RNA–Protein interactions for RNA: ENST00000477836.1

SMARCB1-206, Transcript of SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily b, member 1, humanhuman

TSL 2

Gene SMARCB1, Length 660 nt, Biotype processed transcript, Subcellular localisation Cytosol, Exosome, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMARCB1-206ENST00000477836 EGFRP00533 1210 aa13.06□□□□□ -0.32
SMARCB1-206ENST00000477836 SNRPA1P09661 255 aaKnown RBP13.06□□□□□ -0.32
SMARCB1-206ENST00000477836 RBM26Q5T8P6 1007 aaKnown RBP13.06□□□□□ -0.32
SMARCB1-206ENST00000477836 DPP8Q6V1X1 898 aaPredicted RBP13.06□□□□□ -0.32
SMARCB1-206ENST00000477836 RASAL3Q86YV0 1011 aa13.06□□□□□ -0.32
SMARCB1-206ENST00000477836 GAS2L2Q8NHY3 880 aa13.06□□□□□ -0.32
SMARCB1-206ENST00000477836 RTFDC1Q9BY42 306 aaPredicted RBP13.06□□□□□ -0.32
SMARCB1-206ENST00000477836 YDJCA8MPS7 323 aa13.05□□□□□ -0.32
SMARCB1-206ENST00000477836 DIAPH1O60610 1272 aaKnown RBP13.05□□□□□ -0.32
SMARCB1-206ENST00000477836 KIAA2012Q0VF49 1180 aa13.05□□□□□ -0.32
SMARCB1-206ENST00000477836 C3orf67Q6ZVT6 689 aa13.05□□□□□ -0.32
SMARCB1-206ENST00000477836 NGEFQ8N5V2 710 aa13.05□□□□□ -0.32
SMARCB1-206ENST00000477836 COLQQ9Y215 455 aaPredicted RBP13.05□□□□□ -0.32
SMARCB1-206ENST00000477836 POTEFA5A3E0 1075 aa13.04□□□□□ -0.32
SMARCB1-206ENST00000477836 GPR25O00155 361 aa13.04□□□□□ -0.32
SMARCB1-206ENST00000477836 GPTP24298 496 aa13.04□□□□□ -0.32
SMARCB1-206ENST00000477836 MPNDQ8N594 471 aa13.04□□□□□ -0.32
SMARCB1-206ENST00000477836 CEMIPQ8WUJ3 1361 aa13.04□□□□□ -0.32
SMARCB1-206ENST00000477836 SUSD4Q5VX71 490 aa13.03□□□□□ -0.32
SMARCB1-206ENST00000477836 DPF2Q92785 391 aa13.03□□□□□ -0.32
SMARCB1-206ENST00000477836 NUP98P52948 1817 aa13.03□□□□□ -0.32
SMARCB1-206ENST00000477836 UBN2Q6ZU65 1347 aa13.03□□□□□ -0.32
SMARCB1-206ENST00000477836 PSMD14O00487 310 aa13.02□□□□□ -0.33
SMARCB1-206ENST00000477836 SULF1Q8IWU6 871 aa13.02□□□□□ -0.33
SMARCB1-206ENST00000477836 SLC17A8Q8NDX2 589 aa13.02□□□□□ -0.33
SMARCB1-206ENST00000477836 CDCA5Q96FF9 252 aa13.02□□□□□ -0.33
SMARCB1-206ENST00000477836 NLRP3Q96P20 1036 aa13.02□□□□□ -0.33
SMARCB1-206ENST00000477836 ABCC4O15439 1325 aa13.02□□□□□ -0.33
SMARCB1-206ENST00000477836 ERVV-1B6SEH8 477 aa13.01□□□□□ -0.33
SMARCB1-206ENST00000477836 GGA3Q9NZ52 723 aa13.01□□□□□ -0.33
SMARCB1-206ENST00000477836 KNSTRNQ9Y448 316 aa13.01□□□□□ -0.33
