RNA–Protein interactions for RNA: ENST00000482056.2

C9orf3-218, Transcript of chromosome 9 open reading frame 3, humanhuman

TSL 1 (best)

Gene C9orf3, Length 1,951 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
C9orf3-218ENST00000482056 ATF3P18847 181 aa18.25■□□□□ 0.51
C9orf3-218ENST00000482056 RABL6Q3YEC7 729 aaPredicted RBP18.25■□□□□ 0.51
C9orf3-218ENST00000482056 USPL1Q5W0Q7 1092 aa18.25■□□□□ 0.51
C9orf3-218ENST00000482056 USP25Q9UHP3 1055 aa18.25■□□□□ 0.51
C9orf3-218ENST00000482056 U3KPZ7 1027 aaPredicted RBP18.25■□□□□ 0.51
C9orf3-218ENST00000482056 RFX5P48382 616 aaPredicted RBP18.24■□□□□ 0.51
C9orf3-218ENST00000482056 PTPN12Q05209 780 aaKnown RBP18.24■□□□□ 0.51
C9orf3-218ENST00000482056 GLIPR1L2Q4G1C9 344 aa18.24■□□□□ 0.51
C9orf3-218ENST00000482056 SCAND2PQ9GZW5 306 aaPredicted RBP18.24■□□□□ 0.51
C9orf3-218ENST00000482056 LAMB4A4D0S4 1761 aa18.24■□□□□ 0.51
C9orf3-218ENST00000482056 COL18A1P39060 1754 aa18.24■□□□□ 0.51
C9orf3-218ENST00000482056 ADCY5O95622 1261 aa18.24■□□□□ 0.51
C9orf3-218ENST00000482056 CCDC192P0DO97 292 aa18.24■□□□□ 0.51
C9orf3-218ENST00000482056 TFCP2Q12800 502 aa18.24■□□□□ 0.51
C9orf3-218ENST00000482056 UBE3BQ7Z3V4 1068 aa18.24■□□□□ 0.51
C9orf3-218ENST00000482056 ZNF589Q86UQ0 364 aaPredicted RBP18.24■□□□□ 0.51
C9orf3-218ENST00000482056 DBNLQ9UJU6 430 aaKnown RBP18.24■□□□□ 0.51
C9orf3-218ENST00000482056 USP16Q9Y5T5 823 aa18.24■□□□□ 0.51
C9orf3-218ENST00000482056 IGF2BP2Q9Y6M1 599 aaKnown RBP eCLIP18.24■□□□□ 0.51
C9orf3-218ENST00000482056 PKD1L3Q7Z443 1732 aa18.24■□□□□ 0.51
C9orf3-218ENST00000482056 CABP4P57796 275 aa18.23■□□□□ 0.51
C9orf3-218ENST00000482056 LRP10Q7Z4F1 713 aa18.23■□□□□ 0.51
C9orf3-218ENST00000482056 PLBD2Q8NHP8 589 aa18.23■□□□□ 0.51
C9orf3-218ENST00000482056 A0A087WZG4 1122 aa18.22■□□□□ 0.51
C9orf3-218ENST00000482056 GOLGA6L4A6NEF3 574 aa18.22■□□□□ 0.51
C9orf3-218ENST00000482056 KDM4AO75164 1064 aa18.22■□□□□ 0.51
C9orf3-218ENST00000482056 TOB2Q14106 344 aaPredicted RBP18.22■□□□□ 0.51
C9orf3-218ENST00000482056 GIMAP6Q6P9H5 292 aa18.22■□□□□ 0.51
C9orf3-218ENST00000482056 FUCA2Q9BTY2 467 aa18.22■□□□□ 0.51
C9orf3-218ENST00000482056 CDC37L1Q7L3B6 337 aa18.22■□□□□ 0.51
C9orf3-218ENST00000482056 TICAM2Q86XR7 235 aa18.22■□□□□ 0.51
