RNA–Protein interactions for RNA: ENST00000485610.5

SMARCD3-212, Transcript of SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily d, member 3, humanhuman

TSL 1 (best)

Gene SMARCD3, Length 1,480 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMARCD3-212ENST00000485610 CHMP3Q9Y3E7 222 aa22.08■■□□□ 1.12
SMARCD3-212ENST00000485610 IGHDP01880 384 aa22.07■■□□□ 1.12
SMARCD3-212ENST00000485610 TTLL11Q8NHH1 800 aa22.07■■□□□ 1.12
SMARCD3-212ENST00000485610 MTFR1LQ9H019 292 aa22.07■■□□□ 1.12
SMARCD3-212ENST00000485610 KDM2BQ8NHM5 1336 aa22.07■■□□□ 1.12
SMARCD3-212ENST00000485610 RTL9Q8NET4 1388 aa22.07■■□□□ 1.12
SMARCD3-212ENST00000485610 TAF1P21675 1872 aa22.07■■□□□ 1.12
SMARCD3-212ENST00000485610 LRP5O75197 1615 aa22.06■■□□□ 1.12
SMARCD3-212ENST00000485610 COL11A2P13942 1736 aaPredicted RBP22.06■■□□□ 1.12
SMARCD3-212ENST00000485610 CENPQQ7L2Z9 268 aaPredicted RBP22.06■■□□□ 1.12
SMARCD3-212ENST00000485610 ZBTB7AO95365 584 aa22.05■■□□□ 1.12
SMARCD3-212ENST00000485610 FAM161AQ3B820 660 aa22.05■■□□□ 1.12
SMARCD3-212ENST00000485610 CCDC152Q4G0S7 254 aa22.05■■□□□ 1.12
SMARCD3-212ENST00000485610 CCDC24Q8N4L8 307 aa22.05■■□□□ 1.12
SMARCD3-212ENST00000485610 NLRP3Q96P20 1036 aa22.05■■□□□ 1.12
SMARCD3-212ENST00000485610 SF3B3Q15393 1217 aaKnown RBP22.04■■□□□ 1.12
SMARCD3-212ENST00000485610 RFX5P48382 616 aaPredicted RBP22.03■■□□□ 1.12
SMARCD3-212ENST00000485610 CCDC57Q2TAC2 916 aa22.03■■□□□ 1.12
SMARCD3-212ENST00000485610 CCDC85AQ96PX6 553 aaPredicted RBP22.03■■□□□ 1.12
SMARCD3-212ENST00000485610 GREM2Q9H772 168 aa22.03■■□□□ 1.12
SMARCD3-212ENST00000485610 DLEC1Q9Y238 1755 aa22.03■■□□□ 1.12
SMARCD3-212ENST00000485610 IFIT5Q13325 482 aaKnown RBP22.03■■□□□ 1.12
SMARCD3-212ENST00000485610 C3orf67Q6ZVT6 689 aa22.03■■□□□ 1.12
SMARCD3-212ENST00000485610 GCC1Q96CN9 775 aa22.03■■□□□ 1.12
SMARCD3-212ENST00000485610 DCTPP1Q9H773 170 aa22.03■■□□□ 1.12
SMARCD3-212ENST00000485610 C10orf71Q711Q0 1435 aa22.02■■□□□ 1.12
SMARCD3-212ENST00000485610 CACNA1SQ13698 1873 aa22.02■■□□□ 1.12
SMARCD3-212ENST00000485610 SMC5Q8IY18 1101 aa22.02■■□□□ 1.12
SMARCD3-212ENST00000485610 BRIP1Q9BX63 1249 aa22.02■■□□□ 1.12
SMARCD3-212ENST00000485610 A0A1B0GUL6 1792 aa22.01■■□□□ 1.11
SMARCD3-212ENST00000485610 ANKRD18BA2A2Z9 1011 aa22.01■■□□□ 1.11
