RNA–Protein interactions for RNA: ENST00000484246.5

UPF3A-208, Transcript of UPF3A, regulator of nonsense mediated mRNA decay, humanhuman

TSL 3

Gene UPF3A, Length 699 nt, Biotype processed transcript.

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF3A-208ENST00000484246 GRAPLQ8TC17 118 aaPredicted RBP20.17■□□□□ 0.82
UPF3A-208ENST00000484246 SLX4Q8IY92 1834 aa20.17■□□□□ 0.82
UPF3A-208ENST00000484246 BBOX1O75936 387 aa20.16■□□□□ 0.82
UPF3A-208ENST00000484246 RTL5Q5HYW3 569 aaPredicted RBP20.16■□□□□ 0.82
UPF3A-208ENST00000484246 ARHGAP45Q92619 1136 aa20.16■□□□□ 0.82
UPF3A-208ENST00000484246 SRCIN1Q9C0H9 1055 aa20.16■□□□□ 0.82
UPF3A-208ENST00000484246 ZC3H4Q9UPT8 1303 aaKnown RBP20.16■□□□□ 0.82
UPF3A-208ENST00000484246 PPEF1O14829 653 aaPredicted RBP20.15■□□□□ 0.82
UPF3A-208ENST00000484246 CTSWP56202 376 aa20.15■□□□□ 0.82
UPF3A-208ENST00000484246 CCDC152Q4G0S7 254 aa20.15■□□□□ 0.82
UPF3A-208ENST00000484246 UBE3BQ7Z3V4 1068 aa20.15■□□□□ 0.82
UPF3A-208ENST00000484246 RTKN2Q8IZC4 609 aa20.15■□□□□ 0.82
UPF3A-208ENST00000484246 TAOK3Q9H2K8 898 aa20.15■□□□□ 0.82
UPF3A-208ENST00000484246 CHD4Q14839 1912 aa20.15■□□□□ 0.82
UPF3A-208ENST00000484246 UTYO14607 1347 aa20.14■□□□□ 0.81
UPF3A-208ENST00000484246 GRM8O00222 908 aa20.14■□□□□ 0.81
UPF3A-208ENST00000484246 RASSF7Q02833 373 aa20.14■□□□□ 0.81
UPF3A-208ENST00000484246 API5Q9BZZ5 524 aaKnown RBP20.14■□□□□ 0.81
UPF3A-208ENST00000484246 ATP6V0A2Q9Y487 856 aa20.14■□□□□ 0.81
UPF3A-208ENST00000484246 LMNB1P20700 586 aa20.13■□□□□ 0.81
UPF3A-208ENST00000484246 SLC4A10Q6U841 1118 aa20.13■□□□□ 0.81
UPF3A-208ENST00000484246 PRELPP51888 382 aa20.12■□□□□ 0.81
UPF3A-208ENST00000484246 FKBP4Q02790 459 aaKnown RBP eCLIP20.12■□□□□ 0.81
UPF3A-208ENST00000484246 C9orf131Q5VYM1 1079 aa20.12■□□□□ 0.81
UPF3A-208ENST00000484246 TTLL11Q8NHH1 800 aa20.12■□□□□ 0.81
UPF3A-208ENST00000484246 JARID2Q92833 1246 aaPredicted RBP20.12■□□□□ 0.81
UPF3A-208ENST00000484246 PSMD1Q99460 953 aa20.12■□□□□ 0.81
UPF3A-208ENST00000484246 NOB1Q9ULX3 412 aaKnown RBP20.12■□□□□ 0.81
UPF3A-208ENST00000484246 FER1L6Q2WGJ9 1857 aa20.11■□□□□ 0.81
UPF3A-208ENST00000484246 SP8Q8IXZ3 490 aa20.11■□□□□ 0.81
UPF3A-208ENST00000484246 ZNF219Q9P2Y4 722 aaPredicted RBP20.11■□□□□ 0.81
