RNA–Protein interactions for RNA: ENST00000475235.1

HLA-DOB-208, Transcript of major histocompatibility complex, class II, DO beta, humanhuman

Gene HLA-DOB, Length 1,514 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HLA-DOB-208ENST00000475235 RRAGCQ9HB90 399 aa14.74□□□□□ -0.05
HLA-DOB-208ENST00000475235 BCCIPQ9P287 314 aaKnown RBP eCLIP14.74□□□□□ -0.05
HLA-DOB-208ENST00000475235 BBOX1O75936 387 aa14.73□□□□□ -0.05
HLA-DOB-208ENST00000475235 VEGFAP15692 232 aaPredicted RBP14.73□□□□□ -0.05
HLA-DOB-208ENST00000475235 OLFM4Q6UX06 510 aa14.73□□□□□ -0.05
HLA-DOB-208ENST00000475235 DDX46Q7L014 1031 aaKnown RBP14.73□□□□□ -0.05
HLA-DOB-208ENST00000475235 CCDC191Q8NCU4 936 aa14.73□□□□□ -0.05
HLA-DOB-208ENST00000475235 RBM46Q8TBY0 533 aaKnown RBP14.73□□□□□ -0.05
HLA-DOB-208ENST00000475235 MYD88Q99836 296 aa14.73□□□□□ -0.05
HLA-DOB-208ENST00000475235 ABCC4O15439 1325 aa14.73□□□□□ -0.05
HLA-DOB-208ENST00000475235 ANKRD36CQ5JPF3 1778 aa14.73□□□□□ -0.05
HLA-DOB-208ENST00000475235 FER1L6Q2WGJ9 1857 aa14.72□□□□□ -0.05
HLA-DOB-208ENST00000475235 IARSP41252 1262 aaKnown RBP14.72□□□□□ -0.05
HLA-DOB-208ENST00000475235 KSR2Q6VAB6 950 aa14.72□□□□□ -0.05
HLA-DOB-208ENST00000475235 SYNE4Q8N205 404 aa14.72□□□□□ -0.05
HLA-DOB-208ENST00000475235 ZBTB38Q8NAP3 1195 aaPredicted RBP14.72□□□□□ -0.05
HLA-DOB-208ENST00000475235 FAM89AQ96GI7 184 aa14.72□□□□□ -0.05
HLA-DOB-208ENST00000475235 METTL22Q9BUU2 404 aaPredicted RBP14.72□□□□□ -0.05
HLA-DOB-208ENST00000475235 ZNF277Q9NRM2 450 aaPredicted RBP14.72□□□□□ -0.05
HLA-DOB-208ENST00000475235 ATP6V0A2Q9Y487 856 aa14.72□□□□□ -0.05
HLA-DOB-208ENST00000475235 SNED1Q8TER0 1413 aa14.72□□□□□ -0.05
HLA-DOB-208ENST00000475235 TMC4Q7Z404 712 aa14.71□□□□□ -0.05
HLA-DOB-208ENST00000475235 CWC25Q9NXE8 425 aaPredicted RBP14.71□□□□□ -0.05
HLA-DOB-208ENST00000475235 SBF1O95248 1867 aa14.71□□□□□ -0.05
HLA-DOB-208ENST00000475235 PI4KAP2A4QPH2 592 aa14.71□□□□□ -0.06
HLA-DOB-208ENST00000475235 IRS4O14654 1257 aaPredicted RBP14.71□□□□□ -0.06
HLA-DOB-208ENST00000475235 HSPA6P17066 643 aa14.71□□□□□ -0.06
HLA-DOB-208ENST00000475235 NEXNQ0ZGT2 675 aa14.71□□□□□ -0.06
HLA-DOB-208ENST00000475235 GRAPQ13588 217 aa14.71□□□□□ -0.06
HLA-DOB-208ENST00000475235 SF3B3Q15393 1217 aaKnown RBP14.71□□□□□ -0.06
HLA-DOB-208ENST00000475235 PI4KAP1Q8N8J0 262 aa14.71□□□□□ -0.06
