RNA–Protein interactions for RNA: ENST00000489156.1

SYNE1-227, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 1 (best)

Gene SYNE1, Length 1,891 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-227ENST00000489156 MYH3P11055 1940 aa19.7■□□□□ 0.74
SYNE1-227ENST00000489156 PNMA6EA0A0J9YXQ4 647 aa19.7■□□□□ 0.74
SYNE1-227ENST00000489156 SUCLG2Q96I99 432 aa19.7■□□□□ 0.74
SYNE1-227ENST00000489156 SGIP1Q9BQI5 828 aa19.7■□□□□ 0.74
SYNE1-227ENST00000489156 ABCC12Q96J65 1359 aa19.7■□□□□ 0.74
SYNE1-227ENST00000489156 PTGER2P43116 358 aa19.69■□□□□ 0.74
SYNE1-227ENST00000489156 POLA2Q14181 598 aa19.69■□□□□ 0.74
SYNE1-227ENST00000489156 CDHR2Q9BYE9 1310 aa19.69■□□□□ 0.74
SYNE1-227ENST00000489156 ST5P78524 1137 aa19.69■□□□□ 0.74
SYNE1-227ENST00000489156 KAZALD1Q96I82 304 aa19.69■□□□□ 0.74
SYNE1-227ENST00000489156 SPON1Q9HCB6 807 aa19.69■□□□□ 0.74
SYNE1-227ENST00000489156 C8orf34Q49A92 452 aa19.68■□□□□ 0.74
SYNE1-227ENST00000489156 ANKRD31Q8N7Z5 1873 aa19.68■□□□□ 0.74
SYNE1-227ENST00000489156 LAMB2P55268 1798 aa19.67■□□□□ 0.74
SYNE1-227ENST00000489156 EPHA10Q5JZY3 1008 aa19.67■□□□□ 0.74
SYNE1-227ENST00000489156 SLC10A5Q5PT55 438 aa19.67■□□□□ 0.74
SYNE1-227ENST00000489156 SRGAP3O43295 1099 aa19.66■□□□□ 0.74
SYNE1-227ENST00000489156 PDE8AO60658 829 aa19.66■□□□□ 0.74
SYNE1-227ENST00000489156 BICC1Q9H694 974 aaKnown RBP19.66■□□□□ 0.74
SYNE1-227ENST00000489156 TNRC6CQ9HCJ0 1690 aaKnown RBP19.65■□□□□ 0.74
SYNE1-227ENST00000489156 FOXO4P98177 505 aa19.65■□□□□ 0.74
SYNE1-227ENST00000489156 C3orf67Q6ZVT6 689 aa19.65■□□□□ 0.74
SYNE1-227ENST00000489156 PLA2G12BQ9BX93 195 aa19.65■□□□□ 0.74
SYNE1-227ENST00000489156 RAB11FIP3O75154 756 aa19.65■□□□□ 0.74
SYNE1-227ENST00000489156 HSP90AB4PQ58FF6 505 aa19.65■□□□□ 0.74
SYNE1-227ENST00000489156 NLRP3Q96P20 1036 aa19.64■□□□□ 0.73
SYNE1-227ENST00000489156 CCDC85AQ96PX6 553 aaPredicted RBP19.64■□□□□ 0.73
SYNE1-227ENST00000489156 BRIP1Q9BX63 1249 aa19.64■□□□□ 0.73
SYNE1-227ENST00000489156 SRCAPQ6ZRS2 3230 aa19.63■□□□□ 0.73
SYNE1-227ENST00000489156 HSP90B1P14625 803 aaKnown RBP19.63■□□□□ 0.73
SYNE1-227ENST00000489156 LRRCC1Q9C099 1032 aa19.63■□□□□ 0.73
SYNE1-227ENST00000489156 CTSWP56202 376 aa19.62■□□□□ 0.73
