RNA–Protein interactions for RNA: ENST00000485618.1

SF3A1-208, Transcript of splicing factor 3a subunit 1, humanhuman

TSL 2

Gene SF3A1, Length 593 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SF3A1-208ENST00000485618 GRIPAP1Q4V328 841 aa10.41□□□□□ -0.74
SF3A1-208ENST00000485618 BEND3Q5T5X7 828 aa10.41□□□□□ -0.74
SF3A1-208ENST00000485618 SOGA3Q5TF21 947 aa10.41□□□□□ -0.74
SF3A1-208ENST00000485618 DDX46Q7L014 1031 aaKnown RBP10.41□□□□□ -0.74
SF3A1-208ENST00000485618 NUTM1Q86Y26 1132 aa10.41□□□□□ -0.74
SF3A1-208ENST00000485618 SMC1BQ8NDV3 1235 aa10.41□□□□□ -0.74
SF3A1-208ENST00000485618 BCORQ6W2J9 1755 aa10.41□□□□□ -0.74
SF3A1-208ENST00000485618 SBF1O95248 1867 aa10.4□□□□□ -0.74
SF3A1-208ENST00000485618 KLRG2A4D1S0 409 aaPredicted RBP10.4□□□□□ -0.74
SF3A1-208ENST00000485618 H7C1W4 665 aa10.4□□□□□ -0.74
SF3A1-208ENST00000485618 GRM8O00222 908 aa10.4□□□□□ -0.74
SF3A1-208ENST00000485618 PDE8AO60658 829 aa10.4□□□□□ -0.74
SF3A1-208ENST00000485618 GNAI3P08754 354 aa10.4□□□□□ -0.74
SF3A1-208ENST00000485618 SRGNP10124 158 aa10.4□□□□□ -0.74
SF3A1-208ENST00000485618 LMNB1P20700 586 aa10.4□□□□□ -0.74
SF3A1-208ENST00000485618 CWF19L2Q2TBE0 894 aaKnown RBP10.4□□□□□ -0.74
SF3A1-208ENST00000485618 TMC4Q7Z404 712 aa10.4□□□□□ -0.74
SF3A1-208ENST00000485618 DZIP1LQ8IYY4 767 aaKnown RBP10.4□□□□□ -0.74
SF3A1-208ENST00000485618 CDHR2Q9BYE9 1310 aa10.39□□□□□ -0.75
SF3A1-208ENST00000485618 BBOX1O75936 387 aa10.39□□□□□ -0.75
SF3A1-208ENST00000485618 HCLS1P14317 486 aaPredicted RBP10.39□□□□□ -0.75
SF3A1-208ENST00000485618 HOXA10P31260 410 aaPredicted RBP10.39□□□□□ -0.75
SF3A1-208ENST00000485618 INTS3Q68E01 1043 aaKnown RBP10.39□□□□□ -0.75
SF3A1-208ENST00000485618 UBE3BQ7Z3V4 1068 aa10.39□□□□□ -0.75
SF3A1-208ENST00000485618 CRAMP1Q96RY5 1269 aa10.39□□□□□ -0.75
SF3A1-208ENST00000485618 RIC1Q4ADV7 1423 aa10.39□□□□□ -0.75
SF3A1-208ENST00000485618 UBTFL1P0CB47 393 aaPredicted RBP10.38□□□□□ -0.75
SF3A1-208ENST00000485618 SF3B3Q15393 1217 aaKnown RBP10.38□□□□□ -0.75
SF3A1-208ENST00000485618 CRY2Q49AN0 593 aa10.38□□□□□ -0.75
SF3A1-208ENST00000485618 RTL5Q5HYW3 569 aaPredicted RBP10.38□□□□□ -0.75
SF3A1-208ENST00000485618 CC2D2BQ6DHV5 1058 aa10.38□□□□□ -0.75
SF3A1-208ENST00000485618 CCDC24Q8N4L8 307 aa10.38□□□□□ -0.75
