00000494047 F13A1P00488 732 aa13.71□□□□□ -0.22
RFC4-214ENST00000494047 EIF2S2P20042 333 aaKnown RBP13.71□□□□□ -0.22
RFC4-214ENST00000494047 RBSNQ9H1K0 784 aa13.71□□□□□ -0.22
RFC4-214ENST00000494047 ZBTB4Q9P1Z0 1013 aaPredicted RBP13.71□□□□□ -0.22
RFC4-214ENST00000494047 GOLGA6L6A8MZA4 724 aa13.7□□□□□ -0.22
RFC4-214ENST00000494047 NBPF7P0C2Y1 421 aaPredicted RBP13.7□□□□□ -0.22
RFC4-214ENST00000494047 KIAA2012Q0VF49 1180 aa13.7□□□□□ -0.22
RFC4-214ENST00000494047 TSGA10IPQ3SY00 556 aa13.7□□□□□ -0.22
RFC4-214ENST00000494047 RUFY3Q7L099 469 aa13.7□□□□□ -0.22
RFC4-214ENST00000494047 NUTM1Q86Y26 1132 aa13.7□□□□□ -0.22
RFC4-214ENST00000494047 DDX54Q8TDD1 881 aaKnown RBP13.7□□□□□ -0.22
RFC4-214ENST00000494047 PDRG1Q9NUG6 133 aa13.7□□□□□ -0.22
RFC4-214ENST00000494047 MAP3K2Q9Y2U5 619 aa13.7□□□□□ -0.22
RFC4-214ENST00000494047 SPEF2Q9C093 1822 aa13.69□□□□□ -0.22
RFC4-214ENST00000494047 NHSQ6T4R5 1651 aa13.69□□□□□ -0.22
RFC4-214ENST00000494047 RREB1Q92766 1687 aa13.69□□□□□ -0.22
RFC4-214ENST00000494047 PTMAP06454 111 aaKnown RBP13.69□□□□□ -0.22
RFC4-214ENST00000494047 AK2P54819 239 aa13.69□□□□□ -0.22
RFC4-214ENST00000494047 HMGN5P82970 282 aaKnown RBP13.69□□□□□ -0.22
RFC4-214ENST00000494047 HSP90AA2PQ14568 343 aaPredicted RBP13.69□□□□□ -0.22
RFC4-214ENST00000494047 UPF3BQ9BZI7 483 aaKnown RBP13.69□□□□□ -0.22
RFC4-214ENST00000494047 USP25Q9UHP3 1055 aa13.69□□□□□ -0.22
RFC4-214ENST00000494047 SPG7Q9UQ90 795 aa13.69□□□□□ -0.22
RFC4-214ENST00000494047 MEGF6O75095 1541 aa13.68□□□□□ -0.22
RFC4-214ENST00000494047 PKD1L3Q7Z443 1732 aa13.68□□□□□ -0.22
RFC4-214ENST00000494047 PCDH11XQ9BZA7 1347 aa13.68□□□□□ -0.22
RFC4-214ENST00000494047 PCDH11YQ9BZA8 1340 aa13.68□□□□□ -0.22
RFC4-214ENST00000494047 CASTP20810 708 aaKnown RBP13.68□□□□□ -0.22
RFC4-214ENST00000494047 HMGB2P26583 209 aaKnown RBP13.68□□□□□ -0.22
RFC4-214ENST00000494047 KCNJ4P48050 445 aa13.68□□□□□ -0.22
RFC4-214ENST00000494047 KRT85P78386 507 aa13.68□□□□□ -0.22
RFC4-214ENST00000494047 NECTIN2Q92692 538 aa13.68□□□□□ -0.22
RFC4-214ENST00000494047 SCAND2PQ9GZW5 306 aaPredicted RBP13.68□□□□□ -0.22
RFC4-214ENST00000494047 HMGB1P09429 215 aaKnown RBP13.67□□□□□ -0.22
