RNA–Protein interactions for RNA: ENST00000479965.5

CCDC88B-207, Transcript of coiled-coil domain containing 88B, humanhuman

TSL 2

Gene CCDC88B, Length 3,102 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88B-207ENST00000479965 MLH3Q9UHC1 1453 aa21.98■■□□□ 1.11
CCDC88B-207ENST00000479965 TTC21BQ7Z4L5 1316 aa21.98■■□□□ 1.11
CCDC88B-207ENST00000479965 TEX35Q5T0J7 233 aa21.98■■□□□ 1.11
CCDC88B-207ENST00000479965 DHX40Q8IX18 779 aaKnown RBP21.98■■□□□ 1.11
CCDC88B-207ENST00000479965 CEP57L1Q8IYX8 460 aa21.98■■□□□ 1.11
CCDC88B-207ENST00000479965 PPP1R13BQ96KQ4 1090 aa21.98■■□□□ 1.11
CCDC88B-207ENST00000479965 LRRC2Q9BYS8 371 aa21.98■■□□□ 1.11
CCDC88B-207ENST00000479965 BOLA2Q9H3K6 86 aa21.98■■□□□ 1.11
CCDC88B-207ENST00000479965 MAP3K5Q99683 1374 aa21.98■■□□□ 1.11
CCDC88B-207ENST00000479965 KIF2AO00139 706 aaPredicted RBP21.97■■□□□ 1.11
CCDC88B-207ENST00000479965 PLA2G4AP47712 749 aa21.97■■□□□ 1.11
CCDC88B-207ENST00000479965 ZRSR1Q15695 479 aaKnown RBP21.97■■□□□ 1.11
CCDC88B-207ENST00000479965 ANO10Q9NW15 660 aa21.97■■□□□ 1.11
CCDC88B-207ENST00000479965 DNAI1Q9UI46 699 aa21.97■■□□□ 1.11
CCDC88B-207ENST00000479965 SEC31AO94979 1220 aaKnown RBP21.97■■□□□ 1.11
CCDC88B-207ENST00000479965 TNNT3P45378 269 aaPredicted RBP21.97■■□□□ 1.11
CCDC88B-207ENST00000479965 AMPHP49418 695 aa21.97■■□□□ 1.11
CCDC88B-207ENST00000479965 GOLPH3LQ9H4A5 285 aa21.97■■□□□ 1.11
CCDC88B-207ENST00000479965 A0A0D9SFI3 127 aa21.97■■□□□ 1.11
CCDC88B-207ENST00000479965 RAD51AP2Q09MP3 1159 aa21.97■■□□□ 1.11
CCDC88B-207ENST00000479965 RESTQ13127 1097 aa21.97■■□□□ 1.11
CCDC88B-207ENST00000479965 MNS1Q8NEH6 495 aa21.97■■□□□ 1.11
CCDC88B-207ENST00000479965 ME1P48163 572 aa21.96■■□□□ 1.11
CCDC88B-207ENST00000479965 SDF4Q9BRK5 362 aa21.96■■□□□ 1.11
CCDC88B-207ENST00000479965 UCHL5Q9Y5K5 329 aaKnown RBP eCLIP21.96■■□□□ 1.11
CCDC88B-207ENST00000479965 GNAT3A8MTJ3 354 aa21.96■■□□□ 1.11
CCDC88B-207ENST00000479965 TULP2O00295 520 aa21.96■■□□□ 1.11
CCDC88B-207ENST00000479965 GSDMDP57764 484 aa21.96■■□□□ 1.11
CCDC88B-207ENST00000479965 FAM177A1Q8N128 213 aaPredicted RBP21.96■■□□□ 1.11
CCDC88B-207ENST00000479965 ZBTB9Q96C00 473 aa21.96■■□□□ 1.11
CCDC88B-207ENST00000479965 EYA1Q99502 592 aa21.96■■□□□ 1.11