UPF3A-208ENST00000484246 LRRC37AA6NMS7 1700 aa20.1■□□□□ 0.81
UPF3A-208ENST00000484246 CSF1RP07333 972 aa20.1■□□□□ 0.81
UPF3A-208ENST00000484246 CCT4P50991 539 aaKnown RBP20.1■□□□□ 0.81
UPF3A-208ENST00000484246 OLFM4Q6UX06 510 aa20.1■□□□□ 0.81
UPF3A-208ENST00000484246 CELF1Q92879 486 aaKnown RBP20.1■□□□□ 0.81
UPF3A-208ENST00000484246 IPO8O15397 1037 aaKnown RBP20.09■□□□□ 0.81
UPF3A-208ENST00000484246 RNF181Q9P0P0 153 aa20.09■□□□□ 0.81
UPF3A-208ENST00000484246 COL4A1P02462 1669 aa20.08■□□□□ 0.81
UPF3A-208ENST00000484246 RPS8P62241 208 aaKnown RBP20.08■□□□□ 0.81
UPF3A-208ENST00000484246 RTFDC1Q9BY42 306 aaPredicted RBP20.08■□□□□ 0.81
UPF3A-208ENST00000484246 C9orf78Q9NZ63 289 aaPredicted RBP20.08■□□□□ 0.81
UPF3A-208ENST00000484246 BCAR3O75815 825 aa20.07■□□□□ 0.8
UPF3A-208ENST00000484246 FOXO4P98177 505 aa20.07■□□□□ 0.8
UPF3A-208ENST00000484246 ATF7IPQ6VMQ6 1270 aa20.07■□□□□ 0.8
UPF3A-208ENST00000484246 CDC5LQ99459 802 aaKnown RBP20.07■□□□□ 0.8
UPF3A-208ENST00000484246 TMX4Q9H1E5 349 aaPredicted RBP20.07■□□□□ 0.8
UPF3A-208ENST00000484246 GREM2Q9H772 168 aa20.07■□□□□ 0.8
UPF3A-208ENST00000484246 SEC31BQ9NQW1 1179 aa20.07■□□□□ 0.8
UPF3A-208ENST00000484246 TRIM27P14373 513 aa20.06■□□□□ 0.8
UPF3A-208ENST00000484246 CACNA1SQ13698 1873 aa20.06■□□□□ 0.8
UPF3A-208ENST00000484246 INTS3Q68E01 1043 aaKnown RBP20.06■□□□□ 0.8
UPF3A-208ENST00000484246 SLC51AQ86UW1 340 aa20.06■□□□□ 0.8
UPF3A-208ENST00000484246 VPS33BQ9H267 617 aa20.06■□□□□ 0.8
UPF3A-208ENST00000484246 NBPF7P0C2Y1 421 aaPredicted RBP20.05■□□□□ 0.8
UPF3A-208ENST00000484246 FAM161AQ3B820 660 aa20.05■□□□□ 0.8
UPF3A-208ENST00000484246 RABL6Q3YEC7 729 aaPredicted RBP20.05■□□□□ 0.8
UPF3A-208ENST00000484246 USP44Q9H0E7 712 aa20.05■□□□□ 0.8
UPF3A-208ENST00000484246 DUOX1Q9NRD9 1551 aa20.04■□□□□ 0.8
UPF3A-208ENST00000484246 IARSP41252 1262 aaKnown RBP20.04■□□□□ 0.8
UPF3A-208ENST00000484246 ANKRD18AQ8IVF6 992 aa20.04■□□□□ 0.8
UPF3A-208ENST00000484246 SUPT20HQ8NEM7 779 aa20.04■□□□□ 0.8
UPF3A-208ENST00000484246 KAZALD1Q96I82 304 aa20.04■□□□□ 0.8
UPF3A-208ENST00000484246 LTBP1Q14766 1721 aa20.03■□□□□ 0.8
UPF3A-208ENST00000484246 C1QTNF8P60827 252 aa20.03■□□□□ 0.8
UPF3A-208ENST00000484246 EPHA10Q5JZY3 1008 aa20.03■□□□□ 0.8