RFC4-214ENST00000494047 SYT1P21579 422 aa13.67□□□□□ -0.22
RFC4-214ENST00000494047 LRRFIP1Q32MZ4 808 aaKnown RBP13.67□□□□□ -0.22
RFC4-214ENST00000494047 TSHZ3Q63HK5 1081 aa13.67□□□□□ -0.22
RFC4-214ENST00000494047 CWC27Q6UX04 472 aaKnown RBP13.67□□□□□ -0.22
RFC4-214ENST00000494047 USP48Q86UV5 1035 aa13.67□□□□□ -0.22
RFC4-214ENST00000494047 USHBP1Q8N6Y0 703 aa13.67□□□□□ -0.22
RFC4-214ENST00000494047 UBE2Q2Q8WVN8 375 aa13.67□□□□□ -0.22
RFC4-214ENST00000494047 MAP4K1Q92918 833 aa13.67□□□□□ -0.22
RFC4-214ENST00000494047 MED23Q9ULK4 1368 aa13.66□□□□□ -0.22
RFC4-214ENST00000494047 NECTIN1Q15223 517 aa13.66□□□□□ -0.22
RFC4-214ENST00000494047 BLOC1S2Q6QNY1 142 aa13.66□□□□□ -0.22
RFC4-214ENST00000494047 AACSQ86V21 672 aa13.66□□□□□ -0.22
RFC4-214ENST00000494047 NUP188Q5SRE5 1749 aa13.65□□□□□ -0.22
RFC4-214ENST00000494047 SHANK3Q9BYB0 1731 aa13.65□□□□□ -0.22
RFC4-214ENST00000494047 DYNC1I1O14576 645 aa13.65□□□□□ -0.22
RFC4-214ENST00000494047 KCNQ2O43526 872 aa13.65□□□□□ -0.22
RFC4-214ENST00000494047 CCDC192P0DO97 292 aa13.65□□□□□ -0.22
RFC4-214ENST00000494047 ATL3Q6DD88 541 aa13.65□□□□□ -0.22
RFC4-214ENST00000494047 RGS22Q8NE09 1264 aa13.65□□□□□ -0.22
RFC4-214ENST00000494047 ACSBG1Q96GR2 724 aa13.65□□□□□ -0.22
RFC4-214ENST00000494047 PRIMPOLQ96LW4 560 aa13.65□□□□□ -0.22
RFC4-214ENST00000494047 JAKMIP1Q96N16 626 aaKnown RBP13.65□□□□□ -0.22
RFC4-214ENST00000494047 PDCL3Q9H2J4 239 aa13.65□□□□□ -0.22
RFC4-214ENST00000494047 COPRSQ9NQ92 184 aa13.65□□□□□ -0.22
RFC4-214ENST00000494047 SASS6Q6UVJ0 657 aa13.64□□□□□ -0.23
RFC4-214ENST00000494047 RIC3Q7Z5B4 369 aa13.64□□□□□ -0.23
RFC4-214ENST00000494047 LGR6Q9HBX8 967 aa13.64□□□□□ -0.23
RFC4-214ENST00000494047 DDX19AQ9NUU7 478 aaKnown RBP13.64□□□□□ -0.23
RFC4-214ENST00000494047 RBM27Q9P2N5 1060 aaKnown RBP13.64□□□□□ -0.23
RFC4-214ENST00000494047 U3KPZ7 1027 aaPredicted RBP13.64□□□□□ -0.23
RFC4-214ENST00000494047 BTAF1O14981 1849 aa13.64□□□□□ -0.23
RFC4-214ENST00000494047 GJB2P29033 226 aa13.63□□□□□ -0.23
RFC4-214ENST00000494047 TXNRD1Q16881 649 aa13.63□□□□□ -0.23
RFC4-214ENST00000494047 CREB3L3Q68CJ9 461 aa13.63□□□□□ -0.23
