RNA–Protein interactions for RNA: ENST00000492357.1

USP54-214, Transcript of ubiquitin specific peptidase 54, humanhuman

TSL 3

Gene USP54, Length 353 nt, Biotype processed transcript, Subcellular localisation Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP54-214ENST00000492357 CCDC152Q4G0S7 254 aa11.94□□□□□ -0.5
USP54-214ENST00000492357 TBC1D9BQ66K14 1250 aa11.94□□□□□ -0.5
USP54-214ENST00000492357 LMBR1LQ6UX01 489 aa11.94□□□□□ -0.5
USP54-214ENST00000492357 NBPF5PQ86XG9 351 aaPredicted RBP11.94□□□□□ -0.5
USP54-214ENST00000492357 TTLL11Q8NHH1 800 aa11.94□□□□□ -0.5
USP54-214ENST00000492357 GPR108Q9NPR9 543 aa11.94□□□□□ -0.5
USP54-214ENST00000492357 PDZRN3Q9UPQ7 1066 aa11.94□□□□□ -0.5
USP54-214ENST00000492357 EP400Q96L91 3159 aa11.94□□□□□ -0.5
USP54-214ENST00000492357 AOX1Q06278 1338 aa11.93□□□□□ -0.5
USP54-214ENST00000492357 SURF6O75683 361 aaKnown RBP11.93□□□□□ -0.5
USP54-214ENST00000492357 IL15P40933 162 aaPredicted RBP11.93□□□□□ -0.5
USP54-214ENST00000492357 G3BP1Q13283 466 aaKnown RBP eCLIP11.93□□□□□ -0.5
USP54-214ENST00000492357 IFIT5Q13325 482 aaKnown RBP11.93□□□□□ -0.5
USP54-214ENST00000492357 EPHA10Q5JZY3 1008 aa11.93□□□□□ -0.5
USP54-214ENST00000492357 SRP68Q9UHB9 627 aaKnown RBP11.93□□□□□ -0.5
USP54-214ENST00000492357 ANKRD18BA2A2Z9 1011 aa11.92□□□□□ -0.5
USP54-214ENST00000492357 EIF5BO60841 1220 aaKnown RBP11.92□□□□□ -0.5
USP54-214ENST00000492357 PHF14O94880 888 aa11.92□□□□□ -0.5
USP54-214ENST00000492357 GTF2E1P29083 439 aaPredicted RBP11.92□□□□□ -0.5
USP54-214ENST00000492357 PTPN12Q05209 780 aaKnown RBP11.92□□□□□ -0.5
USP54-214ENST00000492357 NFIXQ14938 502 aa11.92□□□□□ -0.5
USP54-214ENST00000492357 ANKRD45Q5TZF3 282 aa11.92□□□□□ -0.5
USP54-214ENST00000492357 AMIGO3Q86WK7 504 aa11.92□□□□□ -0.5
USP54-214ENST00000492357 COL23A1Q86Y22 540 aaPredicted RBP11.92□□□□□ -0.5
USP54-214ENST00000492357 CNBD1Q8NA66 436 aa11.92□□□□□ -0.5
USP54-214ENST00000492357 NLRP3Q96P20 1036 aa11.92□□□□□ -0.5
USP54-214ENST00000492357 OSBPL3Q9H4L5 887 aa11.92□□□□□ -0.5
USP54-214ENST00000492357 EYA2O00167 538 aa11.91□□□□□ -0.5
USP54-214ENST00000492357 ST5P78524 1137 aa11.91□□□□□ -0.5
USP54-214ENST00000492357 TICAM2Q86XR7 235 aa11.91□□□□□ -0.5
USP54-214ENST00000492357 CLASRPQ8N2M8 674 aaKnown RBP11.91□□□□□ -0.5
USP54-214ENST00000492357 RHPN1Q8TCX5 695 aa11.91□□□□□ -0.5
USP54-214ENST00000492357 CDC5LQ99459 802 aaKnown RBP11.91□□□□□ -0.5
USP54-214ENST00000492357 KLRG2A4D1S0 409 aaPredicted RBP11.9□□□□□ -0.5
USP54-214ENST00000492357 TMC4Q7Z404 712 aa11.9□□□□□ -0.5
USP54-214ENST00000492357 EXOC6BQ9Y2D4 811 aa11.9□□□□□ -0.5
USP54-214ENST00000492357 CASZ1Q86V15 1759 aa11.9□□□□□ -0.51
USP54-214ENST00000492357 TTC41PQ6P2S7 1318 aa11.89□□□□□ -0.51
USP54-214ENST00000492357 POLRMTO00411 1230 aaKnown RBP11.89□□□□□ -0.51
USP54-214ENST00000492357 SERPINB2P05120 415 aa11.89□□□□□ -0.51
USP54-214ENST00000492357 ITGA6P23229 1130 aa11.89□□□□□ -0.51
USP54-214ENST00000492357 OS9Q13438 667 aaPredicted RBP11.89□□□□□ -0.51
USP54-214ENST00000492357 CRY2Q49AN0 593 aa11.89□□□□□ -0.51
USP54-214ENST00000492357 UPF1Q92900 1129 aaKnown RBP eCLIP11.89□□□□□ -0.51
USP54-214ENST00000492357 GPATCH3Q96I76 525 aa11.89□□□□□ -0.51
USP54-214ENST00000492357 ANO8Q9HCE9 1232 aaPredicted RBP11.89□□□□□ -0.51
USP54-214ENST00000492357 STAP2Q9UGK3 403 aa11.89□□□□□ -0.51
USP54-214ENST00000492357 AKAP2Q9Y2D5 859 aa11.89□□□□□ -0.51