HLA-DOB-208ENST00000475235 GRAPLQ8TC17 118 aaPredicted RBP14.71□□□□□ -0.06
HLA-DOB-208ENST00000475235 MAP3K2Q9Y2U5 619 aa14.71□□□□□ -0.06
HLA-DOB-208ENST00000475235 TIAM2Q8IVF5 1701 aa14.7□□□□□ -0.06
HLA-DOB-208ENST00000475235 TCERG1O14776 1098 aaKnown RBP14.7□□□□□ -0.06
HLA-DOB-208ENST00000475235 VAMP4O75379 141 aa14.7□□□□□ -0.06
HLA-DOB-208ENST00000475235 EXOSC9Q06265 439 aaKnown RBP14.7□□□□□ -0.06
HLA-DOB-208ENST00000475235 FSTL1Q12841 308 aa14.7□□□□□ -0.06
HLA-DOB-208ENST00000475235 SP8Q8IXZ3 490 aa14.7□□□□□ -0.06
HLA-DOB-208ENST00000475235 SUPT20HQ8NEM7 779 aa14.7□□□□□ -0.06
HLA-DOB-208ENST00000475235 JDP2Q8WYK2 163 aa14.7□□□□□ -0.06
HLA-DOB-208ENST00000475235 CCER2I3L3R5 266 aa14.69□□□□□ -0.06
HLA-DOB-208ENST00000475235 PCCAP05165 728 aaPredicted RBP14.69□□□□□ -0.06
HLA-DOB-208ENST00000475235 TMEM132AQ24JP5 1023 aa14.69□□□□□ -0.06
HLA-DOB-208ENST00000475235 RTL5Q5HYW3 569 aaPredicted RBP14.69□□□□□ -0.06
HLA-DOB-208ENST00000475235 ZNF428Q96B54 188 aa14.69□□□□□ -0.06
HLA-DOB-208ENST00000475235 VPS33BQ9H267 617 aa14.69□□□□□ -0.06
HLA-DOB-208ENST00000475235 IQCA1LA6NCM1 817 aa14.68□□□□□ -0.06
HLA-DOB-208ENST00000475235 DDNO94850 711 aaPredicted RBP14.68□□□□□ -0.06
HLA-DOB-208ENST00000475235 FLIIQ13045 1269 aa14.68□□□□□ -0.06
HLA-DOB-208ENST00000475235 ZNF521Q96K83 1311 aa14.67□□□□□ -0.06
HLA-DOB-208ENST00000475235 CACNA1SQ13698 1873 aa14.67□□□□□ -0.06
HLA-DOB-208ENST00000475235 FZD9O00144 591 aa14.67□□□□□ -0.06
HLA-DOB-208ENST00000475235 DPP8Q6V1X1 898 aaPredicted RBP14.67□□□□□ -0.06
HLA-DOB-208ENST00000475235 LARGE2Q8N3Y3 721 aa14.67□□□□□ -0.06
HLA-DOB-208ENST00000475235 SMC1BQ8NDV3 1235 aa14.67□□□□□ -0.06
HLA-DOB-208ENST00000475235 PDE8AO60658 829 aa14.66□□□□□ -0.06
HLA-DOB-208ENST00000475235 FKBP5Q13451 457 aaPredicted RBP14.66□□□□□ -0.06
HLA-DOB-208ENST00000475235 G2E3Q7L622 706 aa14.66□□□□□ -0.06
HLA-DOB-208ENST00000475235 MPNDQ8N594 471 aa14.66□□□□□ -0.06
HLA-DOB-208ENST00000475235 L3MBTL3Q96JM7 780 aaPredicted RBP14.66□□□□□ -0.06
HLA-DOB-208ENST00000475235 RTFDC1Q9BY42 306 aaPredicted RBP14.66□□□□□ -0.06
HLA-DOB-208ENST00000475235 CDHR2Q9BYE9 1310 aa14.66□□□□□ -0.06
HLA-DOB-208ENST00000475235 WDR90Q96KV7 1748 aa14.66□□□□□ -0.06
HLA-DOB-208ENST00000475235 POTECB2RU33 542 aa14.66□□□□□ -0.06
HLA-DOB-208ENST00000475235 IGKV5-2P06315 115 aa14.66□□□□□ -0.06
