RNA–Protein interactions for RNA: ENST00000485550.5

HMGN1-215, Transcript of high mobility group nucleosome binding domain 1, human

TSL 5

Gene HMGN1, Length 745 nt, Biotype processed transcript, Subcellular localisation Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
HMGN1-215	ENST00000485550	CIAPIN1	Q6FI81	312 aa		13.91	□□□□□ -0.18
HMGN1-215	ENST00000485550	CCDC146	Q8IYE0	955 aa		13.91	□□□□□ -0.18
HMGN1-215	ENST00000485550	ZNF408	Q9H9D4	720 aa		13.91	□□□□□ -0.18
HMGN1-215	ENST00000485550	TSPYL4	Q9UJ04	414 aa		13.91	□□□□□ -0.18
HMGN1-215	ENST00000485550	TAF1	P21675	1872 aa		13.91	□□□□□ -0.18
HMGN1-215	ENST00000485550	DLG5	Q8TDM6	1919 aa		13.9	□□□□□ -0.18
HMGN1-215	ENST00000485550	CA12	O43570	354 aa		13.9	□□□□□ -0.18
HMGN1-215	ENST00000485550	EIF2S2	P20042	333 aa	Known RBP	13.9	□□□□□ -0.18
HMGN1-215	ENST00000485550	CC2D2B	Q6DHV5	1058 aa		13.9	□□□□□ -0.18
HMGN1-215	ENST00000485550	NIM1K	Q8IY84	436 aa		13.9	□□□□□ -0.18
HMGN1-215	ENST00000485550	RPGR	Q92834	1020 aa	Known RBP	13.9	□□□□□ -0.18
HMGN1-215	ENST00000485550	GLIS2	Q9BZE0	524 aa	Predicted RBP	13.9	□□□□□ -0.18
HMGN1-215	ENST00000485550	ZBTB3	Q9H5J0	574 aa		13.9	□□□□□ -0.18
HMGN1-215	ENST00000485550	LAMB2	P55268	1798 aa		13.9	□□□□□ -0.18
HMGN1-215	ENST00000485550	PPIP5K2	O43314	1243 aa		13.89	□□□□□ -0.19
HMGN1-215	ENST00000485550	GPT	P24298	496 aa		13.89	□□□□□ -0.19
HMGN1-215	ENST00000485550	TMPO	P42166	694 aa	Known RBP	13.89	□□□□□ -0.19
HMGN1-215	ENST00000485550	BRPF1	P55201	1214 aa	Predicted RBP	13.89	□□□□□ -0.19
HMGN1-215	ENST00000485550	AOC3	Q16853	763 aa		13.89	□□□□□ -0.19
HMGN1-215	ENST00000485550	ZIC5	Q96T25	663 aa		13.89	□□□□□ -0.19
HMGN1-215	ENST00000485550	ADARB2	Q9NS39	739 aa	Known RBP	13.89	□□□□□ -0.19
HMGN1-215	ENST00000485550	GPRC5D	Q9NZD1	345 aa		13.89	□□□□□ -0.19
HMGN1-215	ENST00000485550	PPEF1	O14829	653 aa	Predicted RBP	13.88	□□□□□ -0.19
HMGN1-215	ENST00000485550	KIF6	Q6ZMV9	814 aa		13.88	□□□□□ -0.19
HMGN1-215	ENST00000485550	NYX	Q9GZU5	481 aa		13.88	□□□□□ -0.19
HMGN1-215	ENST00000485550	MAP3K15	Q6ZN16	1313 aa		13.88	□□□□□ -0.19
HMGN1-215	ENST00000485550	MYBBP1A	Q9BQG0	1328 aa	Known RBP	13.88	□□□□□ -0.19
HMGN1-215	ENST00000485550	ERVV-1	B6SEH8	477 aa		13.87	□□□□□ -0.19
HMGN1-215	ENST00000485550	RGL2	O15211	777 aa		13.87	□□□□□ -0.19
HMGN1-215	ENST00000485550	ANXA1	P04083	346 aa		13.87	□□□□□ -0.19
HMGN1-215	ENST00000485550	NECTIN2	Q92692	538 aa		13.87	□□□□□ -0.19