USP54-214ENST00000492357 ABCC12Q96J65 1359 aa11.89□□□□□ -0.51
USP54-214ENST00000492357 MROH5Q6ZUA9 1318 aa11.88□□□□□ -0.51
USP54-214ENST00000492357 SALL3Q9BXA9 1300 aa11.88□□□□□ -0.51
USP54-214ENST00000492357 FAM161AQ3B820 660 aa11.88□□□□□ -0.51
USP54-214ENST00000492357 ERFEQ4G0M1 354 aa11.88□□□□□ -0.51
USP54-214ENST00000492357 BMP2KLQ5H9B9 411 aa11.88□□□□□ -0.51
USP54-214ENST00000492357 TAF7LQ5H9L4 462 aa11.88□□□□□ -0.51
USP54-214ENST00000492357 PRR5LQ6MZQ0 368 aa11.88□□□□□ -0.51
USP54-214ENST00000492357 BRIP1Q9BX63 1249 aa11.88□□□□□ -0.51
USP54-214ENST00000492357 PARP3Q9Y6F1 533 aa11.88□□□□□ -0.51
USP54-214ENST00000492357 NPHP1O15259 732 aa11.87□□□□□ -0.51
USP54-214ENST00000492357 HOXA10P31260 410 aaPredicted RBP11.87□□□□□ -0.51
USP54-214ENST00000492357 IGHMBP2P38935 993 aaKnown RBP11.87□□□□□ -0.51
USP54-214ENST00000492357 RTL5Q5HYW3 569 aaPredicted RBP11.87□□□□□ -0.51
USP54-214ENST00000492357 BICDL1Q6ZP65 573 aa11.87□□□□□ -0.51
USP54-214ENST00000492357 DEFB132Q7Z7B7 95 aa11.87□□□□□ -0.51
USP54-214ENST00000492357 LNPKQ9C0E8 428 aa11.87□□□□□ -0.51
USP54-214ENST00000492357 GREM2Q9H772 168 aa11.87□□□□□ -0.51
USP54-214ENST00000492357 CHMP3Q9Y3E7 222 aa11.87□□□□□ -0.51
USP54-214ENST00000492357 ERC2O15083 957 aa11.86□□□□□ -0.51
USP54-214ENST00000492357 SASH1O94885 1247 aa11.86□□□□□ -0.51
USP54-214ENST00000492357 HCLS1P14317 486 aaPredicted RBP11.86□□□□□ -0.51
USP54-214ENST00000492357 MX1P20591 662 aa11.86□□□□□ -0.51
USP54-214ENST00000492357 PDE6BP35913 854 aa11.86□□□□□ -0.51
USP54-214ENST00000492357 DDR1Q08345 913 aa11.86□□□□□ -0.51
USP54-214ENST00000492357 LDHAL6AQ6ZMR3 332 aa11.86□□□□□ -0.51
USP54-214ENST00000492357 ATG9AQ7Z3C6 839 aa11.86□□□□□ -0.51
USP54-214ENST00000492357 NUTM1Q86Y26 1132 aa11.86□□□□□ -0.51
USP54-214ENST00000492357 MPHOSPH8Q99549 860 aa11.86□□□□□ -0.51
USP54-214ENST00000492357 BSDC1Q9NW68 430 aaPredicted RBP11.86□□□□□ -0.51
USP54-214ENST00000492357 CEP126Q9P2H0 1117 aa11.86□□□□□ -0.51
USP54-214ENST00000492357 RIPOR2Q9Y4F9 1068 aa11.86□□□□□ -0.51
USP54-214ENST00000492357 PDE4AP27815 886 aa11.85□□□□□ -0.51
USP54-214ENST00000492357 DDX46Q7L014 1031 aaKnown RBP11.85□□□□□ -0.51
USP54-214ENST00000492357 ANKRD18AQ8IVF6 992 aa11.85□□□□□ -0.51
USP54-214ENST00000492357 PLEKHM2Q8IWE5 1019 aa11.85□□□□□ -0.51
USP54-214ENST00000492357 SYNE4Q8N205 404 aa11.85□□□□□ -0.51
USP54-214ENST00000492357 JARID2Q92833 1246 aaPredicted RBP11.85□□□□□ -0.51
USP54-214ENST00000492357 CRAMP1Q96RY5 1269 aa11.85□□□□□ -0.51
USP54-214ENST00000492357 PA2G4Q9UQ80 394 aaKnown RBP11.85□□□□□ -0.51
USP54-214ENST00000492357 ARAP2Q8WZ64 1704 aa11.85□□□□□ -0.51
USP54-214ENST00000492357 ZNF609O15014 1411 aa11.85□□□□□ -0.51
USP54-214ENST00000492357 TNRC6CQ9HCJ0 1690 aaKnown RBP11.84□□□□□ -0.51
USP54-214ENST00000492357 SPEF2Q9C093 1822 aa11.84□□□□□ -0.51
USP54-214ENST00000492357 IGSF3O75054 1194 aa11.84□□□□□ -0.51
USP54-214ENST00000492357 GLRX3O76003 335 aaKnown RBP11.84□□□□□ -0.51
USP54-214ENST00000492357 MMP10P09238 476 aa11.84□□□□□ -0.51
USP54-214ENST00000492357 IFIT2P09913 472 aaKnown RBP11.84□□□□□ -0.51
USP54-214ENST00000492357 PDE1AP54750 535 aa11.84□□□□□ -0.51
USP54-214ENST00000492357 TNNI3KQ59H18 835 aa11.84□□□□□ -0.51
USP54-214ENST00000492357 PPIL4Q8WUA2 492 aaKnown RBP eCLIP11.84□□□□□ -0.51
USP54-214ENST00000492357 ANKRD2Q9GZV1 360 aa11.84□□□□□ -0.51
Retrieved 100 of 20,778 RNA–protein pairs in 60.5 ms