RNA–Protein interactions for RNA: ENST00000481999.1

CHD3-211, Transcript of chromodomain helicase DNA binding protein 3, humanhuman

TSL 2

Gene CHD3, Length 2,515 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHD3-211ENST00000481999 RASEFQ8IZ41 740 aa17.49■□□□□ 0.39
CHD3-211ENST00000481999 GPATCH3Q96I76 525 aa17.49■□□□□ 0.39
CHD3-211ENST00000481999 NEUROD6Q96NK8 337 aa17.49■□□□□ 0.39
CHD3-211ENST00000481999 RGS17Q9UGC6 210 aaPredicted RBP17.49■□□□□ 0.39
CHD3-211ENST00000481999 DTNBO60941 627 aa17.49■□□□□ 0.39
CHD3-211ENST00000481999 PKP1Q13835 747 aa17.49■□□□□ 0.39
CHD3-211ENST00000481999 DZIP3Q86Y13 1208 aaKnown RBP17.49■□□□□ 0.39
CHD3-211ENST00000481999 DNAJC2Q99543 621 aaKnown RBP17.49■□□□□ 0.39
CHD3-211ENST00000481999 LSG1Q9H089 658 aaKnown RBP17.49■□□□□ 0.39
CHD3-211ENST00000481999 THRAP3Q9Y2W1 955 aaKnown RBP17.49■□□□□ 0.39
CHD3-211ENST00000481999 NWD2Q9ULI1 1742 aa17.49■□□□□ 0.39
CHD3-211ENST00000481999 LOC102724428A0A0B4J2F2 783 aa17.48■□□□□ 0.39
CHD3-211ENST00000481999 CPA1P15085 419 aa17.48■□□□□ 0.39
CHD3-211ENST00000481999 SIK1P57059 783 aa17.48■□□□□ 0.39
CHD3-211ENST00000481999 UBN2Q6ZU65 1347 aa17.48■□□□□ 0.39
CHD3-211ENST00000481999 A0A0D9SFI3 127 aa17.48■□□□□ 0.39
CHD3-211ENST00000481999 MRE11P49959 708 aa17.48■□□□□ 0.39
CHD3-211ENST00000481999 NLRP10Q86W26 655 aa17.48■□□□□ 0.39
CHD3-211ENST00000481999 CRKLP46109 303 aaKnown RBP17.47■□□□□ 0.39
CHD3-211ENST00000481999 NMIQ13287 307 aaPredicted RBP17.47■□□□□ 0.39
CHD3-211ENST00000481999 INTS5Q6P9B9 1019 aaKnown RBP17.47■□□□□ 0.39
CHD3-211ENST00000481999 COL15A1P39059 1388 aa17.47■□□□□ 0.39
CHD3-211ENST00000481999 EVI5LQ96CN4 794 aa17.47■□□□□ 0.39
CHD3-211ENST00000481999 FSD1Q9BTV5 496 aa17.47■□□□□ 0.39
CHD3-211ENST00000481999 MYH14Q7Z406 1995 aaKnown RBP17.47■□□□□ 0.39
CHD3-211ENST00000481999 RAD50Q92878 1312 aa17.46■□□□□ 0.39
CHD3-211ENST00000481999 DDX46Q7L014 1031 aaKnown RBP17.46■□□□□ 0.39
CHD3-211ENST00000481999 CLEC17AQ6ZS10 378 aa17.46■□□□□ 0.38
CHD3-211ENST00000481999 HSPA4P34932 840 aa17.45■□□□□ 0.38
CHD3-211ENST00000481999 ZNF589Q86UQ0 364 aaPredicted RBP17.45■□□□□ 0.38
CHD3-211ENST00000481999 ZBTB38Q8NAP3 1195 aaPredicted RBP17.45■□□□□ 0.38