SMARCB1-206ENST00000477836 IBTKQ9P2D0 1353 aaPredicted RBP13.01□□□□□ -0.33
SMARCB1-206ENST00000477836 PAPPA2Q9BXP8 1791 aa13□□□□□ -0.33
SMARCB1-206ENST00000477836 MAP3K15Q6ZN16 1313 aa13□□□□□ -0.33
SMARCB1-206ENST00000477836 U2SURPO15042 1029 aaKnown RBP13□□□□□ -0.33
SMARCB1-206ENST00000477836 FKTNO75072 461 aa13□□□□□ -0.33
SMARCB1-206ENST00000477836 NTSR2O95665 410 aa13□□□□□ -0.33
SMARCB1-206ENST00000477836 KIF4BQ2VIQ3 1234 aa13□□□□□ -0.33
SMARCB1-206ENST00000477836 NOM1Q5C9Z4 860 aaKnown RBP13□□□□□ -0.33
SMARCB1-206ENST00000477836 INTS3Q68E01 1043 aaKnown RBP13□□□□□ -0.33
SMARCB1-206ENST00000477836 KIF6Q6ZMV9 814 aa13□□□□□ -0.33
SMARCB1-206ENST00000477836 SP8Q8IXZ3 490 aa13□□□□□ -0.33
SMARCB1-206ENST00000477836 ASTN2O75129 1339 aaPredicted RBP12.99□□□□□ -0.33
SMARCB1-206ENST00000477836 BBOX1O75936 387 aa12.99□□□□□ -0.33
SMARCB1-206ENST00000477836 TTLL7Q6ZT98 887 aa12.99□□□□□ -0.33
SMARCB1-206ENST00000477836 ZBTB3Q9H5J0 574 aa12.99□□□□□ -0.33
SMARCB1-206ENST00000477836 RANBP2P49792 3224 aaKnown RBP12.98□□□□□ -0.33
SMARCB1-206ENST00000477836 EN2P19622 333 aaPredicted RBP12.98□□□□□ -0.33
SMARCB1-206ENST00000477836 RPS12P25398 132 aaKnown RBP12.98□□□□□ -0.33
SMARCB1-206ENST00000477836 TM4SF4P48230 202 aa12.98□□□□□ -0.33
SMARCB1-206ENST00000477836 MOB2Q70IA6 237 aa12.98□□□□□ -0.33
SMARCB1-206ENST00000477836 PPP1R42Q7Z4L9 355 aa12.98□□□□□ -0.33
SMARCB1-206ENST00000477836 DBNDD1Q9H9R9 158 aa12.98□□□□□ -0.33
SMARCB1-206ENST00000477836 FKBP1BP68106 108 aa12.97□□□□□ -0.33
SMARCB1-206ENST00000477836 MKRN3Q13064 507 aaKnown RBP12.97□□□□□ -0.33
SMARCB1-206ENST00000477836 ZNF34Q8IZ26 560 aa12.97□□□□□ -0.33
SMARCB1-206ENST00000477836 R3HDMLQ9H3Y0 253 aa12.97□□□□□ -0.33
SMARCB1-206ENST00000477836 RRP7AQ9Y3A4 280 aaKnown RBP12.97□□□□□ -0.33
SMARCB1-206ENST00000477836 TRIM17Q9Y577 477 aa12.97□□□□□ -0.33
SMARCB1-206ENST00000477836 RBBP6Q7Z6E9 1792 aaKnown RBP12.97□□□□□ -0.33
SMARCB1-206ENST00000477836 UBE2Q2LH0YL09 131 aa12.96□□□□□ -0.33
SMARCB1-206ENST00000477836 RIMBP2O15034 1052 aa12.96□□□□□ -0.33
SMARCB1-206ENST00000477836 MYL6BP14649 208 aa12.96□□□□□ -0.33
SMARCB1-206ENST00000477836 WASHC4Q2M389 1173 aa12.96□□□□□ -0.33
SMARCB1-206ENST00000477836 ANGEL2Q5VTE6 544 aaKnown RBP12.96□□□□□ -0.33
SMARCB1-206ENST00000477836 MCM10Q7L590 875 aa12.96□□□□□ -0.33