HLA-DOB-208ENST00000475235 APLP1P51693 650 aa14.66□□□□□ -0.06
HLA-DOB-208ENST00000475235 EIF6P56537 245 aaKnown RBP14.66□□□□□ -0.06
HLA-DOB-208ENST00000475235 CCDC152Q4G0S7 254 aa14.66□□□□□ -0.06
HLA-DOB-208ENST00000475235 ZNF541Q9H0D2 1346 aa14.65□□□□□ -0.06
HLA-DOB-208ENST00000475235 PPIP5K2O43314 1243 aa14.65□□□□□ -0.06
HLA-DOB-208ENST00000475235 NIM1KQ8IY84 436 aa14.65□□□□□ -0.06
HLA-DOB-208ENST00000475235 GPC2Q8N158 579 aa14.65□□□□□ -0.06
HLA-DOB-208ENST00000475235 CELF1Q92879 486 aaKnown RBP14.65□□□□□ -0.06
HLA-DOB-208ENST00000475235 NEURL1BA8MQ27 555 aa14.64□□□□□ -0.07
HLA-DOB-208ENST00000475235 E9PSI1 815 aa14.64□□□□□ -0.07
HLA-DOB-208ENST00000475235 DNAAF4Q8WXU2 420 aa14.64□□□□□ -0.07
HLA-DOB-208ENST00000475235 RPS8P62241 208 aaKnown RBP14.63□□□□□ -0.07
HLA-DOB-208ENST00000475235 CWF19L2Q2TBE0 894 aaKnown RBP14.63□□□□□ -0.07
HLA-DOB-208ENST00000475235 SLC51AQ86UW1 340 aa14.63□□□□□ -0.07
HLA-DOB-208ENST00000475235 LINS1Q8NG48 757 aa14.63□□□□□ -0.07
HLA-DOB-208ENST00000475235 DICER1Q9UPY3 1922 aaKnown RBP14.63□□□□□ -0.07
HLA-DOB-208ENST00000475235 KIAA2012Q0VF49 1180 aa14.62□□□□□ -0.07
HLA-DOB-208ENST00000475235 AOC3Q16853 763 aa14.62□□□□□ -0.07
HLA-DOB-208ENST00000475235 HACL1Q9UJ83 578 aa14.62□□□□□ -0.07
HLA-DOB-208ENST00000475235 DDX60Q8IY21 1712 aaKnown RBP14.62□□□□□ -0.07
HLA-DOB-208ENST00000475235 CTSWP56202 376 aa14.61□□□□□ -0.07
HLA-DOB-208ENST00000475235 GCKRQ14397 625 aa14.61□□□□□ -0.07
HLA-DOB-208ENST00000475235 TAF1DQ9H5J8 278 aaPredicted RBP14.61□□□□□ -0.07
HLA-DOB-208ENST00000475235 ZNRF3Q9ULT6 936 aa14.61□□□□□ -0.07
HLA-DOB-208ENST00000475235 NSFL1CQ9UNZ2 370 aaKnown RBP14.61□□□□□ -0.07
HLA-DOB-208ENST00000475235 H7C1W4 665 aa14.61□□□□□ -0.07
HLA-DOB-208ENST00000475235 PNMA8AQ86V59 439 aaPredicted RBP14.61□□□□□ -0.07
HLA-DOB-208ENST00000475235 JARID2Q92833 1246 aaPredicted RBP14.61□□□□□ -0.07
HLA-DOB-208ENST00000475235 CDC5LQ99459 802 aaKnown RBP14.61□□□□□ -0.07
HLA-DOB-208ENST00000475235 GJA3Q9Y6H8 435 aa14.61□□□□□ -0.07
HLA-DOB-208ENST00000475235 LAMB2P55268 1798 aa14.61□□□□□ -0.07
HLA-DOB-208ENST00000475235 CCDC88AQ3V6T2 1871 aa14.61□□□□□ -0.07
HLA-DOB-208ENST00000475235 LMOD1P29536 600 aaPredicted RBP14.6□□□□□ -0.07
HLA-DOB-208ENST00000475235 CHADLQ6NUI6 762 aa14.6□□□□□ -0.07
Retrieved 100 of 20,778 RNA–protein pairs in 28.9 ms