UPF3A-208ENST00000484246 ZKSCAN2Q63HK3 967 aa20.03■□□□□ 0.8
UPF3A-208ENST00000484246 SUCLG2Q96I99 432 aa20.03■□□□□ 0.8
UPF3A-208ENST00000484246 ZNF277Q9NRM2 450 aaPredicted RBP20.03■□□□□ 0.8
UPF3A-208ENST00000484246 PODXL2Q9NZ53 605 aa20.03■□□□□ 0.8
UPF3A-208ENST00000484246 SBF1O95248 1867 aa20.03■□□□□ 0.8
UPF3A-208ENST00000484246 ITGA6P23229 1130 aa20.02■□□□□ 0.8
UPF3A-208ENST00000484246 DPP8Q6V1X1 898 aaPredicted RBP20.02■□□□□ 0.8
UPF3A-208ENST00000484246 MPNDQ8N594 471 aa20.02■□□□□ 0.8
UPF3A-208ENST00000484246 CCDC85AQ96PX6 553 aaPredicted RBP20.02■□□□□ 0.8
UPF3A-208ENST00000484246 BSDC1Q9NW68 430 aaPredicted RBP20.02■□□□□ 0.8
UPF3A-208ENST00000484246 LMBR1LQ6UX01 489 aa20.01■□□□□ 0.79
UPF3A-208ENST00000484246 MYH3P11055 1940 aa20.01■□□□□ 0.79
UPF3A-208ENST00000484246 TIAM2Q8IVF5 1701 aa20.01■□□□□ 0.79
UPF3A-208ENST00000484246 FRAT1Q92837 279 aaPredicted RBP20■□□□□ 0.79
UPF3A-208ENST00000484246 ANKRD18BA2A2Z9 1011 aa19.99■□□□□ 0.79
UPF3A-208ENST00000484246 IGHMBP2P38935 993 aaKnown RBP19.99■□□□□ 0.79
UPF3A-208ENST00000484246 GPSM2P81274 684 aa19.99■□□□□ 0.79
UPF3A-208ENST00000484246 KIAA2012Q0VF49 1180 aa19.99■□□□□ 0.79
UPF3A-208ENST00000484246 IFIT5Q13325 482 aaKnown RBP19.99■□□□□ 0.79
UPF3A-208ENST00000484246 ANKRD44Q8N8A2 993 aa19.99■□□□□ 0.79
UPF3A-208ENST00000484246 BICC1Q9H694 974 aaKnown RBP19.99■□□□□ 0.79
UPF3A-208ENST00000484246 COL4A5P29400 1685 aa19.98■□□□□ 0.79
UPF3A-208ENST00000484246 FZD9O00144 591 aa19.98■□□□□ 0.79
UPF3A-208ENST00000484246 HDAC5Q9UQL6 1122 aa19.98■□□□□ 0.79
UPF3A-208ENST00000484246 XDHP47989 1333 aa19.98■□□□□ 0.79
UPF3A-208ENST00000484246 KDM2BQ8NHM5 1336 aa19.98■□□□□ 0.79
UPF3A-208ENST00000484246 GLTPD2A6NH11 291 aa19.97■□□□□ 0.79
UPF3A-208ENST00000484246 UBTFL1P0CB47 393 aaPredicted RBP19.97■□□□□ 0.79
UPF3A-208ENST00000484246 RCAN3Q9UKA8 241 aa19.97■□□□□ 0.79
UPF3A-208ENST00000484246 MINPP1Q9UNW1 487 aa19.97■□□□□ 0.79
UPF3A-208ENST00000484246 NSFL1CQ9UNZ2 370 aaKnown RBP19.97■□□□□ 0.79
UPF3A-208ENST00000484246 TNNQ9UQP3 1299 aa19.97■□□□□ 0.79
UPF3A-208ENST00000484246 DICER1Q9UPY3 1922 aaKnown RBP19.96■□□□□ 0.79
UPF3A-208ENST00000484246 PPIP5K2O43314 1243 aa19.96■□□□□ 0.79
Retrieved 100 of 20,778 RNA–protein pairs in 18.9 ms