C9orf3-218ENST00000482056 NEK1Q96PY6 1258 aa18.22■□□□□ 0.51
C9orf3-218ENST00000482056 HAUS7Q99871 368 aa18.22■□□□□ 0.51
C9orf3-218ENST00000482056 MCMDC2Q4G0Z9 681 aa18.21■□□□□ 0.51
C9orf3-218ENST00000482056 DNAJC2Q99543 621 aaKnown RBP18.21■□□□□ 0.51
C9orf3-218ENST00000482056 DCCP43146 1447 aa18.21■□□□□ 0.51
C9orf3-218ENST00000482056 TPM3P06753 285 aa18.21■□□□□ 0.5
C9orf3-218ENST00000482056 SASS6Q6UVJ0 657 aa18.21■□□□□ 0.5
C9orf3-218ENST00000482056 UBE2Q2Q8WVN8 375 aa18.21■□□□□ 0.5
C9orf3-218ENST00000482056 NUP62CLQ9H1M0 184 aa18.21■□□□□ 0.5
C9orf3-218ENST00000482056 PARP4Q9UKK3 1724 aaKnown RBP18.2■□□□□ 0.5
C9orf3-218ENST00000482056 MAP3K11Q16584 847 aa18.2■□□□□ 0.5
C9orf3-218ENST00000482056 TTC6Q86TZ1 520 aa18.2■□□□□ 0.5
C9orf3-218ENST00000482056 FERMT3Q86UX7 667 aa18.2■□□□□ 0.5
C9orf3-218ENST00000482056 TCEANC2Q96MN5 208 aa18.2■□□□□ 0.5
C9orf3-218ENST00000482056 CYP27B1O15528 508 aa18.19■□□□□ 0.5
C9orf3-218ENST00000482056 HMGB1P09429 215 aaKnown RBP18.19■□□□□ 0.5
C9orf3-218ENST00000482056 HSP90B1P14625 803 aaKnown RBP18.19■□□□□ 0.5
C9orf3-218ENST00000482056 GTF3C6Q969F1 213 aa18.19■□□□□ 0.5
C9orf3-218ENST00000482056 EDC3Q96F86 508 aaKnown RBP18.19■□□□□ 0.5
C9orf3-218ENST00000482056 SPATA32Q96LK8 384 aa18.19■□□□□ 0.5
C9orf3-218ENST00000482056 ATP5J2-PTCD1G3V325 749 aa18.19■□□□□ 0.5
C9orf3-218ENST00000482056 PTCD1O75127 700 aaKnown RBP18.19■□□□□ 0.5
C9orf3-218ENST00000482056 STK3Q13188 491 aa18.19■□□□□ 0.5
C9orf3-218ENST00000482056 JARID2Q92833 1246 aaPredicted RBP18.19■□□□□ 0.5
C9orf3-218ENST00000482056 DBNDD2Q9BQY9 259 aa18.19■□□□□ 0.5
C9orf3-218ENST00000482056 ZNF609O15014 1411 aa18.18■□□□□ 0.5
C9orf3-218ENST00000482056 TNS3Q68CZ2 1445 aa18.18■□□□□ 0.5
C9orf3-218ENST00000482056 SH3TC1Q8TE82 1336 aa18.18■□□□□ 0.5
C9orf3-218ENST00000482056 GOLGA6L6A8MZA4 724 aa18.18■□□□□ 0.5
C9orf3-218ENST00000482056 DDX19AQ9NUU7 478 aaKnown RBP18.18■□□□□ 0.5
C9orf3-218ENST00000482056 UQCRHLA0A096LP55 91 aa18.17■□□□□ 0.5
C9orf3-218ENST00000482056 UQCRHP07919 91 aa18.17■□□□□ 0.5
C9orf3-218ENST00000482056 PIP4K2AP48426 406 aaPredicted RBP18.17■□□□□ 0.5
C9orf3-218ENST00000482056 FGD1P98174 961 aa18.17■□□□□ 0.5