CCDC88B-207ENST00000479965 ZCCHC17Q9NP64 241 aaKnown RBP21.96■■□□□ 1.11
CCDC88B-207ENST00000479965 ARGLU1Q9NWB6 273 aaPredicted RBP21.96■■□□□ 1.11
CCDC88B-207ENST00000479965 SFPQP23246 707 aaKnown RBP eCLIP21.95■■□□□ 1.11
CCDC88B-207ENST00000479965 ZKSCAN7Q9P0L1 754 aaPredicted RBP21.95■■□□□ 1.11
CCDC88B-207ENST00000479965 GUCY1B3Q02153 619 aa21.95■■□□□ 1.1
CCDC88B-207ENST00000479965 LTV1Q96GA3 475 aaPredicted RBP21.95■■□□□ 1.1
CCDC88B-207ENST00000479965 PRR36Q9H6K5 1346 aa21.95■■□□□ 1.1
CCDC88B-207ENST00000479965 CERS3Q8IU89 383 aa21.95■■□□□ 1.1
CCDC88B-207ENST00000479965 EPC1Q9H2F5 836 aa21.95■■□□□ 1.1
CCDC88B-207ENST00000479965 IFNKQ9P0W0 207 aa21.95■■□□□ 1.1
CCDC88B-207ENST00000479965 URI1O94763 535 aaPredicted RBP21.94■■□□□ 1.1
CCDC88B-207ENST00000479965 KCNB2Q92953 911 aa21.94■■□□□ 1.1
CCDC88B-207ENST00000479965 SIL1Q9H173 461 aa21.94■■□□□ 1.1
CCDC88B-207ENST00000479965 CTAGE5O15320 804 aa21.94■■□□□ 1.1
CCDC88B-207ENST00000479965 FSIP1Q8NA03 581 aa21.94■■□□□ 1.1
CCDC88B-207ENST00000479965 C9orf78Q9NZ63 289 aaPredicted RBP21.94■■□□□ 1.1
CCDC88B-207ENST00000479965 ACEP12821 1306 aa21.93■■□□□ 1.1
CCDC88B-207ENST00000479965 BIN1O00499 593 aa21.93■■□□□ 1.1
CCDC88B-207ENST00000479965 XPO4Q9C0E2 1151 aaKnown RBP21.93■■□□□ 1.1
CCDC88B-207ENST00000479965 NRDCO43847 1150 aa21.93■■□□□ 1.1
CCDC88B-207ENST00000479965 ST5P78524 1137 aa21.93■■□□□ 1.1
CCDC88B-207ENST00000479965 KRBA2Q6ZNG9 492 aa21.93■■□□□ 1.1
CCDC88B-207ENST00000479965 DNAAF4Q8WXU2 420 aa21.93■■□□□ 1.1
CCDC88B-207ENST00000479965 CCDC34Q96HJ3 373 aa21.93■■□□□ 1.1
CCDC88B-207ENST00000479965 ZFP91Q96JP5 570 aaPredicted RBP21.93■■□□□ 1.1
CCDC88B-207ENST00000479965 L2HGDHQ9H9P8 463 aa21.93■■□□□ 1.1
CCDC88B-207ENST00000479965 FEZ2Q9UHY8 353 aaPredicted RBP21.93■■□□□ 1.1
CCDC88B-207ENST00000479965 NBPF11Q86T75 865 aa21.93■■□□□ 1.1
CCDC88B-207ENST00000479965 NAT10Q9H0A0 1025 aaKnown RBP21.93■■□□□ 1.1
CCDC88B-207ENST00000479965 PREX1Q8TCU6 1659 aa21.92■■□□□ 1.1
CCDC88B-207ENST00000479965 ZNF589Q86UQ0 364 aaPredicted RBP21.92■■□□□ 1.1
CCDC88B-207ENST00000479965 IL17REQ8NFR9 667 aa21.92■■□□□ 1.1
CCDC88B-207ENST00000479965 CHPF2Q9P2E5 772 aa21.92■■□□□ 1.1
CCDC88B-207ENST00000479965 TPM4P67936 248 aa21.92■■□□□ 1.1
CCDC88B-207ENST00000479965 GNL2Q13823 731 aaKnown RBP21.92■■□□□ 1.1
