RNA–Protein interactions for RNA: ENST00000493265.2

LIME1-208, Transcript of Lck interacting transmembrane adaptor 1, humanhuman

APPRIS ALT2 TSL 2

Gene LIME1, Length 661 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIME1-208ENST00000493265 UTYO14607 1347 aa21.56■■□□□ 1.04
LIME1-208ENST00000493265 CCDC85AQ96PX6 553 aaPredicted RBP21.56■■□□□ 1.04
LIME1-208ENST00000493265 CDHR2Q9BYE9 1310 aa21.55■■□□□ 1.04
LIME1-208ENST00000493265 NRXN2Q9P2S2 1712 aa21.55■■□□□ 1.04
LIME1-208ENST00000493265 TOMM70O94826 608 aa21.55■■□□□ 1.04
LIME1-208ENST00000493265 GNAI2P04899 355 aa21.55■■□□□ 1.04
LIME1-208ENST00000493265 C9orf131Q5VYM1 1079 aa21.55■■□□□ 1.04
LIME1-208ENST00000493265 CHMP4BQ9H444 224 aaKnown RBP21.55■■□□□ 1.04
LIME1-208ENST00000493265 PIM2Q9P1W9 311 aa21.55■■□□□ 1.04
LIME1-208ENST00000493265 EPHA10Q5JZY3 1008 aa21.54■■□□□ 1.04
LIME1-208ENST00000493265 C3orf67Q6ZVT6 689 aa21.54■■□□□ 1.04
LIME1-208ENST00000493265 BICC1Q9H694 974 aaKnown RBP21.54■■□□□ 1.04
LIME1-208ENST00000493265 CHMP3Q9Y3E7 222 aa21.54■■□□□ 1.04
LIME1-208ENST00000493265 DDX60Q8IY21 1712 aaKnown RBP21.54■■□□□ 1.04
LIME1-208ENST00000493265 PDE8AO60658 829 aa21.53■■□□□ 1.04
LIME1-208ENST00000493265 HSP90B1P14625 803 aaKnown RBP21.53■■□□□ 1.04
LIME1-208ENST00000493265 CHRNA5P30532 468 aa21.53■■□□□ 1.04
LIME1-208ENST00000493265 APLP1P51693 650 aa21.53■■□□□ 1.04
LIME1-208ENST00000493265 DALRD3Q5D0E6 543 aaKnown RBP21.53■■□□□ 1.04
LIME1-208ENST00000493265 SLC10A5Q5PT55 438 aa21.53■■□□□ 1.04
LIME1-208ENST00000493265 KAZALD1Q96I82 304 aa21.53■■□□□ 1.04
LIME1-208ENST00000493265 NLRP3Q96P20 1036 aa21.53■■□□□ 1.04
LIME1-208ENST00000493265 ZBTB40Q9NUA8 1239 aa21.53■■□□□ 1.04
LIME1-208ENST00000493265 TNRC6CQ9HCJ0 1690 aaKnown RBP21.53■■□□□ 1.04
LIME1-208ENST00000493265 FOXO4P98177 505 aa21.52■■□□□ 1.04
LIME1-208ENST00000493265 BRIP1Q9BX63 1249 aa21.52■■□□□ 1.04
LIME1-208ENST00000493265 HDAC5Q9UQL6 1122 aa21.52■■□□□ 1.04
LIME1-208ENST00000493265 SBF1O95248 1867 aa21.52■■□□□ 1.03
LIME1-208ENST00000493265 CTSWP56202 376 aa21.51■■□□□ 1.03
LIME1-208ENST00000493265 LMBR1LQ6UX01 489 aa21.51■■□□□ 1.03
LIME1-208ENST00000493265 WDR90Q96KV7 1748 aa21.51■■□□□ 1.03