C9orf3-218ENST00000482056 LMBR1LQ6UX01 489 aa18.17■□□□□ 0.5
C9orf3-218ENST00000482056 KBTBD3Q8NAB2 608 aa18.17■□□□□ 0.5
C9orf3-218ENST00000482056 PIBF1Q8WXW3 757 aa18.17■□□□□ 0.5
C9orf3-218ENST00000482056 GPR108Q9NPR9 543 aa18.17■□□□□ 0.5
C9orf3-218ENST00000482056 TAF6LQ9Y6J9 622 aa18.17■□□□□ 0.5
C9orf3-218ENST00000482056 PALLDQ8WX93 1383 aa18.17■□□□□ 0.5
C9orf3-218ENST00000482056 CASP7P55210 303 aa18.17■□□□□ 0.5
C9orf3-218ENST00000482056 PLCB2Q00722 1185 aa18.17■□□□□ 0.5
C9orf3-218ENST00000482056 Q6ZUG5 572 aa18.17■□□□□ 0.5
C9orf3-218ENST00000482056 PDCL3Q9H2J4 239 aa18.17■□□□□ 0.5
C9orf3-218ENST00000482056 HELLSQ9NRZ9 838 aa18.17■□□□□ 0.5
C9orf3-218ENST00000482056 CHMP3Q9Y3E7 222 aa18.17■□□□□ 0.5
C9orf3-218ENST00000482056 KIF3AQ9Y496 699 aa18.17■□□□□ 0.5
C9orf3-218ENST00000482056 H3BQV1 296 aa18.16■□□□□ 0.5
C9orf3-218ENST00000482056 DTNBO60941 627 aa18.16■□□□□ 0.5
C9orf3-218ENST00000482056 DNTTIP2Q5QJE6 756 aaKnown RBP18.16■□□□□ 0.5
C9orf3-218ENST00000482056 IFFO2Q5TF58 517 aa18.16■□□□□ 0.5
C9orf3-218ENST00000482056 FAM200AQ8TCP9 573 aa18.16■□□□□ 0.5
C9orf3-218ENST00000482056 TNMDQ9H2S6 317 aa18.16■□□□□ 0.5
C9orf3-218ENST00000482056 ZSCAN16Q9H4T2 348 aaPredicted RBP18.16■□□□□ 0.5
C9orf3-218ENST00000482056 CWC25Q9NXE8 425 aaPredicted RBP18.16■□□□□ 0.5
C9orf3-218ENST00000482056 H7C1W4 665 aa18.15■□□□□ 0.5
C9orf3-218ENST00000482056 DYNC1I1O14576 645 aa18.15■□□□□ 0.5
C9orf3-218ENST00000482056 CHMP4CQ96CF2 233 aa18.15■□□□□ 0.5
C9orf3-218ENST00000482056 MAP7D2Q96T17 732 aa18.15■□□□□ 0.5
C9orf3-218ENST00000482056 LLPHQ9BRT6 129 aaKnown RBP18.15■□□□□ 0.5
C9orf3-218ENST00000482056 IL15P40933 162 aaPredicted RBP18.15■□□□□ 0.5
C9orf3-218ENST00000482056 CHRNA2Q15822 529 aa18.15■□□□□ 0.5
C9orf3-218ENST00000482056 DDX46Q7L014 1031 aaKnown RBP18.15■□□□□ 0.5
C9orf3-218ENST00000482056 LEO1Q8WVC0 666 aaPredicted RBP18.15■□□□□ 0.5
C9orf3-218ENST00000482056 CPDO75976 1380 aa18.14■□□□□ 0.5
C9orf3-218ENST00000482056 CYP21A2P08686 494 aa18.14■□□□□ 0.49
C9orf3-218ENST00000482056 COL9A3Q14050 684 aaPredicted RBP18.14■□□□□ 0.49
C9orf3-218ENST00000482056 CCDC129Q6ZRS4 1044 aa18.14■□□□□ 0.49
C9orf3-218ENST00000482056 PAG1Q9NWQ8 432 aa18.14■□□□□ 0.49
Retrieved 100 of 20,778 RNA–protein pairs in 25.3 ms