SMARCD3-212ENST00000485610 ITGA6P23229 1130 aa22.01■■□□□ 1.11
SMARCD3-212ENST00000485610 POLD1P28340 1107 aa22.01■■□□□ 1.11
SMARCD3-212ENST00000485610 COPRSQ9NQ92 184 aa22.01■■□□□ 1.11
SMARCD3-212ENST00000485610 NOP58Q9Y2X3 529 aaKnown RBP22■■□□□ 1.11
SMARCD3-212ENST00000485610 SURF6O75683 361 aaKnown RBP21.99■■□□□ 1.11
SMARCD3-212ENST00000485610 PTPN12Q05209 780 aaKnown RBP21.99■■□□□ 1.11
SMARCD3-212ENST00000485610 CRY2Q49AN0 593 aa21.99■■□□□ 1.11
SMARCD3-212ENST00000485610 HSP90AB4PQ58FF6 505 aa21.99■■□□□ 1.11
SMARCD3-212ENST00000485610 TAF7LQ5H9L4 462 aa21.99■■□□□ 1.11
SMARCD3-212ENST00000485610 PA2G4Q9UQ80 394 aaKnown RBP21.99■■□□□ 1.11
SMARCD3-212ENST00000485610 ATF5Q9Y2D1 282 aaPredicted RBP21.99■■□□□ 1.11
SMARCD3-212ENST00000485610 EXOC6BQ9Y2D4 811 aa21.99■■□□□ 1.11
SMARCD3-212ENST00000485610 COL4A1P02462 1669 aa21.99■■□□□ 1.11
SMARCD3-212ENST00000485610 KLHDC4Q8TBB5 520 aa21.98■■□□□ 1.11
SMARCD3-212ENST00000485610 KLRG2A4D1S0 409 aaPredicted RBP21.97■■□□□ 1.11
SMARCD3-212ENST00000485610 SOCS7O14512 581 aa21.97■■□□□ 1.11
SMARCD3-212ENST00000485610 PDE6BP35913 854 aa21.97■■□□□ 1.11
SMARCD3-212ENST00000485610 CDC5LQ99459 802 aaKnown RBP21.97■■□□□ 1.11
SMARCD3-212ENST00000485610 OS9Q13438 667 aaPredicted RBP21.96■■□□□ 1.11
SMARCD3-212ENST00000485610 RPGRQ92834 1020 aaKnown RBP21.96■■□□□ 1.11
SMARCD3-212ENST00000485610 SEC31BQ9NQW1 1179 aa21.96■■□□□ 1.11
SMARCD3-212ENST00000485610 FBXO3Q9UK99 471 aa21.96■■□□□ 1.11
SMARCD3-212ENST00000485610 KIAA1551Q9HCM1 1747 aa21.96■■□□□ 1.11
SMARCD3-212ENST00000485610 RAB11FIP3O75154 756 aa21.96■■□□□ 1.11
SMARCD3-212ENST00000485610 G3BP1Q13283 466 aaKnown RBP eCLIP21.96■■□□□ 1.11
SMARCD3-212ENST00000485610 DDX46Q7L014 1031 aaKnown RBP21.96■■□□□ 1.11
SMARCD3-212ENST00000485610 ZNF594Q96JF6 807 aaPredicted RBP21.96■■□□□ 1.11
SMARCD3-212ENST00000485610 SGIP1Q9BQI5 828 aa21.96■■□□□ 1.11
SMARCD3-212ENST00000485610 SIL1Q9H173 461 aa21.96■■□□□ 1.11
SMARCD3-212ENST00000485610 ERC1Q8IUD2 1116 aa21.95■■□□□ 1.1
SMARCD3-212ENST00000485610 LRRC37AA6NMS7 1700 aa21.94■■□□□ 1.1
SMARCD3-212ENST00000485610 EYA2O00167 538 aa21.94■■□□□ 1.1
SMARCD3-212ENST00000485610 CIAO1O76071 339 aa21.94■■□□□ 1.1
SMARCD3-212ENST00000485610 IGHMBP2P38935 993 aaKnown RBP21.94■■□□□ 1.1