HMGN1-215	ENST00000485550	RBM17	Q96I25	401 aa	Known RBP	13.87	□□□□□ -0.19
HMGN1-215	ENST00000485550	HOXA10	P31260	410 aa	Predicted RBP	13.86	□□□□□ -0.19
HMGN1-215	ENST00000485550	GMPS	P49915	693 aa	Predicted RBP	13.86	□□□□□ -0.19
HMGN1-215	ENST00000485550	SOX10	P56693	466 aa		13.86	□□□□□ -0.19
HMGN1-215	ENST00000485550	CXCL9	Q07325	125 aa		13.86	□□□□□ -0.19
HMGN1-215	ENST00000485550	HHIPL1	Q96JK4	782 aa		13.86	□□□□□ -0.19
HMGN1-215	ENST00000485550	LAS1L	Q9Y4W2	734 aa	Known RBP	13.86	□□□□□ -0.19
HMGN1-215	ENST00000485550	RIC1	Q4ADV7	1423 aa		13.86	□□□□□ -0.19
HMGN1-215	ENST00000485550	UBN2	Q6ZU65	1347 aa		13.86	□□□□□ -0.19
HMGN1-215	ENST00000485550	KDM3B	Q7LBC6	1761 aa		13.86	□□□□□ -0.19
HMGN1-215	ENST00000485550	WDR43	Q15061	677 aa	Known RBP eCLIP	13.85	□□□□□ -0.19
HMGN1-215	ENST00000485550	PROSER3	Q2NL68	480 aa		13.85	□□□□□ -0.19
HMGN1-215	ENST00000485550	GRIPAP1	Q4V328	841 aa		13.85	□□□□□ -0.19
HMGN1-215	ENST00000485550	SUSD4	Q5VX71	490 aa		13.85	□□□□□ -0.19
HMGN1-215	ENST00000485550	C3orf67	Q6ZVT6	689 aa		13.85	□□□□□ -0.19
HMGN1-215	ENST00000485550	CRAMP1	Q96RY5	1269 aa		13.85	□□□□□ -0.19
HMGN1-215	ENST00000485550	ANKRD36C	Q5JPF3	1778 aa		13.84	□□□□□ -0.19
HMGN1-215	ENST00000485550	HIRA	P54198	1017 aa	Predicted RBP	13.84	□□□□□ -0.19
HMGN1-215	ENST00000485550	LMOD3	Q0VAK6	560 aa		13.84	□□□□□ -0.19
HMGN1-215	ENST00000485550	PDIA6	Q15084	440 aa		13.84	□□□□□ -0.19
HMGN1-215	ENST00000485550	KRT24	Q2M2I5	525 aa		13.84	□□□□□ -0.19
HMGN1-215	ENST00000485550	DLK2	Q6UY11	383 aa		13.84	□□□□□ -0.19
HMGN1-215	ENST00000485550	TRPM4	Q8TD43	1214 aa		13.84	□□□□□ -0.19
HMGN1-215	ENST00000485550	BCL2L13	Q9BXK5	485 aa		13.84	□□□□□ -0.19
HMGN1-215	ENST00000485550	ADAMTS8	Q9UP79	889 aa		13.84	□□□□□ -0.19
HMGN1-215	ENST00000485550	SHTN1	A0MZ66	631 aa		13.83	□□□□□ -0.2
HMGN1-215	ENST00000485550	HUNK	P57058	714 aa		13.83	□□□□□ -0.2
HMGN1-215	ENST00000485550	AIMP1	Q12904	312 aa	Known RBP	13.83	□□□□□ -0.2
HMGN1-215	ENST00000485550	NOG	Q13253	232 aa		13.83	□□□□□ -0.2
HMGN1-215	ENST00000485550	GIGYF2	Q6Y7W6	1299 aa	Known RBP	13.83	□□□□□ -0.2
HMGN1-215	ENST00000485550	ZNF34	Q8IZ26	560 aa		13.83	□□□□□ -0.2
HMGN1-215	ENST00000485550	RUNDC1	Q96C34	613 aa		13.83	□□□□□ -0.2
HMGN1-215	ENST00000485550	PGAP2	Q9UHJ9	254 aa		13.83	□□□□□ -0.2
HMGN1-215	ENST00000485550	ZNRF3	Q9ULT6	936 aa		13.83	□□□□□ -0.2
HMGN1-215	ENST00000485550	RAD17	O75943	681 aa		13.82	□□□□□ -0.2