SF3A1-208ENST00000485618 JMYQ8N9B5 988 aa10.38□□□□□ -0.75
SF3A1-208ENST00000485618 COL11A2P13942 1736 aaPredicted RBP10.38□□□□□ -0.75
SF3A1-208ENST00000485618 GLTPD2A6NH11 291 aa10.37□□□□□ -0.75
SF3A1-208ENST00000485618 NFKBIEO00221 500 aa10.37□□□□□ -0.75
SF3A1-208ENST00000485618 TRIM27P14373 513 aa10.37□□□□□ -0.75
SF3A1-208ENST00000485618 VEGFAP15692 232 aaPredicted RBP10.37□□□□□ -0.75
SF3A1-208ENST00000485618 PDE3AQ14432 1141 aa10.37□□□□□ -0.75
SF3A1-208ENST00000485618 CDC5LQ99459 802 aaKnown RBP10.37□□□□□ -0.75
SF3A1-208ENST00000485618 PLA2G12BQ9BX93 195 aa10.37□□□□□ -0.75
SF3A1-208ENST00000485618 ANKRD36CQ5JPF3 1778 aa10.37□□□□□ -0.75
SF3A1-208ENST00000485618 ARFGEF2Q9Y6D5 1785 aa10.37□□□□□ -0.75
SF3A1-208ENST00000485618 ABCC4O15439 1325 aa10.36□□□□□ -0.75
SF3A1-208ENST00000485618 ANKRD31Q8N7Z5 1873 aa10.36□□□□□ -0.75
SF3A1-208ENST00000485618 CTSWP56202 376 aa10.36□□□□□ -0.75
SF3A1-208ENST00000485618 CCDC57Q2TAC2 916 aa10.36□□□□□ -0.75
SF3A1-208ENST00000485618 TAF7LQ5H9L4 462 aa10.36□□□□□ -0.75
SF3A1-208ENST00000485618 RTKN2Q8IZC4 609 aa10.36□□□□□ -0.75
SF3A1-208ENST00000485618 CLUAP1Q96AJ1 413 aa10.36□□□□□ -0.75
SF3A1-208ENST00000485618 PCDH10Q9P2E7 1040 aa10.36□□□□□ -0.75
SF3A1-208ENST00000485618 ZNF219Q9P2Y4 722 aaPredicted RBP10.36□□□□□ -0.75
SF3A1-208ENST00000485618 UTYO14607 1347 aa10.35□□□□□ -0.75
SF3A1-208ENST00000485618 ANKRD18BA2A2Z9 1011 aa10.35□□□□□ -0.75
SF3A1-208ENST00000485618 IGHMBP2P38935 993 aaKnown RBP10.35□□□□□ -0.75
SF3A1-208ENST00000485618 RPS8P62241 208 aaKnown RBP10.35□□□□□ -0.75
SF3A1-208ENST00000485618 IFIT5Q13325 482 aaKnown RBP10.35□□□□□ -0.75
SF3A1-208ENST00000485618 GRAPQ13588 217 aa10.35□□□□□ -0.75
SF3A1-208ENST00000485618 PRPF40BQ6NWY9 871 aaKnown RBP10.35□□□□□ -0.75
SF3A1-208ENST00000485618 ANKRD18AQ8IVF6 992 aa10.35□□□□□ -0.75
SF3A1-208ENST00000485618 ITPRIPQ8IWB1 547 aa10.35□□□□□ -0.75
SF3A1-208ENST00000485618 GRAPLQ8TC17 118 aaPredicted RBP10.35□□□□□ -0.75
SF3A1-208ENST00000485618 MPHOSPH8Q99549 860 aa10.35□□□□□ -0.75
SF3A1-208ENST00000485618 USP44Q9H0E7 712 aa10.35□□□□□ -0.75
SF3A1-208ENST00000485618 DDX19BQ9UMR2 479 aa10.35□□□□□ -0.75
SF3A1-208ENST00000485618 CHMP3Q9Y3E7 222 aa10.35□□□□□ -0.75