RFC4-214ENST00000494047 ZNF790Q6PG37 636 aa13.63□□□□□ -0.23
RFC4-214ENST00000494047 TTC5Q8N0Z6 440 aa13.63□□□□□ -0.23
RFC4-214ENST00000494047 FSD1Q9BTV5 496 aa13.63□□□□□ -0.23
RFC4-214ENST00000494047 METTL22Q9BUU2 404 aaPredicted RBP13.63□□□□□ -0.23
RFC4-214ENST00000494047 ZSCAN16Q9H4T2 348 aaPredicted RBP13.63□□□□□ -0.23
RFC4-214ENST00000494047 SLC52A2Q9HAB3 445 aa13.63□□□□□ -0.23
RFC4-214ENST00000494047 GPR108Q9NPR9 543 aa13.63□□□□□ -0.23
RFC4-214ENST00000494047 RBM8AQ9Y5S9 174 aaKnown RBP13.63□□□□□ -0.23
RFC4-214ENST00000494047 AFDNP55196 1824 aaKnown RBP13.63□□□□□ -0.23
RFC4-214ENST00000494047 TCHHQ07283 1943 aa13.63□□□□□ -0.23
RFC4-214ENST00000494047 C5P01031 1676 aa13.62□□□□□ -0.23
RFC4-214ENST00000494047 ATP5JP18859 108 aa13.62□□□□□ -0.23
RFC4-214ENST00000494047 DHX8Q14562 1220 aaKnown RBP13.62□□□□□ -0.23
RFC4-214ENST00000494047 R3HDM1Q15032 1099 aaKnown RBP13.62□□□□□ -0.23
RFC4-214ENST00000494047 SLC27A3Q5K4L6 730 aa13.62□□□□□ -0.23
RFC4-214ENST00000494047 PRPF40BQ6NWY9 871 aaKnown RBP13.62□□□□□ -0.23
RFC4-214ENST00000494047 MPRIPQ6WCQ1 1025 aa13.62□□□□□ -0.23
RFC4-214ENST00000494047 PTF1AQ7RTS3 328 aa13.62□□□□□ -0.23
RFC4-214ENST00000494047 IFNL2Q8IZJ0 200 aa13.62□□□□□ -0.23
RFC4-214ENST00000494047 DCAF5Q96JK2 942 aa13.62□□□□□ -0.23
RFC4-214ENST00000494047 LLPHQ9BRT6 129 aaKnown RBP13.62□□□□□ -0.23
RFC4-214ENST00000494047 ARFGEF2Q9Y6D5 1785 aa13.61□□□□□ -0.23
RFC4-214ENST00000494047 PSDA5PKW4 1024 aaPredicted RBP13.61□□□□□ -0.23
RFC4-214ENST00000494047 GOLGA6L4A6NEF3 574 aa13.61□□□□□ -0.23
RFC4-214ENST00000494047 SNRPA1P09661 255 aaKnown RBP13.61□□□□□ -0.23
RFC4-214ENST00000494047 NKX1-1Q15270 411 aaPredicted RBP13.61□□□□□ -0.23
RFC4-214ENST00000494047 USPL1Q5W0Q7 1092 aa13.61□□□□□ -0.23
RFC4-214ENST00000494047 PROM2Q8N271 834 aa13.61□□□□□ -0.23
RFC4-214ENST00000494047 SYTL4Q96C24 671 aaPredicted RBP13.61□□□□□ -0.23
RFC4-214ENST00000494047 FBXO3Q9UK99 471 aa13.61□□□□□ -0.23
RFC4-214ENST00000494047 MTMR6Q9Y217 621 aa13.61□□□□□ -0.23
RFC4-214ENST00000494047 DOT1LQ8TEK3 1739 aa13.6□□□□□ -0.23
Retrieved 100 of 20,778 RNA–protein pairs in 73.1 ms