RNA–Protein interactions for RNA: ENST00000493945.5

ACTB-213, Transcript of actin beta, humanhuman

TSL 5

Gene ACTB, Length 1,236 nt, Biotype retained intron, Subcellular localisation Cell leading edge, Cytoplasm, Cytosol, Exosome, Lamellipodium, Mitochondria, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
ACTB-213ENST00000493945 SGIP1Q9BQI5 828 aa18.59■□□□□ 0.57
ACTB-213ENST00000493945 BICC1Q9H694 974 aaKnown RBP18.59■□□□□ 0.57
ACTB-213ENST00000493945 TNRC6CQ9HCJ0 1690 aaKnown RBP18.59■□□□□ 0.57
ACTB-213ENST00000493945 ANKRD18BA2A2Z9 1011 aa18.58■□□□□ 0.56
ACTB-213ENST00000493945 NPR1P16066 1061 aa18.58■□□□□ 0.56
ACTB-213ENST00000493945 ALDH1B1P30837 517 aa18.58■□□□□ 0.56
ACTB-213ENST00000493945 PTGER2P43116 358 aa18.58■□□□□ 0.56
ACTB-213ENST00000493945 RABL6Q3YEC7 729 aaPredicted RBP18.58■□□□□ 0.56
ACTB-213ENST00000493945 DLEC1Q9Y238 1755 aa18.58■□□□□ 0.56
ACTB-213ENST00000493945 IGHMBP2P38935 993 aaKnown RBP18.57■□□□□ 0.56
ACTB-213ENST00000493945 MTX1Q13505 466 aa18.57■□□□□ 0.56
ACTB-213ENST00000493945 LMBR1LQ6UX01 489 aa18.57■□□□□ 0.56
ACTB-213ENST00000493945 TMC4Q7Z404 712 aa18.57■□□□□ 0.56
ACTB-213ENST00000493945 EXOC6Q8TAG9 804 aa18.57■□□□□ 0.56
ACTB-213ENST00000493945 JARID2Q92833 1246 aaPredicted RBP18.57■□□□□ 0.56
ACTB-213ENST00000493945 MASTLQ96GX5 879 aa18.57■□□□□ 0.56
ACTB-213ENST00000493945 SRGAP3O43295 1099 aa18.56■□□□□ 0.56
ACTB-213ENST00000493945 CRY2Q49AN0 593 aa18.56■□□□□ 0.56
ACTB-213ENST00000493945 C2CD5Q86YS7 1000 aa18.56■□□□□ 0.56
ACTB-213ENST00000493945 TTLL11Q8NHH1 800 aa18.56■□□□□ 0.56
ACTB-213ENST00000493945 CNKSR1Q969H4 720 aa18.56■□□□□ 0.56
ACTB-213ENST00000493945 KLRG2A4D1S0 409 aaPredicted RBP18.55■□□□□ 0.56
ACTB-213ENST00000493945 CSF1RP07333 972 aa18.55■□□□□ 0.56
ACTB-213ENST00000493945 FOXO4P98177 505 aa18.55■□□□□ 0.56
ACTB-213ENST00000493945 HSP90AB4PQ58FF6 505 aa18.55■□□□□ 0.56
ACTB-213ENST00000493945 STYK1Q6J9G0 422 aa18.55■□□□□ 0.56
ACTB-213ENST00000493945 CCDC24Q8N4L8 307 aa18.55■□□□□ 0.56
ACTB-213ENST00000493945 C1orf115Q9H7X2 142 aa18.55■□□□□ 0.56
ACTB-213ENST00000493945 ITGA6P23229 1130 aa18.54■□□□□ 0.56
ACTB-213ENST00000493945 FAM161AQ3B820 660 aa18.54■□□□□ 0.56
ACTB-213ENST00000493945 CEP85Q6P2H3 762 aa18.54■□□□□ 0.56