SF3A1-208ENST00000485618 C21orf2O43822 256 aa10.34□□□□□ -0.75
SF3A1-208ENST00000485618 GNAI2P04899 355 aa10.34□□□□□ -0.75
SF3A1-208ENST00000485618 CENPBP07199 599 aaPredicted RBP10.34□□□□□ -0.75
SF3A1-208ENST00000485618 CCDC93Q567U6 631 aa10.34□□□□□ -0.75
SF3A1-208ENST00000485618 SYNE4Q8N205 404 aa10.34□□□□□ -0.75
SF3A1-208ENST00000485618 TTLL11Q8NHH1 800 aa10.34□□□□□ -0.75
SF3A1-208ENST00000485618 JARID2Q92833 1246 aaPredicted RBP10.34□□□□□ -0.75
SF3A1-208ENST00000485618 ABCC12Q96J65 1359 aa10.34□□□□□ -0.75
SF3A1-208ENST00000485618 PPEF1O14829 653 aaPredicted RBP10.33□□□□□ -0.76
SF3A1-208ENST00000485618 CSF1RP07333 972 aa10.33□□□□□ -0.76
SF3A1-208ENST00000485618 NBPF7P0C2Y1 421 aaPredicted RBP10.33□□□□□ -0.76
SF3A1-208ENST00000485618 HSPA1AP0DMV8 641 aaKnown RBP10.33□□□□□ -0.76
SF3A1-208ENST00000485618 HSPA1BP0DMV9 641 aaKnown RBP10.33□□□□□ -0.76
SF3A1-208ENST00000485618 CASP7P55210 303 aa10.33□□□□□ -0.76
SF3A1-208ENST00000485618 DPY19L2Q6NUT2 758 aa10.33□□□□□ -0.76
SF3A1-208ENST00000485618 LMBR1LQ6UX01 489 aa10.33□□□□□ -0.76
SF3A1-208ENST00000485618 SP8Q8IXZ3 490 aa10.33□□□□□ -0.76
SF3A1-208ENST00000485618 TMEM57Q8N5G2 664 aa10.33□□□□□ -0.76
SF3A1-208ENST00000485618 SUPT20HQ8NEM7 779 aa10.33□□□□□ -0.76
SF3A1-208ENST00000485618 RTL9Q8NET4 1388 aa10.33□□□□□ -0.76
SF3A1-208ENST00000485618 CCDC88AQ3V6T2 1871 aa10.33□□□□□ -0.76
SF3A1-208ENST00000485618 CACNA1SQ13698 1873 aa10.32□□□□□ -0.76
SF3A1-208ENST00000485618 AAMPQ13685 434 aa10.32□□□□□ -0.76
SF3A1-208ENST00000485618 ANKRD2Q9GZV1 360 aa10.32□□□□□ -0.76
SF3A1-208ENST00000485618 TAOK3Q9H2K8 898 aa10.32□□□□□ -0.76
SF3A1-208ENST00000485618 ATP6V0A2Q9Y487 856 aa10.32□□□□□ -0.76
SF3A1-208ENST00000485618 FER1L6Q2WGJ9 1857 aa10.32□□□□□ -0.76
SF3A1-208ENST00000485618 ITGA6P23229 1130 aa10.31□□□□□ -0.76
SF3A1-208ENST00000485618 FOXO4P98177 505 aa10.31□□□□□ -0.76
SF3A1-208ENST00000485618 MVPQ14764 893 aaKnown RBP10.31□□□□□ -0.76
SF3A1-208ENST00000485618 PANK1Q8TE04 598 aa10.31□□□□□ -0.76
SF3A1-208ENST00000485618 CCDC85AQ96PX6 553 aaPredicted RBP10.31□□□□□ -0.76
SF3A1-208ENST00000485618 VPS33BQ9H267 617 aa10.31□□□□□ -0.76
SF3A1-208ENST00000485618 GREM2Q9H772 168 aa10.31□□□□□ -0.76
Retrieved 100 of 20,778 RNA–protein pairs in 11.9 ms