RNA–Protein interactions for RNA: ENST00000483009.1

CCDC28B-205, Transcript of coiled-coil domain containing 28B, humanhuman

TSL 5

Gene CCDC28B, Length 615 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC28B-205ENST00000483009 SP8Q8IXZ3 490 aa20.02■□□□□ 0.8
CCDC28B-205ENST00000483009 RRAGCQ9HB90 399 aa20.02■□□□□ 0.8
CCDC28B-205ENST00000483009 LINS1Q8NG48 757 aa20.01■□□□□ 0.79
CCDC28B-205ENST00000483009 CELF1Q92879 486 aaKnown RBP20.01■□□□□ 0.79
CCDC28B-205ENST00000483009 CDCA7LQ96GN5 454 aa20.01■□□□□ 0.79
CCDC28B-205ENST00000483009 TIAM2Q8IVF5 1701 aa20.01■□□□□ 0.79
CCDC28B-205ENST00000483009 DDX60Q8IY21 1712 aaKnown RBP20■□□□□ 0.79
CCDC28B-205ENST00000483009 CCDC152Q4G0S7 254 aa20■□□□□ 0.79
CCDC28B-205ENST00000483009 LAMB2P55268 1798 aa20■□□□□ 0.79
CCDC28B-205ENST00000483009 TOMM70O94826 608 aa19.99■□□□□ 0.79
CCDC28B-205ENST00000483009 GCKRQ14397 625 aa19.99■□□□□ 0.79
CCDC28B-205ENST00000483009 C16orf71Q8IYS4 520 aaPredicted RBP19.99■□□□□ 0.79
CCDC28B-205ENST00000483009 JDP2Q8WYK2 163 aa19.99■□□□□ 0.79
CCDC28B-205ENST00000483009 F6X3S4 739 aa19.98■□□□□ 0.79
CCDC28B-205ENST00000483009 H7C1W4 665 aa19.98■□□□□ 0.79
CCDC28B-205ENST00000483009 VEGFAP15692 232 aaPredicted RBP19.98■□□□□ 0.79
CCDC28B-205ENST00000483009 DPP8Q6V1X1 898 aaPredicted RBP19.98■□□□□ 0.79
CCDC28B-205ENST00000483009 TRMT2AQ8IZ69 625 aaKnown RBP19.98■□□□□ 0.79
CCDC28B-205ENST00000483009 LARGE2Q8N3Y3 721 aa19.98■□□□□ 0.79
CCDC28B-205ENST00000483009 MPNDQ8N594 471 aa19.98■□□□□ 0.79
CCDC28B-205ENST00000483009 SUPT20HQ8NEM7 779 aa19.98■□□□□ 0.79
CCDC28B-205ENST00000483009 RTFDC1Q9BY42 306 aaPredicted RBP19.98■□□□□ 0.79
CCDC28B-205ENST00000483009 CCDC88AQ3V6T2 1871 aa19.98■□□□□ 0.79
CCDC28B-205ENST00000483009 DICER1Q9UPY3 1922 aaKnown RBP19.98■□□□□ 0.79
CCDC28B-205ENST00000483009 FZD9O00144 591 aa19.97■□□□□ 0.79
CCDC28B-205ENST00000483009 DDNO94850 711 aaPredicted RBP19.97■□□□□ 0.79
CCDC28B-205ENST00000483009 CTSWP56202 376 aa19.97■□□□□ 0.79
CCDC28B-205ENST00000483009 RPS8P62241 208 aaKnown RBP19.97■□□□□ 0.79
CCDC28B-205ENST00000483009 UBE3BQ7Z3V4 1068 aa19.97■□□□□ 0.79
CCDC28B-205ENST00000483009 SEC31BQ9NQW1 1179 aa19.97■□□□□ 0.79
CCDC28B-205ENST00000483009 CACNA1FO60840 1977 aa19.97■□□□□ 0.79