SYNE1-227ENST00000489156 LMBR1LQ6UX01 489 aa19.62■□□□□ 0.73
SYNE1-227ENST00000489156 TTLL11Q8NHH1 800 aa19.62■□□□□ 0.73
SYNE1-227ENST00000489156 EXOC6BQ9Y2D4 811 aa19.62■□□□□ 0.73
SYNE1-227ENST00000489156 NOP58Q9Y2X3 529 aaKnown RBP19.62■□□□□ 0.73
SYNE1-227ENST00000489156 TAF1P21675 1872 aa19.62■□□□□ 0.73
SYNE1-227ENST00000489156 BMP2KLQ5H9B9 411 aa19.62■□□□□ 0.73
SYNE1-227ENST00000489156 KIF13BQ9NQT8 1826 aa19.62■□□□□ 0.73
SYNE1-227ENST00000489156 PLEKHM2Q8IWE5 1019 aa19.61■□□□□ 0.73
SYNE1-227ENST00000489156 PPP1R1BQ9UD71 204 aaPredicted RBP19.61■□□□□ 0.73
SYNE1-227ENST00000489156 CHMP3Q9Y3E7 222 aa19.61■□□□□ 0.73
SYNE1-227ENST00000489156 RIC1Q4ADV7 1423 aa19.61■□□□□ 0.73
SYNE1-227ENST00000489156 C10orf71Q711Q0 1435 aa19.61■□□□□ 0.73
SYNE1-227ENST00000489156 SURF6O75683 361 aaKnown RBP19.6■□□□□ 0.73
SYNE1-227ENST00000489156 CSF1RP07333 972 aa19.6■□□□□ 0.73
SYNE1-227ENST00000489156 RABL6Q3YEC7 729 aaPredicted RBP19.6■□□□□ 0.73
SYNE1-227ENST00000489156 KLHL34Q8N239 644 aa19.6■□□□□ 0.73
SYNE1-227ENST00000489156 PDE6BP35913 854 aa19.6■□□□□ 0.73
SYNE1-227ENST00000489156 SF3B3Q15393 1217 aaKnown RBP19.6■□□□□ 0.73
SYNE1-227ENST00000489156 GREM2Q9H772 168 aa19.59■□□□□ 0.73
SYNE1-227ENST00000489156 KLRG2A4D1S0 409 aaPredicted RBP19.58■□□□□ 0.73
SYNE1-227ENST00000489156 APBB1O00213 710 aa19.58■□□□□ 0.73
SYNE1-227ENST00000489156 CCDC152Q4G0S7 254 aa19.58■□□□□ 0.73
SYNE1-227ENST00000489156 KIF1BPQ96EK5 621 aa19.58■□□□□ 0.73
SYNE1-227ENST00000489156 CRY2Q49AN0 593 aa19.58■□□□□ 0.72
SYNE1-227ENST00000489156 OSBPL3Q9H4L5 887 aa19.58■□□□□ 0.72
SYNE1-227ENST00000489156 COL11A2P13942 1736 aaPredicted RBP19.58■□□□□ 0.72
SYNE1-227ENST00000489156 SMARCA5O60264 1052 aaPredicted RBP19.57■□□□□ 0.72
SYNE1-227ENST00000489156 CHRNA5P30532 468 aa19.57■□□□□ 0.72
SYNE1-227ENST00000489156 ERC1Q8IUD2 1116 aa19.57■□□□□ 0.72
SYNE1-227ENST00000489156 SEC31BQ9NQW1 1179 aa19.57■□□□□ 0.72
SYNE1-227ENST00000489156 ITGA6P23229 1130 aa19.56■□□□□ 0.72
SYNE1-227ENST00000489156 C2CD5Q86YS7 1000 aa19.56■□□□□ 0.72
SYNE1-227ENST00000489156 C16orf71Q8IYS4 520 aaPredicted RBP19.56■□□□□ 0.72
SYNE1-227ENST00000489156 H0YIN7 160 aa19.56■□□□□ 0.72
SYNE1-227ENST00000489156 SRGNP10124 158 aa19.56■□□□□ 0.72