SMARCD3-212ENST00000485610 PDZRN3Q9UPQ7 1066 aa21.94■■□□□ 1.1
SMARCD3-212ENST00000485610 HOXA10P31260 410 aaPredicted RBP21.93■■□□□ 1.1
SMARCD3-212ENST00000485610 ANKRD18AQ8IVF6 992 aa21.93■■□□□ 1.1
SMARCD3-212ENST00000485610 RBM17Q96I25 401 aaKnown RBP21.93■■□□□ 1.1
SMARCD3-212ENST00000485610 APBB1O00213 710 aa21.92■■□□□ 1.1
SMARCD3-212ENST00000485610 PTGER2P43116 358 aa21.92■■□□□ 1.1
SMARCD3-212ENST00000485610 NUCB1Q02818 461 aa21.92■■□□□ 1.1
SMARCD3-212ENST00000485610 LDHAL6AQ6ZMR3 332 aa21.92■■□□□ 1.1
SMARCD3-212ENST00000485610 KIF1BPQ96EK5 621 aa21.92■■□□□ 1.1
SMARCD3-212ENST00000485610 LRRCC1Q9C099 1032 aa21.92■■□□□ 1.1
SMARCD3-212ENST00000485610 SPON1Q9HCB6 807 aa21.92■■□□□ 1.1
SMARCD3-212ENST00000485610 ZBTB47Q9UFB7 747 aaPredicted RBP21.92■■□□□ 1.1
SMARCD3-212ENST00000485610 BRCA1P38398 1863 aaKnown RBP21.92■■□□□ 1.1
SMARCD3-212ENST00000485610 SRGNP10124 158 aa21.91■■□□□ 1.1
SMARCD3-212ENST00000485610 NPR1P16066 1061 aa21.91■■□□□ 1.1
SMARCD3-212ENST00000485610 IL15P40933 162 aaPredicted RBP21.91■■□□□ 1.1
SMARCD3-212ENST00000485610 GRAPQ13588 217 aa21.91■■□□□ 1.1
SMARCD3-212ENST00000485610 ANKRD45Q5TZF3 282 aa21.91■■□□□ 1.1
SMARCD3-212ENST00000485610 GRAPLQ8TC17 118 aaPredicted RBP21.91■■□□□ 1.1
SMARCD3-212ENST00000485610 CRAMP1Q96RY5 1269 aa21.91■■□□□ 1.1
SMARCD3-212ENST00000485610 MPHOSPH8Q99549 860 aa21.91■■□□□ 1.1
SMARCD3-212ENST00000485610 CNNM1Q9NRU3 951 aa21.91■■□□□ 1.1
SMARCD3-212ENST00000485610 LRRC24Q50LG9 513 aa21.9■■□□□ 1.1
SMARCD3-212ENST00000485610 ATG9AQ7Z3C6 839 aa21.9■■□□□ 1.1
SMARCD3-212ENST00000485610 C2CD5Q86YS7 1000 aa21.9■■□□□ 1.1
SMARCD3-212ENST00000485610 RHPN1Q8TCX5 695 aa21.9■■□□□ 1.1
SMARCD3-212ENST00000485610 CELF1Q92879 486 aaKnown RBP21.9■■□□□ 1.1
SMARCD3-212ENST00000485610 PUS3Q9BZE2 481 aaKnown RBP21.9■■□□□ 1.1
SMARCD3-212ENST00000485610 ARAP2Q8WZ64 1704 aa21.9■■□□□ 1.1
SMARCD3-212ENST00000485610 H0YIN7 160 aa21.9■■□□□ 1.1
SMARCD3-212ENST00000485610 RPS8P62241 208 aaKnown RBP21.9■■□□□ 1.1
SMARCD3-212ENST00000485610 MASTLQ96GX5 879 aa21.9■■□□□ 1.1
SMARCD3-212ENST00000485610 SASH1O94885 1247 aa21.89■■□□□ 1.09
SMARCD3-212ENST00000485610 CHD1LQ86WJ1 897 aa21.89■■□□□ 1.09
SMARCD3-212ENST00000485610 SLX4Q8IY92 1834 aa21.89■■□□□ 1.09
Retrieved 100 of 20,778 RNA–protein pairs in 25.8 ms