CCDC28B-205ENST00000483009 ZNF541Q9H0D2 1346 aa19.97■□□□□ 0.79
CCDC28B-205ENST00000483009 PPIP5K2O43314 1243 aa19.96■□□□□ 0.79
CCDC28B-205ENST00000483009 BEND3Q5T5X7 828 aa19.96■□□□□ 0.79
CCDC28B-205ENST00000483009 MRPL50Q8N5N7 158 aaKnown RBP19.96■□□□□ 0.79
CCDC28B-205ENST00000483009 RBM46Q8TBY0 533 aaKnown RBP19.96■□□□□ 0.79
CCDC28B-205ENST00000483009 CCDC85AQ96PX6 553 aaPredicted RBP19.96■□□□□ 0.79
CCDC28B-205ENST00000483009 VPS33BQ9H267 617 aa19.96■□□□□ 0.79
CCDC28B-205ENST00000483009 POTECB2RU33 542 aa19.95■□□□□ 0.78
CCDC28B-205ENST00000483009 CASP7P55210 303 aa19.95■□□□□ 0.78
CCDC28B-205ENST00000483009 PLA2G12BQ9BX93 195 aa19.95■□□□□ 0.78
CCDC28B-205ENST00000483009 AOC3Q16853 763 aa19.94■□□□□ 0.78
CCDC28B-205ENST00000483009 NIM1KQ8IY84 436 aa19.94■□□□□ 0.78
CCDC28B-205ENST00000483009 TTLL11Q8NHH1 800 aa19.94■□□□□ 0.78
CCDC28B-205ENST00000483009 SSH1Q8WYL5 1049 aa19.94■□□□□ 0.78
CCDC28B-205ENST00000483009 L3MBTL3Q96JM7 780 aaPredicted RBP19.94■□□□□ 0.78
CCDC28B-205ENST00000483009 CT47B1P0C2W7 299 aaPredicted RBP19.93■□□□□ 0.78
CCDC28B-205ENST00000483009 EIF6P56537 245 aaKnown RBP19.93■□□□□ 0.78
CCDC28B-205ENST00000483009 COL4A5P29400 1685 aa19.93■□□□□ 0.78
CCDC28B-205ENST00000483009 WDR90Q96KV7 1748 aa19.93■□□□□ 0.78
CCDC28B-205ENST00000483009 COL4A1P02462 1669 aa19.92■□□□□ 0.78
CCDC28B-205ENST00000483009 KIAA2012Q0VF49 1180 aa19.92■□□□□ 0.78
CCDC28B-205ENST00000483009 ALDH1L2Q3SY69 923 aa19.92■□□□□ 0.78
CCDC28B-205ENST00000483009 ANKRD18AQ8IVF6 992 aa19.92■□□□□ 0.78
CCDC28B-205ENST00000483009 CDC5LQ99459 802 aaKnown RBP19.92■□□□□ 0.78
CCDC28B-205ENST00000483009 NSFL1CQ9UNZ2 370 aaKnown RBP19.92■□□□□ 0.78
CCDC28B-205ENST00000483009 RTL9Q8NET4 1388 aa19.92■□□□□ 0.78
CCDC28B-205ENST00000483009 IQCA1LA6NCM1 817 aa19.91■□□□□ 0.78
CCDC28B-205ENST00000483009 ALDH1L1O75891 902 aa19.91■□□□□ 0.78
CCDC28B-205ENST00000483009 GPSM2P81274 684 aa19.91■□□□□ 0.78
CCDC28B-205ENST00000483009 SLC4A10Q6U841 1118 aa19.91■□□□□ 0.78
CCDC28B-205ENST00000483009 BCL2L13Q9BXK5 485 aa19.91■□□□□ 0.78
CCDC28B-205ENST00000483009 GREM2Q9H772 168 aa19.91■□□□□ 0.78
CCDC28B-205ENST00000483009 PTPRCP08575 1304 aa19.91■□□□□ 0.78
CCDC28B-205ENST00000483009 HSPA6P17066 643 aa19.9■□□□□ 0.78
CCDC28B-205ENST00000483009 FSTL1Q12841 308 aa19.9■□□□□ 0.78