ACTB-213ENST00000493945 ANKRD18AQ8IVF6 992 aa18.54■□□□□ 0.56
ACTB-213ENST00000493945 SYNE4Q8N205 404 aa18.54■□□□□ 0.56
ACTB-213ENST00000493945 ANKRD44Q8N8A2 993 aa18.54■□□□□ 0.56
ACTB-213ENST00000493945 CRAMP1Q96RY5 1269 aa18.54■□□□□ 0.56
ACTB-213ENST00000493945 MPHOSPH8Q99549 860 aa18.54■□□□□ 0.56
ACTB-213ENST00000493945 FBXO3Q9UK99 471 aa18.54■□□□□ 0.56
ACTB-213ENST00000493945 COL11A2P13942 1736 aaPredicted RBP18.54■□□□□ 0.56
ACTB-213ENST00000493945 SRGNP10124 158 aa18.53■□□□□ 0.56
ACTB-213ENST00000493945 ATP8B2P98198 1209 aa18.53■□□□□ 0.56
ACTB-213ENST00000493945 ZNF622Q969S3 477 aaKnown RBP eCLIP18.53■□□□□ 0.56
ACTB-213ENST00000493945 RWDD1Q9H446 243 aaPredicted RBP18.53■□□□□ 0.56
ACTB-213ENST00000493945 ZBTB47Q9UFB7 747 aaPredicted RBP18.53■□□□□ 0.56
ACTB-213ENST00000493945 HOXA10P31260 410 aaPredicted RBP18.52■□□□□ 0.56
ACTB-213ENST00000493945 GRAPQ13588 217 aa18.52■□□□□ 0.56
ACTB-213ENST00000493945 GRAPLQ8TC17 118 aaPredicted RBP18.52■□□□□ 0.56
ACTB-213ENST00000493945 GREM2Q9H772 168 aa18.52■□□□□ 0.56
ACTB-213ENST00000493945 BBOX1O75936 387 aa18.51■□□□□ 0.55
ACTB-213ENST00000493945 OS9Q13438 667 aaPredicted RBP18.51■□□□□ 0.55
ACTB-213ENST00000493945 EPHA10Q5JZY3 1008 aa18.51■□□□□ 0.55
ACTB-213ENST00000493945 SOGA3Q5TF21 947 aa18.51■□□□□ 0.55
ACTB-213ENST00000493945 KAZALD1Q96I82 304 aa18.51■□□□□ 0.55
ACTB-213ENST00000493945 CCDC85AQ96PX6 553 aaPredicted RBP18.51■□□□□ 0.55
ACTB-213ENST00000493945 CACNA1SQ13698 1873 aa18.5■□□□□ 0.55
ACTB-213ENST00000493945 GRIPAP1Q4V328 841 aa18.5■□□□□ 0.55
ACTB-213ENST00000493945 ERC1Q8IUD2 1116 aa18.5■□□□□ 0.55
ACTB-213ENST00000493945 SSH3Q8TE77 659 aa18.5■□□□□ 0.55
ACTB-213ENST00000493945 PIM2Q9P1W9 311 aa18.5■□□□□ 0.55
ACTB-213ENST00000493945 SPEF2Q9C093 1822 aa18.5■□□□□ 0.55
ACTB-213ENST00000493945 RPS8P62241 208 aaKnown RBP18.49■□□□□ 0.55
ACTB-213ENST00000493945 G3BP1Q13283 466 aaKnown RBP eCLIP18.49■□□□□ 0.551e-23■□□□□ 10.8
ACTB-213ENST00000493945 TTLL6Q8N841 843 aa18.49■□□□□ 0.55
ACTB-213ENST00000493945 CNNM1Q9NRU3 951 aa18.49■□□□□ 0.55
ACTB-213ENST00000493945 PPEF1O14829 653 aaPredicted RBP18.48■□□□□ 0.55
ACTB-213ENST00000493945 HDAC1Q13547 482 aaPredicted RBP18.48■□□□□ 0.55