SYNE1-227ENST00000489156 RHPN1Q8TCX5 695 aa19.56■□□□□ 0.72
SYNE1-227ENST00000489156 RPGRQ92834 1020 aaKnown RBP19.56■□□□□ 0.72
SYNE1-227ENST00000489156 CACNA1SQ13698 1873 aa19.55■□□□□ 0.72
SYNE1-227ENST00000489156 IFIT5Q13325 482 aaKnown RBP19.55■□□□□ 0.72
SYNE1-227ENST00000489156 CCDC57Q2TAC2 916 aa19.55■□□□□ 0.72
SYNE1-227ENST00000489156 CD2APQ9Y5K6 639 aa19.55■□□□□ 0.72
SYNE1-227ENST00000489156 SPEF2Q9C093 1822 aa19.54■□□□□ 0.72
SYNE1-227ENST00000489156 A0A0G2JLW4 131 aa19.54■□□□□ 0.72
SYNE1-227ENST00000489156 DDX46Q7L014 1031 aaKnown RBP19.54■□□□□ 0.72
SYNE1-227ENST00000489156 KIAA1551Q9HCM1 1747 aa19.54■□□□□ 0.72
SYNE1-227ENST00000489156 COL4A1P02462 1669 aa19.54■□□□□ 0.72
SYNE1-227ENST00000489156 SALL3Q9BXA9 1300 aa19.54■□□□□ 0.72
SYNE1-227ENST00000489156 TTC22Q5TAA0 569 aa19.54■□□□□ 0.72
SYNE1-227ENST00000489156 KLHDC4Q8TBB5 520 aa19.54■□□□□ 0.72
SYNE1-227ENST00000489156 ZNF622Q969S3 477 aaKnown RBP eCLIP19.54■□□□□ 0.72
SYNE1-227ENST00000489156 ZNF594Q96JF6 807 aaPredicted RBP19.54■□□□□ 0.72
SYNE1-227ENST00000489156 ANKRD18BA2A2Z9 1011 aa19.53■□□□□ 0.72
SYNE1-227ENST00000489156 NPR1P16066 1061 aa19.53■□□□□ 0.72
SYNE1-227ENST00000489156 DPEP1P16444 411 aa19.53■□□□□ 0.72
SYNE1-227ENST00000489156 RFX5P48382 616 aaPredicted RBP19.53■□□□□ 0.72
SYNE1-227ENST00000489156 PDE1AP54750 535 aa19.53■□□□□ 0.72
SYNE1-227ENST00000489156 TGFB2P61812 414 aa19.53■□□□□ 0.72
SYNE1-227ENST00000489156 MASTLQ96GX5 879 aa19.53■□□□□ 0.72
SYNE1-227ENST00000489156 RBM17Q96I25 401 aaKnown RBP19.53■□□□□ 0.72
SYNE1-227ENST00000489156 FHDC1Q9C0D6 1143 aaPredicted RBP19.53■□□□□ 0.72
SYNE1-227ENST00000489156 COPRSQ9NQ92 184 aa19.53■□□□□ 0.72
SYNE1-227ENST00000489156 GOLGB1Q14789 3259 aaKnown RBP19.53■□□□□ 0.72
SYNE1-227ENST00000489156 RTL9Q8NET4 1388 aa19.53■□□□□ 0.72
SYNE1-227ENST00000489156 DLEC1Q9Y238 1755 aa19.52■□□□□ 0.72
SYNE1-227ENST00000489156 HOXA10P31260 410 aaPredicted RBP19.52■□□□□ 0.72
SYNE1-227ENST00000489156 OS9Q13438 667 aaPredicted RBP19.52■□□□□ 0.72
SYNE1-227ENST00000489156 CELF1Q92879 486 aaKnown RBP19.52■□□□□ 0.72
SYNE1-227ENST00000489156 STAP2Q9UGK3 403 aa19.52■□□□□ 0.72
Retrieved 100 of 20,778 RNA–protein pairs in 15.5 ms