CCDC28B-205ENST00000483009 GPC2Q8N158 579 aa19.9■□□□□ 0.78
CCDC28B-205ENST00000483009 SMC1BQ8NDV3 1235 aa19.9■□□□□ 0.78
CCDC28B-205ENST00000483009 SRCIN1Q9C0H9 1055 aa19.9■□□□□ 0.78
CCDC28B-205ENST00000483009 LRRC37AA6NMS7 1700 aa19.9■□□□□ 0.78
CCDC28B-205ENST00000483009 TAF1P21675 1872 aa19.9■□□□□ 0.78
CCDC28B-205ENST00000483009 DUOX1Q9NRD9 1551 aa19.89■□□□□ 0.77
CCDC28B-205ENST00000483009 SMC4Q9NTJ3 1288 aa19.89■□□□□ 0.77
CCDC28B-205ENST00000483009 PODXL2Q9NZ53 605 aa19.89■□□□□ 0.77
CCDC28B-205ENST00000483009 ZNRF3Q9ULT6 936 aa19.89■□□□□ 0.77
CCDC28B-205ENST00000483009 C6orf229H3BNL8 230 aa19.88■□□□□ 0.77
CCDC28B-205ENST00000483009 GRM8O00222 908 aa19.88■□□□□ 0.77
CCDC28B-205ENST00000483009 CSF1RP07333 972 aa19.88■□□□□ 0.77
CCDC28B-205ENST00000483009 HNRNPUQ00839 825 aaKnown RBP eCLIP19.88■□□□□ 0.77
CCDC28B-205ENST00000483009 POLLQ9UGP5 575 aa19.88■□□□□ 0.77
CCDC28B-205ENST00000483009 GJA3Q9Y6H8 435 aa19.88■□□□□ 0.77
CCDC28B-205ENST00000483009 WASHC4Q2M389 1173 aa19.87■□□□□ 0.77
CCDC28B-205ENST00000483009 FAM161AQ3B820 660 aa19.87■□□□□ 0.77
CCDC28B-205ENST00000483009 TBC1D16Q8TBP0 767 aa19.87■□□□□ 0.77
CCDC28B-205ENST00000483009 EYA3Q99504 573 aa19.87■□□□□ 0.77
CCDC28B-205ENST00000483009 TAF1DQ9H5J8 278 aaPredicted RBP19.87■□□□□ 0.77
CCDC28B-205ENST00000483009 BSDC1Q9NW68 430 aaPredicted RBP19.87■□□□□ 0.77
CCDC28B-205ENST00000483009 C9orf78Q9NZ63 289 aaPredicted RBP19.87■□□□□ 0.77
CCDC28B-205ENST00000483009 ANKIB1Q9P2G1 1089 aa19.87■□□□□ 0.77
CCDC28B-205ENST00000483009 HACL1Q9UJ83 578 aa19.87■□□□□ 0.77
CCDC28B-205ENST00000483009 UFL1O94874 794 aa19.86■□□□□ 0.77
CCDC28B-205ENST00000483009 ITGA6P23229 1130 aa19.86■□□□□ 0.77
CCDC28B-205ENST00000483009 GGA1Q9UJY5 639 aa19.86■□□□□ 0.77
CCDC28B-205ENST00000483009 XDHP47989 1333 aa19.85■□□□□ 0.77
CCDC28B-205ENST00000483009 IGHMBP2P38935 993 aaKnown RBP19.85■□□□□ 0.77
CCDC28B-205ENST00000483009 CXCL9Q07325 125 aa19.85■□□□□ 0.77
CCDC28B-205ENST00000483009 RIMBP2O15034 1052 aa19.84■□□□□ 0.77
CCDC28B-205ENST00000483009 BRPF1P55201 1214 aaPredicted RBP19.84■□□□□ 0.77
CCDC28B-205ENST00000483009 FOXO4P98177 505 aa19.84■□□□□ 0.77
CCDC28B-205ENST00000483009 CIAPIN1Q6FI81 312 aa19.84■□□□□ 0.77
Retrieved 100 of 20,778 RNA–protein pairs in 13.6 ms