ACTB-213ENST00000493945 POLA2Q14181 598 aa18.48■□□□□ 0.55
ACTB-213ENST00000493945 CC2D2BQ6DHV5 1058 aa18.48■□□□□ 0.55
ACTB-213ENST00000493945 LDHAL6AQ6ZMR3 332 aa18.48■□□□□ 0.55
ACTB-213ENST00000493945 FHDC1Q9C0D6 1143 aaPredicted RBP18.48■□□□□ 0.55
ACTB-213ENST00000493945 COPRSQ9NQ92 184 aa18.48■□□□□ 0.55
ACTB-213ENST00000493945 CIAO1O76071 339 aa18.47■□□□□ 0.55
ACTB-213ENST00000493945 DPEP1P16444 411 aa18.47■□□□□ 0.55
ACTB-213ENST00000493945 CHRNA5P30532 468 aa18.47■□□□□ 0.55
ACTB-213ENST00000493945 DALRD3Q5D0E6 543 aaKnown RBP18.47■□□□□ 0.55
ACTB-213ENST00000493945 C3orf67Q6ZVT6 689 aa18.47■□□□□ 0.55
ACTB-213ENST00000493945 GCC1Q96CN9 775 aa18.47■□□□□ 0.55
ACTB-213ENST00000493945 CCDC136Q96JN2 1154 aa18.47■□□□□ 0.55
ACTB-213ENST00000493945 BSDC1Q9NW68 430 aaPredicted RBP18.47■□□□□ 0.55
ACTB-213ENST00000493945 BRCA1P38398 1863 aaKnown RBP18.47■□□□□ 0.55
ACTB-213ENST00000493945 MROH5Q6ZUA9 1318 aa18.47■□□□□ 0.55
ACTB-213ENST00000493945 KIAA1551Q9HCM1 1747 aa18.46■□□□□ 0.55
ACTB-213ENST00000493945 PNMA6EA0A0J9YXQ4 647 aa18.46■□□□□ 0.55
ACTB-213ENST00000493945 RAB11FIP3O75154 756 aa18.46■□□□□ 0.55
ACTB-213ENST00000493945 SURF6O75683 361 aaKnown RBP18.46■□□□□ 0.55
ACTB-213ENST00000493945 IL15P40933 162 aaPredicted RBP18.46■□□□□ 0.55
ACTB-213ENST00000493945 ANKRD2Q9GZV1 360 aa18.46■□□□□ 0.55
ACTB-213ENST00000493945 PPP4R2Q9NY27 417 aa18.46■□□□□ 0.55
ACTB-213ENST00000493945 A0A0G2JLW4 131 aa18.45■□□□□ 0.54
ACTB-213ENST00000493945 EYA2O00167 538 aa18.45■□□□□ 0.54
ACTB-213ENST00000493945 PRPF40BQ6NWY9 871 aaKnown RBP18.45■□□□□ 0.54
ACTB-213ENST00000493945 SEC31BQ9NQW1 1179 aa18.45■□□□□ 0.54
ACTB-213ENST00000493945 PCDHB15Q9Y5E8 787 aa18.45■□□□□ 0.54
ACTB-213ENST00000493945 PTPN12Q05209 780 aaKnown RBP18.44■□□□□ 0.54
ACTB-213ENST00000493945 CELF1Q92879 486 aaKnown RBP18.44■□□□□ 0.54
ACTB-213ENST00000493945 ARFGEF1Q9Y6D6 1849 aa18.44■□□□□ 0.54
ACTB-213ENST00000493945 LRRC37AA6NMS7 1700 aa18.43■□□□□ 0.54
ACTB-213ENST00000493945 RFX5P48382 616 aaPredicted RBP18.43■□□□□ 0.54
ACTB-213ENST00000493945 METTL24Q5JXM2 366 aa18.43■□□□□ 0.54
ACTB-213ENST00000493945 SYT17Q9BSW7 474 aa18.43■□□□□ 0.54
ACTB-213ENST00000493945 SIL1Q9H173 461 aa18.43■□□□□ 0.54
Retrieved 100 of 20,778 RNA–protein pairs in 31.3 ms