CHD3-211ENST00000481999 CDCA7Q9BWT1 371 aaPredicted RBP17.45■□□□□ 0.38
CHD3-211ENST00000481999 GREM2Q9H772 168 aa17.45■□□□□ 0.38
CHD3-211ENST00000481999 PALLDQ8WX93 1383 aa17.45■□□□□ 0.38
CHD3-211ENST00000481999 ST18O60284 1047 aa17.45■□□□□ 0.38
CHD3-211ENST00000481999 ZNF772Q68DY9 489 aaPredicted RBP17.45■□□□□ 0.38
CHD3-211ENST00000481999 BARGINQ6ZT62 677 aa17.45■□□□□ 0.38
CHD3-211ENST00000481999 SEC62Q99442 399 aaKnown RBP17.45■□□□□ 0.38
CHD3-211ENST00000481999 TRMT112Q9UI30 125 aaKnown RBP17.45■□□□□ 0.38
CHD3-211ENST00000481999 GOLGA6L22H0YM25 854 aa17.44■□□□□ 0.38
CHD3-211ENST00000481999 EYA2O00167 538 aa17.44■□□□□ 0.38
CHD3-211ENST00000481999 CCDC57Q2TAC2 916 aa17.44■□□□□ 0.38
CHD3-211ENST00000481999 TAF6LQ9Y6J9 622 aa17.44■□□□□ 0.38
CHD3-211ENST00000481999 PCCAP05165 728 aaPredicted RBP17.44■□□□□ 0.38
CHD3-211ENST00000481999 ADCK5Q3MIX3 580 aa17.44■□□□□ 0.38
CHD3-211ENST00000481999 CHAMP1Q96JM3 812 aa17.44■□□□□ 0.38
CHD3-211ENST00000481999 QTRT2Q9H974 415 aaKnown RBP17.44■□□□□ 0.38
CHD3-211ENST00000481999 SNX14Q9Y5W7 946 aa17.44■□□□□ 0.38
CHD3-211ENST00000481999 NUP98P52948 1817 aa17.43■□□□□ 0.38
CHD3-211ENST00000481999 SSFA2P28290 1259 aa17.43■□□□□ 0.38
CHD3-211ENST00000481999 ATRNO75882 1429 aa17.43■□□□□ 0.38
CHD3-211ENST00000481999 A0A1B0GUL7 405 aa17.43■□□□□ 0.38
CHD3-211ENST00000481999 MCCP23508 829 aa17.43■□□□□ 0.38
CHD3-211ENST00000481999 ADORA1P30542 326 aa17.43■□□□□ 0.38
CHD3-211ENST00000481999 IL6STP40189 918 aaPredicted RBP17.43■□□□□ 0.38
CHD3-211ENST00000481999 EIF5P55010 431 aaKnown RBP17.43■□□□□ 0.38
CHD3-211ENST00000481999 VPS72Q15906 364 aa17.43■□□□□ 0.38
CHD3-211ENST00000481999 PRPF40BQ6NWY9 871 aaKnown RBP17.43■□□□□ 0.38
CHD3-211ENST00000481999 POTEAQ6S8J7 498 aa17.43■□□□□ 0.38
CHD3-211ENST00000481999 CCDC129Q6ZRS4 1044 aa17.43■□□□□ 0.38
CHD3-211ENST00000481999 CCDC87Q9NVE4 849 aa17.43■□□□□ 0.38
CHD3-211ENST00000481999 TRPC5Q9UL62 973 aaPredicted RBP17.43■□□□□ 0.38
CHD3-211ENST00000481999 HCLS1P14317 486 aaPredicted RBP17.42■□□□□ 0.38
CHD3-211ENST00000481999 TRIM28Q13263 835 aaKnown RBP17.42■□□□□ 0.38
CHD3-211ENST00000481999 KIAA1211Q6ZU35 1233 aa17.42■□□□□ 0.38
CHD3-211ENST00000481999 TMX3Q96JJ7 454 aa17.42■□□□□ 0.38
