RNA–Protein interactions for RNA: ENST00000477152.5

BRCA1-214, Transcript of BRCA1, DNA repair associated, humanhuman

TSL 1 (best)

Gene BRCA1, Length 1,980 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
BRCA1-214ENST00000477152 GNL3Q9BVP2 549 aaKnown RBP eCLIP9.71□□□□□ -0.86
BRCA1-214ENST00000477152 NUDCQ9Y266 331 aa9.71□□□□□ -0.86
BRCA1-214ENST00000477152 MRC1P22897 1456 aa9.7□□□□□ -0.86
BRCA1-214ENST00000477152 NPC1L1Q9UHC9 1359 aa9.7□□□□□ -0.86
BRCA1-214ENST00000477152 SOS1Q07889 1333 aaPredicted RBP9.7□□□□□ -0.86
BRCA1-214ENST00000477152 KIF7Q2M1P5 1343 aa9.7□□□□□ -0.86
BRCA1-214ENST00000477152 POTEB3A0JP26 581 aa9.7□□□□□ -0.86
BRCA1-214ENST00000477152 ARHGAP33O14559 1287 aa9.7□□□□□ -0.86
BRCA1-214ENST00000477152 CLK2P49760 499 aaKnown RBP9.7□□□□□ -0.86
BRCA1-214ENST00000477152 C9orf131Q5VYM1 1079 aa9.7□□□□□ -0.86
BRCA1-214ENST00000477152 USPL1Q5W0Q7 1092 aa9.7□□□□□ -0.86
BRCA1-214ENST00000477152 INTS5Q6P9B9 1019 aaKnown RBP9.7□□□□□ -0.86
BRCA1-214ENST00000477152 POTEBQ6S5H4 581 aa9.7□□□□□ -0.86
BRCA1-214ENST00000477152 DNAJC10Q8IXB1 793 aa9.7□□□□□ -0.86
BRCA1-214ENST00000477152 SRP68Q9UHB9 627 aaKnown RBP9.7□□□□□ -0.86
BRCA1-214ENST00000477152 COL15A1P39059 1388 aa9.7□□□□□ -0.86
BRCA1-214ENST00000477152 GNAT3A8MTJ3 354 aa9.7□□□□□ -0.86
BRCA1-214ENST00000477152 U2SURPO15042 1029 aaKnown RBP9.7□□□□□ -0.86
BRCA1-214ENST00000477152 CYP19A1P11511 503 aaPredicted RBP9.7□□□□□ -0.86
BRCA1-214ENST00000477152 NDUFV2P19404 249 aa9.7□□□□□ -0.86
BRCA1-214ENST00000477152 TM4SF1P30408 202 aa9.7□□□□□ -0.86
BRCA1-214ENST00000477152 FSTL1Q12841 308 aa9.7□□□□□ -0.86
BRCA1-214ENST00000477152 CSPP1Q1MSJ5 1256 aa9.7□□□□□ -0.86
BRCA1-214ENST00000477152 CC2D1BQ5T0F9 858 aaKnown RBP9.7□□□□□ -0.86
BRCA1-214ENST00000477152 H0YIN7 160 aa9.69□□□□□ -0.86
BRCA1-214ENST00000477152 POLRMTO00411 1230 aaKnown RBP9.69□□□□□ -0.86
BRCA1-214ENST00000477152 NPHP1O15259 732 aa9.69□□□□□ -0.86
BRCA1-214ENST00000477152 NEFMP07197 916 aa9.69□□□□□ -0.86
BRCA1-214ENST00000477152 MTHFSDQ2M296 383 aaKnown RBP9.69□□□□□ -0.86
BRCA1-214ENST00000477152 IFFO2Q5TF58 517 aa9.69□□□□□ -0.86
BRCA1-214ENST00000477152 RDH13Q8NBN7 331 aa9.69□□□□□ -0.86