HMGN1-215	ENST00000485550	CDC37L1	Q7L3B6	337 aa		13.82	□□□□□ -0.2
HMGN1-215	ENST00000485550	LRP10	Q7Z4F1	713 aa		13.82	□□□□□ -0.2
HMGN1-215	ENST00000485550	USP48	Q86UV5	1035 aa		13.82	□□□□□ -0.2
HMGN1-215	ENST00000485550	ZNF428	Q96B54	188 aa		13.82	□□□□□ -0.2
HMGN1-215	ENST00000485550	TMX4	Q9H1E5	349 aa	Predicted RBP	13.82	□□□□□ -0.2
HMGN1-215	ENST00000485550	TRIM35	Q9UPQ4	493 aa		13.82	□□□□□ -0.2
HMGN1-215	ENST00000485550	ERBB4	Q15303	1308 aa		13.82	□□□□□ -0.2
HMGN1-215	ENST00000485550	IBTK	Q9P2D0	1353 aa	Predicted RBP	13.82	□□□□□ -0.2
HMGN1-215	ENST00000485550	NTSR2	O95665	410 aa		13.81	□□□□□ -0.2
HMGN1-215	ENST00000485550	COPS6	Q7L5N1	327 aa		13.81	□□□□□ -0.2
HMGN1-215	ENST00000485550	XAGE3	Q8WTP9	111 aa		13.81	□□□□□ -0.2
HMGN1-215	ENST00000485550	BABAM1	Q9NWV8	329 aa		13.81	□□□□□ -0.2
HMGN1-215	ENST00000485550	ATP6V0A2	Q9Y487	856 aa		13.81	□□□□□ -0.2
HMGN1-215	ENST00000485550	CHL1	O00533	1208 aa		13.8	□□□□□ -0.2
HMGN1-215	ENST00000485550	PPP1R42	Q7Z4L9	355 aa		13.8	□□□□□ -0.2
HMGN1-215	ENST00000485550	SUPT20H	Q8NEM7	779 aa		13.8	□□□□□ -0.2
HMGN1-215	ENST00000485550	ZC3H15	Q8WU90	426 aa	Known RBP	13.8	□□□□□ -0.2
HMGN1-215	ENST00000485550	VPS33B	Q9H267	617 aa		13.8	□□□□□ -0.2
HMGN1-215	ENST00000485550	PRKRIP1	Q9H875	184 aa	Predicted RBP	13.8	□□□□□ -0.2
HMGN1-215	ENST00000485550	CNOT7	Q9UIV1	285 aa	Known RBP	13.8	□□□□□ -0.2
HMGN1-215	ENST00000485550	ABCC4	O15439	1325 aa		13.8	□□□□□ -0.2
HMGN1-215	ENST00000485550	TRPA1	O75762	1119 aa		13.79	□□□□□ -0.2
HMGN1-215	ENST00000485550	PARP10	Q53GL7	1025 aa		13.79	□□□□□ -0.2
HMGN1-215	ENST00000485550	RGMB	Q6NW40	437 aa		13.79	□□□□□ -0.2
HMGN1-215	ENST00000485550	DPP8	Q6V1X1	898 aa	Predicted RBP	13.79	□□□□□ -0.2
HMGN1-215	ENST00000485550	MICALL2	Q8IY33	904 aa		13.79	□□□□□ -0.2
HMGN1-215	ENST00000485550	NLRP3	Q96P20	1036 aa		13.79	□□□□□ -0.2
HMGN1-215	ENST00000485550	UTP14A	Q9BVJ6	771 aa	Known RBP	13.79	□□□□□ -0.2
HMGN1-215	ENST00000485550	YDJC	A8MPS7	323 aa		13.78	□□□□□ -0.2
HMGN1-215	ENST00000485550	FAM155A	B1AL88	458 aa	Predicted RBP	13.78	□□□□□ -0.2
HMGN1-215	ENST00000485550		H7C1D1	291 aa		13.78	□□□□□ -0.2
HMGN1-215	ENST00000485550	KIF23	Q02241	960 aa	Predicted RBP	13.78	□□□□□ -0.2
HMGN1-215	ENST00000485550	KIAA2012	Q0VF49	1180 aa		13.78	□□□□□ -0.2
HMGN1-215	ENST00000485550	TNIP1	Q15025	636 aa		13.78	□□□□□ -0.2

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