CHD3-211ENST00000481999 IRS4O14654 1257 aaPredicted RBP17.42■□□□□ 0.38
CHD3-211ENST00000481999 NUCB2P80303 420 aa17.42■□□□□ 0.38
CHD3-211ENST00000481999 TTLL11Q8NHH1 800 aa17.42■□□□□ 0.38
CHD3-211ENST00000481999 GRPEL1Q9HAV7 217 aa17.42■□□□□ 0.38
CHD3-211ENST00000481999 ATP5JP18859 108 aa17.41■□□□□ 0.38
CHD3-211ENST00000481999 ITGA6P23229 1130 aa17.41■□□□□ 0.38
CHD3-211ENST00000481999 PI16Q6UXB8 463 aa17.41■□□□□ 0.38
CHD3-211ENST00000481999 PANK2Q9BZ23 570 aa17.41■□□□□ 0.38
CHD3-211ENST00000481999 SNRKQ9NRH2 765 aa17.41■□□□□ 0.38
CHD3-211ENST00000481999 SNAP23O00161 211 aa17.4■□□□□ 0.38
CHD3-211ENST00000481999 GOLIM4O00461 696 aa17.4■□□□□ 0.38
CHD3-211ENST00000481999 IL15P40933 162 aaPredicted RBP17.4■□□□□ 0.38
CHD3-211ENST00000481999 TAF7LQ5H9L4 462 aa17.4■□□□□ 0.38
CHD3-211ENST00000481999 FOXD4L5Q5VV16 416 aaPredicted RBP17.4■□□□□ 0.38
CHD3-211ENST00000481999 SUSD4Q5VX71 490 aa17.4■□□□□ 0.38
CHD3-211ENST00000481999 FOXD4L4Q8WXT5 416 aaPredicted RBP17.4■□□□□ 0.38
CHD3-211ENST00000481999 CWC22Q9HCG8 908 aaKnown RBP17.4■□□□□ 0.38
CHD3-211ENST00000481999 IFIT5Q13325 482 aaKnown RBP17.4■□□□□ 0.38
CHD3-211ENST00000481999 CSF1RP07333 972 aa17.39■□□□□ 0.37
CHD3-211ENST00000481999 LINC00116Q8NCU8 138 aa17.39■□□□□ 0.37
CHD3-211ENST00000481999 GJD4Q96KN9 370 aaPredicted RBP17.39■□□□□ 0.37
CHD3-211ENST00000481999 CCDC171Q6TFL3 1326 aa17.39■□□□□ 0.37
CHD3-211ENST00000481999 BAG4O95429 457 aaKnown RBP17.39■□□□□ 0.37
CHD3-211ENST00000481999 CTSWP56202 376 aa17.39■□□□□ 0.37
CHD3-211ENST00000481999 TCEANC2Q96MN5 208 aa17.39■□□□□ 0.37
CHD3-211ENST00000481999 ZNF609O15014 1411 aa17.38■□□□□ 0.37
CHD3-211ENST00000481999 ANAPC15P60006 121 aa17.38■□□□□ 0.37
CHD3-211ENST00000481999 SCARF1Q14162 830 aa17.38■□□□□ 0.37
CHD3-211ENST00000481999 ZNF34Q8IZ26 560 aa17.38■□□□□ 0.37
CHD3-211ENST00000481999 RBM8AQ9Y5S9 174 aaKnown RBP17.38■□□□□ 0.37
CHD3-211ENST00000481999 CAMTA2O94983 1202 aa17.38■□□□□ 0.37
CHD3-211ENST00000481999 CASTP20810 708 aaKnown RBP17.38■□□□□ 0.37
CHD3-211ENST00000481999 HELBQ8NG08 1087 aaPredicted RBP17.38■□□□□ 0.37
CHD3-211ENST00000481999 RUFY2Q8WXA3 655 aa17.38■□□□□ 0.37
Retrieved 100 of 20,778 RNA–protein pairs in 25.3 ms