BRCA1-214ENST00000477152 CLUAP1Q96AJ1 413 aa9.69□□□□□ -0.86
BRCA1-214ENST00000477152 LGR6Q9HBX8 967 aa9.69□□□□□ -0.86
BRCA1-214ENST00000477152 RNF181Q9P0P0 153 aa9.69□□□□□ -0.86
BRCA1-214ENST00000477152 TNRC6CQ9HCJ0 1690 aaKnown RBP9.69□□□□□ -0.86
BRCA1-214ENST00000477152 MOXD2PA6NHM9 499 aa9.68□□□□□ -0.86
BRCA1-214ENST00000477152 TTLL6Q8N841 843 aa9.68□□□□□ -0.86
BRCA1-214ENST00000477152 SERPINB2P05120 415 aa9.68□□□□□ -0.86
BRCA1-214ENST00000477152 KCNA3P22001 575 aa9.68□□□□□ -0.86
BRCA1-214ENST00000477152 PDE6BP35913 854 aa9.68□□□□□ -0.86
BRCA1-214ENST00000477152 DDR1Q08345 913 aa9.68□□□□□ -0.86
BRCA1-214ENST00000477152 SLC39A6Q13433 755 aa9.68□□□□□ -0.86
BRCA1-214ENST00000477152 SWT1Q5T5J6 900 aaKnown RBP9.68□□□□□ -0.86
BRCA1-214ENST00000477152 RIC3Q7Z5B4 369 aa9.68□□□□□ -0.86
BRCA1-214ENST00000477152 FAM163AQ96GL9 167 aaPredicted RBP9.68□□□□□ -0.86
BRCA1-214ENST00000477152 FMNL2Q96PY5 1086 aa9.68□□□□□ -0.86
BRCA1-214ENST00000477152 ADAMTS7Q9UKP4 1686 aa9.68□□□□□ -0.86
BRCA1-214ENST00000477152 SLC10A3P09131 477 aa9.67□□□□□ -0.86
BRCA1-214ENST00000477152 CANXP27824 592 aaKnown RBP9.67□□□□□ -0.86
BRCA1-214ENST00000477152 SULF1Q8IWU6 871 aa9.67□□□□□ -0.86
BRCA1-214ENST00000477152 RTF1Q92541 710 aaKnown RBP9.67□□□□□ -0.86
BRCA1-214ENST00000477152 AFDNP55196 1824 aaKnown RBP9.67□□□□□ -0.86
BRCA1-214ENST00000477152 UBR2Q8IWV8 1755 aa9.67□□□□□ -0.86
BRCA1-214ENST00000477152 PER1O15534 1290 aaPredicted RBP9.66□□□□□ -0.86
BRCA1-214ENST00000477152 LMNB1P20700 586 aa9.66□□□□□ -0.86
BRCA1-214ENST00000477152 NFIXQ14938 502 aa9.66□□□□□ -0.86
BRCA1-214ENST00000477152 RABGEF1Q9UJ41 708 aa9.66□□□□□ -0.86
BRCA1-214ENST00000477152 ZBTB1Q9Y2K1 713 aa9.66□□□□□ -0.86
BRCA1-214ENST00000477152 SBF1O95248 1867 aa9.66□□□□□ -0.86
BRCA1-214ENST00000477152 KCPQ6ZWJ8 1503 aa9.66□□□□□ -0.86
BRCA1-214ENST00000477152 DLEC1Q9Y238 1755 aa9.66□□□□□ -0.86
BRCA1-214ENST00000477152 CHRNA5P30532 468 aa9.66□□□□□ -0.86
BRCA1-214ENST00000477152 IL6STP40189 918 aaPredicted RBP9.66□□□□□ -0.86
BRCA1-214ENST00000477152 MCM6Q14566 821 aa9.66□□□□□ -0.86
BRCA1-214ENST00000477152 QPCTQ16769 361 aa9.66□□□□□ -0.86
BRCA1-214ENST00000477152 SOGA3Q5TF21 947 aa9.66□□□□□ -0.86