LIME1-208ENST00000493265 LAMB2P55268 1798 aa21.51■■□□□ 1.03
LIME1-208ENST00000493265 ANKRD31Q8N7Z5 1873 aa21.5■■□□□ 1.03
LIME1-208ENST00000493265 RNF181Q9P0P0 153 aa21.5■■□□□ 1.03
LIME1-208ENST00000493265 PDE6BP35913 854 aa21.49■■□□□ 1.03
LIME1-208ENST00000493265 C2CD5Q86YS7 1000 aa21.49■■□□□ 1.03
LIME1-208ENST00000493265 ANKRD44Q8N8A2 993 aa21.49■■□□□ 1.03
LIME1-208ENST00000493265 PLA2G12BQ9BX93 195 aa21.49■■□□□ 1.03
LIME1-208ENST00000493265 C16orf71Q8IYS4 520 aaPredicted RBP21.48■■□□□ 1.03
LIME1-208ENST00000493265 TTLL11Q8NHH1 800 aa21.48■■□□□ 1.03
LIME1-208ENST00000493265 RPGRQ92834 1020 aaKnown RBP21.48■■□□□ 1.03
LIME1-208ENST00000493265 FAM161AQ3B820 660 aa21.47■■□□□ 1.03
LIME1-208ENST00000493265 CCDC152Q4G0S7 254 aa21.47■■□□□ 1.03
LIME1-208ENST00000493265 GREM2Q9H772 168 aa21.47■■□□□ 1.03
LIME1-208ENST00000493265 RIC1Q4ADV7 1423 aa21.46■■□□□ 1.03
LIME1-208ENST00000493265 DLEC1Q9Y238 1755 aa21.46■■□□□ 1.03
LIME1-208ENST00000493265 H0YIN7 160 aa21.46■■□□□ 1.03
LIME1-208ENST00000493265 MYH3P11055 1940 aa21.46■■□□□ 1.03
LIME1-208ENST00000493265 CSF1RP07333 972 aa21.45■■□□□ 1.02
LIME1-208ENST00000493265 SF3B3Q15393 1217 aaKnown RBP21.45■■□□□ 1.02
LIME1-208ENST00000493265 RBM46Q8TBY0 533 aaKnown RBP21.45■■□□□ 1.02
LIME1-208ENST00000493265 ZNF622Q969S3 477 aaKnown RBP eCLIP21.45■■□□□ 1.02
LIME1-208ENST00000493265 SEC31BQ9NQW1 1179 aa21.45■■□□□ 1.02
LIME1-208ENST00000493265 KDM2BQ8NHM5 1336 aa21.45■■□□□ 1.02
LIME1-208ENST00000493265 SRGAP3O43295 1099 aa21.44■■□□□ 1.02
LIME1-208ENST00000493265 RABL6Q3YEC7 729 aaPredicted RBP21.44■■□□□ 1.02
LIME1-208ENST00000493265 CEP85Q6P2H3 762 aa21.44■■□□□ 1.02
LIME1-208ENST00000493265 DDX46Q7L014 1031 aaKnown RBP21.44■■□□□ 1.02
LIME1-208ENST00000493265 DNAJC5GQ8N7S2 189 aa21.44■■□□□ 1.02
LIME1-208ENST00000493265 PCDHB15Q9Y5E8 787 aa21.44■■□□□ 1.02
LIME1-208ENST00000493265 COL11A2P13942 1736 aaPredicted RBP21.43■■□□□ 1.02
LIME1-208ENST00000493265 PNMA6EA0A0J9YXQ4 647 aa21.43■■□□□ 1.02
LIME1-208ENST00000493265 ITGA6P23229 1130 aa21.43■■□□□ 1.02
LIME1-208ENST00000493265 HTRA3P83110 453 aa21.43■■□□□ 1.02
LIME1-208ENST00000493265 ATP8B2P98198 1209 aa21.43■■□□□ 1.02
LIME1-208ENST00000493265 RASSF7Q02833 373 aa21.43■■□□□ 1.02