CCDC88B-207ENST00000479965 ARMCX5Q6P1M9 558 aa21.91■■□□□ 1.1
CCDC88B-207ENST00000479965 TMX1Q9H3N1 280 aa21.91■■□□□ 1.1
CCDC88B-207ENST00000479965 Q6ZUG5 572 aa21.91■■□□□ 1.1
CCDC88B-207ENST00000479965 CREBRFQ8IUR6 639 aa21.91■■□□□ 1.1
CCDC88B-207ENST00000479965 EDC3Q96F86 508 aaKnown RBP21.91■■□□□ 1.1
CCDC88B-207ENST00000479965 USP28Q96RU2 1077 aa21.91■■□□□ 1.1
CCDC88B-207ENST00000479965 ZSCAN16Q9H4T2 348 aaPredicted RBP21.91■■□□□ 1.1
CCDC88B-207ENST00000479965 TMEM131LA2VDJ0 1609 aa21.9■■□□□ 1.1
CCDC88B-207ENST00000479965 ISM2Q6H9L7 571 aa21.9■■□□□ 1.1
CCDC88B-207ENST00000479965 CARD6Q9BX69 1037 aa21.9■■□□□ 1.1
CCDC88B-207ENST00000479965 ADCY9O60503 1353 aa21.9■■□□□ 1.1
CCDC88B-207ENST00000479965 BEND3Q5T5X7 828 aa21.9■■□□□ 1.1
CCDC88B-207ENST00000479965 SMARCE1Q969G3 411 aa21.9■■□□□ 1.1
CCDC88B-207ENST00000479965 TLR7Q9NYK1 1049 aaKnown RBP21.9■■□□□ 1.1
CCDC88B-207ENST00000479965 FAM193AP78312 1265 aa21.89■■□□□ 1.1
CCDC88B-207ENST00000479965 TNFRSF11AQ9Y6Q6 616 aaPredicted RBP21.89■■□□□ 1.1
CCDC88B-207ENST00000479965 A0A1B0GVL5 298 aa21.89■■□□□ 1.09
CCDC88B-207ENST00000479965 ORC3Q9UBD5 711 aaPredicted RBP21.89■■□□□ 1.09
CCDC88B-207ENST00000479965 DLC1Q96QB1 1528 aa21.89■■□□□ 1.09
CCDC88B-207ENST00000479965 GYS2P54840 703 aa21.89■■□□□ 1.09
CCDC88B-207ENST00000479965 USP42Q9H9J4 1324 aaKnown RBP21.88■■□□□ 1.09
CCDC88B-207ENST00000479965 METP08581 1390 aa21.88■■□□□ 1.09
CCDC88B-207ENST00000479965 HIP1O00291 1037 aa21.88■■□□□ 1.09
CCDC88B-207ENST00000479965 FAM160A1Q05DH4 1040 aa21.88■■□□□ 1.09
CCDC88B-207ENST00000479965 SLC20A2Q08357 652 aa21.88■■□□□ 1.09
CCDC88B-207ENST00000479965 DPCR1Q3MIW9 517 aa21.88■■□□□ 1.09
CCDC88B-207ENST00000479965 CCDC93Q567U6 631 aa21.88■■□□□ 1.09
CCDC88B-207ENST00000479965 C10orf67Q8IYJ2 551 aa21.88■■□□□ 1.09
CCDC88B-207ENST00000479965 NEK1Q96PY6 1258 aa21.88■■□□□ 1.09
CCDC88B-207ENST00000479965 OAS2P29728 719 aaKnown RBP21.88■■□□□ 1.09
CCDC88B-207ENST00000479965 CCT2P78371 535 aaKnown RBP21.88■■□□□ 1.09
CCDC88B-207ENST00000479965 PTPN21Q16825 1174 aa21.88■■□□□ 1.09
CCDC88B-207ENST00000479965 EAF2Q96CJ1 260 aaPredicted RBP21.88■■□□□ 1.09
CCDC88B-207ENST00000479965 TAOK2Q9UL54 1235 aa21.88■■□□□ 1.09
Retrieved 100 of 20,778 RNA–protein pairs in 35.2 ms