BRCA1-214ENST00000477152 ZNF790Q6PG37 636 aa9.66□□□□□ -0.86
BRCA1-214ENST00000477152 NUTM1Q86Y26 1132 aa9.66□□□□□ -0.86
BRCA1-214ENST00000477152 C2CD5Q86YS7 1000 aa9.66□□□□□ -0.86
BRCA1-214ENST00000477152 SMC1BQ8NDV3 1235 aa9.66□□□□□ -0.86
BRCA1-214ENST00000477152 HLA-CQ95604 372 aa9.66□□□□□ -0.86
BRCA1-214ENST00000477152 PCDHB15Q9Y5E8 787 aa9.66□□□□□ -0.86
BRCA1-214ENST00000477152 HEG1Q9ULI3 1381 aa9.66□□□□□ -0.86
BRCA1-214ENST00000477152 NRXN2Q9P2S2 1712 aa9.65□□□□□ -0.86
BRCA1-214ENST00000477152 ST5P78524 1137 aa9.65□□□□□ -0.86
BRCA1-214ENST00000477152 FLIIQ13045 1269 aa9.65□□□□□ -0.86
BRCA1-214ENST00000477152 NMRK2Q9NPI5 230 aa9.65□□□□□ -0.86
BRCA1-214ENST00000477152 VPS9D1Q9Y2B5 631 aa9.65□□□□□ -0.86
BRCA1-214ENST00000477152 ZNF652Q9Y2D9 606 aa9.65□□□□□ -0.86
BRCA1-214ENST00000477152 BTBD11A6QL63 1104 aa9.64□□□□□ -0.87
BRCA1-214ENST00000477152 EIF5P55010 431 aaKnown RBP9.64□□□□□ -0.87
BRCA1-214ENST00000477152 SETDB2Q96T68 719 aa9.64□□□□□ -0.87
BRCA1-214ENST00000477152 BRIP1Q9BX63 1249 aa9.64□□□□□ -0.87
BRCA1-214ENST00000477152 ZNF330Q9Y3S2 320 aaPredicted RBP9.64□□□□□ -0.87
BRCA1-214ENST00000477152 CARMIL3Q8ND23 1372 aa9.64□□□□□ -0.87
BRCA1-214ENST00000477152 WDR90Q96KV7 1748 aa9.64□□□□□ -0.87
BRCA1-214ENST00000477152 VEGFAP15692 232 aaPredicted RBP9.64□□□□□ -0.87
BRCA1-214ENST00000477152 RSBN1LQ6PCB5 846 aaPredicted RBP9.64□□□□□ -0.87
BRCA1-214ENST00000477152 BICDL1Q6ZP65 573 aa9.64□□□□□ -0.87
BRCA1-214ENST00000477152 CNKSR1Q969H4 720 aa9.64□□□□□ -0.87
BRCA1-214ENST00000477152 POM121Q96HA1 1249 aa9.64□□□□□ -0.87
BRCA1-214ENST00000477152 C1orf115Q9H7X2 142 aa9.64□□□□□ -0.87
BRCA1-214ENST00000477152 RRAGCQ9HB90 399 aa9.64□□□□□ -0.87
BRCA1-214ENST00000477152 RFC5P40937 340 aa9.63□□□□□ -0.87
BRCA1-214ENST00000477152 ZNF622Q969S3 477 aaKnown RBP eCLIP9.63□□□□□ -0.875e-8■■■□□ 17.3
BRCA1-214ENST00000477152 PNNQ9H307 717 aaKnown RBP9.63□□□□□ -0.87
BRCA1-214ENST00000477152 CCDC88AQ3V6T2 1871 aa9.63□□□□□ -0.87
BRCA1-214ENST00000477152 SIPA1L3O60292 1781 aaPredicted RBP9.63□□□□□ -0.87
BRCA1-214ENST00000477152 GLTPD2A6NH11 291 aa9.63□□□□□ -0.87
BRCA1-214ENST00000477152 HTATSF1O43719 755 aaKnown RBP9.63□□□□□ -0.87
Retrieved 100 of 20,778 RNA–protein pairs in 44.2 ms