LIME1-208ENST00000493265 IFIT5Q13325 482 aaKnown RBP21.43■■□□□ 1.02
LIME1-208ENST00000493265 CCDC57Q2TAC2 916 aa21.43■■□□□ 1.02
LIME1-208ENST00000493265 TAF7LQ5H9L4 462 aa21.43■■□□□ 1.02
LIME1-208ENST00000493265 RBM17Q96I25 401 aaKnown RBP21.43■■□□□ 1.02
LIME1-208ENST00000493265 ANKRD18BA2A2Z9 1011 aa21.42■■□□□ 1.02
LIME1-208ENST00000493265 KLRG2A4D1S0 409 aaPredicted RBP21.42■■□□□ 1.02
LIME1-208ENST00000493265 SRGNP10124 158 aa21.42■■□□□ 1.02
LIME1-208ENST00000493265 NPR1P16066 1061 aa21.42■■□□□ 1.02
LIME1-208ENST00000493265 CCDC88AQ3V6T2 1871 aa21.42■■□□□ 1.02
LIME1-208ENST00000493265 CRY2Q49AN0 593 aa21.42■■□□□ 1.02
LIME1-208ENST00000493265 ZNF594Q96JF6 807 aaPredicted RBP21.42■■□□□ 1.02
LIME1-208ENST00000493265 RRAGCQ9HB90 399 aa21.42■■□□□ 1.02
LIME1-208ENST00000493265 TIAM2Q8IVF5 1701 aa21.41■■□□□ 1.02
LIME1-208ENST00000493265 AAMPQ13685 434 aa21.41■■□□□ 1.02
LIME1-208ENST00000493265 RPAP2Q8IXW5 612 aaPredicted RBP21.41■■□□□ 1.02
LIME1-208ENST00000493265 KLHDC4Q8TBB5 520 aa21.41■■□□□ 1.02
LIME1-208ENST00000493265 MASTLQ96GX5 879 aa21.41■■□□□ 1.02
LIME1-208ENST00000493265 SIRT2Q8IXJ6 389 aa21.4■■□□□ 1.02
LIME1-208ENST00000493265 TAF1P21675 1872 aa21.4■■□□□ 1.02
LIME1-208ENST00000493265 MTX1Q13505 466 aa21.39■■□□□ 1.01
LIME1-208ENST00000493265 CELF1Q92879 486 aaKnown RBP21.39■■□□□ 1.01
LIME1-208ENST00000493265 SIL1Q9H173 461 aa21.39■■□□□ 1.01
LIME1-208ENST00000493265 PDZRN3Q9UPQ7 1066 aa21.39■■□□□ 1.01
LIME1-208ENST00000493265 PA2G4Q9UQ80 394 aaKnown RBP21.39■■□□□ 1.01
LIME1-208ENST00000493265 RTL9Q8NET4 1388 aa21.38■■□□□ 1.01
LIME1-208ENST00000493265 COL4A1P02462 1669 aa21.38■■□□□ 1.01
LIME1-208ENST00000493265 HOXA10P31260 410 aaPredicted RBP21.38■■□□□ 1.01
LIME1-208ENST00000493265 FSTL1Q12841 308 aa21.38■■□□□ 1.01
LIME1-208ENST00000493265 STYK1Q6J9G0 422 aa21.38■■□□□ 1.01
LIME1-208ENST00000493265 ANKRD18AQ8IVF6 992 aa21.38■■□□□ 1.01
LIME1-208ENST00000493265 CDC5LQ99459 802 aaKnown RBP21.38■■□□□ 1.01
LIME1-208ENST00000493265 ZNF219Q9P2Y4 722 aaPredicted RBP21.38■■□□□ 1.01
LIME1-208ENST00000493265 SPEF2Q9C093 1822 aa21.37■■□□□ 1.01
LIME1-208ENST00000493265 HMMRO75330 724 aa21.37■■□□□ 1.01
Retrieved 100 of 20,778 RNA–protein pairs in 12.8 ms