SMARCB1-206ENST00000477836 PHACTR3Q96KR7 559 aa12.96□□□□□ -0.33
SMARCB1-206ENST00000477836 KCNQ5Q9NR82 932 aa12.96□□□□□ -0.33
SMARCB1-206ENST00000477836 DUOX1Q9NRD9 1551 aa12.95□□□□□ -0.34
SMARCB1-206ENST00000477836 LAMB4A4D0S4 1761 aa12.95□□□□□ -0.34
SMARCB1-206ENST00000477836 SREBF2Q12772 1141 aa12.95□□□□□ -0.34
SMARCB1-206ENST00000477836 AMER1Q5JTC6 1135 aaPredicted RBP12.95□□□□□ -0.34
SMARCB1-206ENST00000477836 SLC10A5Q5PT55 438 aa12.95□□□□□ -0.34
SMARCB1-206ENST00000477836 RTF1Q92541 710 aaKnown RBP12.95□□□□□ -0.34
SMARCB1-206ENST00000477836 RTL9Q8NET4 1388 aa12.94□□□□□ -0.34
SMARCB1-206ENST00000477836 ECE2O60344 883 aa12.94□□□□□ -0.34
SMARCB1-206ENST00000477836 GRAPQ13588 217 aa12.94□□□□□ -0.34
SMARCB1-206ENST00000477836 SCARF1Q14162 830 aa12.94□□□□□ -0.34
SMARCB1-206ENST00000477836 PARP10Q53GL7 1025 aa12.94□□□□□ -0.34
SMARCB1-206ENST00000477836 GIGYF2Q6Y7W6 1299 aaKnown RBP12.94□□□□□ -0.34
SMARCB1-206ENST00000477836 DDX46Q7L014 1031 aaKnown RBP12.94□□□□□ -0.34
SMARCB1-206ENST00000477836 OTOP1Q7RTM1 612 aa12.94□□□□□ -0.34
SMARCB1-206ENST00000477836 GRAPLQ8TC17 118 aaPredicted RBP12.94□□□□□ -0.34
SMARCB1-206ENST00000477836 UTP14AQ9BVJ6 771 aaKnown RBP12.94□□□□□ -0.34
SMARCB1-206ENST00000477836 CFHR5Q9BXR6 569 aa12.94□□□□□ -0.34
SMARCB1-206ENST00000477836 SCAF8Q9UPN6 1271 aaKnown RBP12.94□□□□□ -0.34
SMARCB1-206ENST00000477836 TTLL12Q14166 644 aaPredicted RBP12.93□□□□□ -0.34
SMARCB1-206ENST00000477836 DCTN1Q14203 1278 aa12.93□□□□□ -0.34
SMARCB1-206ENST00000477836 DOK7Q18PE1 504 aa12.93□□□□□ -0.34
SMARCB1-206ENST00000477836 OTUD5Q96G74 571 aa12.93□□□□□ -0.34
SMARCB1-206ENST00000477836 LAMB2P55268 1798 aa12.93□□□□□ -0.34
SMARCB1-206ENST00000477836 TRIOBPQ9H2D6 2365 aa12.93□□□□□ -0.34
SMARCB1-206ENST00000477836 TAF1P21675 1872 aa12.93□□□□□ -0.34
SMARCB1-206ENST00000477836 H0YGN5 161 aa12.92□□□□□ -0.34
SMARCB1-206ENST00000477836 C6orf229H3BNL8 230 aa12.92□□□□□ -0.34
SMARCB1-206ENST00000477836 HCLS1P14317 486 aaPredicted RBP12.92□□□□□ -0.34
SMARCB1-206ENST00000477836 PRKAR2BP31323 418 aa12.92□□□□□ -0.34
SMARCB1-206ENST00000477836 PRAMEF18Q5VWM3 479 aa12.92□□□□□ -0.34
SMARCB1-206ENST00000477836 CHRDL2Q6WN34 429 aa12.92□□□□□ -0.34
SMARCB1-206ENST00000477836 MIS18AQ9NYP9 233 aa12.92□□□□□ -0.34
Retrieved 100 of 20,778 RNA–protein pairs in 22.1 ms