RNA–Protein interactions for RNA: ENST00000474655.6

SYNE1-222, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 1 (best)

Gene SYNE1, Length 1,798 nt, Biotype nonsense mediated decay, Subcellular localisation Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-222ENST00000474655 ATP6V1AP38606 617 aa14.78□□□□□ -0.04
SYNE1-222ENST00000474655 CRKLP46109 303 aaKnown RBP14.78□□□□□ -0.04
SYNE1-222ENST00000474655 CCDC57Q2TAC2 916 aa14.78□□□□□ -0.04
SYNE1-222ENST00000474655 LRRC24Q50LG9 513 aa14.78□□□□□ -0.04
SYNE1-222ENST00000474655 NGLY1Q96IV0 654 aa14.78□□□□□ -0.04
SYNE1-222ENST00000474655 CWC22Q9HCG8 908 aaKnown RBP14.78□□□□□ -0.04
SYNE1-222ENST00000474655 BCORQ6W2J9 1755 aa14.78□□□□□ -0.04
SYNE1-222ENST00000474655 PALLDQ8WX93 1383 aa14.78□□□□□ -0.04
SYNE1-222ENST00000474655 MED23Q9ULK4 1368 aa14.78□□□□□ -0.04
SYNE1-222ENST00000474655 MCM4P33991 863 aa14.78□□□□□ -0.04
SYNE1-222ENST00000474655 SNX14Q9Y5W7 946 aa14.78□□□□□ -0.04
SYNE1-222ENST00000474655 NMIQ13287 307 aaPredicted RBP14.77□□□□□ -0.05
SYNE1-222ENST00000474655 ITPK1Q13572 414 aa14.77□□□□□ -0.05
SYNE1-222ENST00000474655 FAM98CQ17RN3 349 aaKnown RBP14.77□□□□□ -0.05
SYNE1-222ENST00000474655 CLEC17AQ6ZS10 378 aa14.77□□□□□ -0.05
SYNE1-222ENST00000474655 TTLL11Q8NHH1 800 aa14.77□□□□□ -0.05
SYNE1-222ENST00000474655 MAP4K1Q92918 833 aa14.77□□□□□ -0.05
SYNE1-222ENST00000474655 ZNF594Q96JF6 807 aaPredicted RBP14.77□□□□□ -0.05
SYNE1-222ENST00000474655 AK7Q96M32 723 aa14.77□□□□□ -0.05
SYNE1-222ENST00000474655 C8orf37Q96NL8 207 aa14.77□□□□□ -0.05
SYNE1-222ENST00000474655 FSD1Q9BTV5 496 aa14.77□□□□□ -0.05
SYNE1-222ENST00000474655 LAMB2P55268 1798 aa14.77□□□□□ -0.05
SYNE1-222ENST00000474655 CCDC171Q6TFL3 1326 aa14.76□□□□□ -0.05
SYNE1-222ENST00000474655 UBN2Q6ZU65 1347 aa14.76□□□□□ -0.05
SYNE1-222ENST00000474655 GPTP24298 496 aa14.76□□□□□ -0.05
SYNE1-222ENST00000474655 DEKP35659 375 aaKnown RBP14.76□□□□□ -0.05
SYNE1-222ENST00000474655 PTH1RQ03431 593 aa14.76□□□□□ -0.05
SYNE1-222ENST00000474655 CUL4AQ13619 759 aa14.76□□□□□ -0.05
SYNE1-222ENST00000474655 NECTIN1Q15223 517 aa14.76□□□□□ -0.05
SYNE1-222ENST00000474655 PPIL4Q8WUA2 492 aaKnown RBP eCLIP14.76□□□□□ -0.05
SYNE1-222ENST00000474655 FAM227BQ96M60 508 aa14.76□□□□□ -0.05
SYNE1-222ENST00000474655 PUS3Q9BZE2 481 aaKnown RBP14.76□□□□□ -0.05
SYNE1-222ENST00000474655 TBC1D2BQ9UPU7 963 aa14.76□□□□□ -0.05
SYNE1-222ENST00000474655 LRP5O75197 1615 aa14.76□□□□□ -0.05
SYNE1-222ENST00000474655 CTSWP56202 376 aa14.75□□□□□ -0.05
SYNE1-222ENST00000474655 IFIT5Q13325 482 aaKnown RBP14.75□□□□□ -0.05
SYNE1-222ENST00000474655 RASEFQ8IZ41 740 aa14.75□□□□□ -0.05
SYNE1-222ENST00000474655 TNPO1Q92973 898 aaKnown RBP14.75□□□□□ -0.05
SYNE1-222ENST00000474655 TMX3Q96JJ7 454 aa14.75□□□□□ -0.05
SYNE1-222ENST00000474655 ARXQ96QS3 562 aa14.75□□□□□ -0.05
SYNE1-222ENST00000474655 NHSQ6T4R5 1651 aa14.75□□□□□ -0.05
SYNE1-222ENST00000474655 DDX60Q8IY21 1712 aaKnown RBP14.75□□□□□ -0.05
SYNE1-222ENST00000474655 A0A0D9SFI3 127 aa14.75□□□□□ -0.05
SYNE1-222ENST00000474655 A0A1B0GUL7 405 aa14.75□□□□□ -0.05
SYNE1-222ENST00000474655 IRS4O14654 1257 aaPredicted RBP14.75□□□□□ -0.05
SYNE1-222ENST00000474655 KCNQ2O43526 872 aa14.75□□□□□ -0.05
SYNE1-222ENST00000474655 PDE8AO60658 829 aa14.75□□□□□ -0.05
SYNE1-222ENST00000474655 TIMM10P62072 90 aa14.75□□□□□ -0.05
SYNE1-222ENST00000474655 SYNE4Q8N205 404 aa14.75□□□□□ -0.05
SYNE1-222ENST00000474655 INTS4Q96HW7 963 aaKnown RBP14.75□□□□□ -0.05
SYNE1-222ENST00000474655 TTC14Q96N46 770 aa14.75□□□□□ -0.05
SYNE1-222ENST00000474655 TM6SF1Q9BZW5 370 aa14.75□□□□□ -0.05
SYNE1-222ENST00000474655 CEP126Q9P2H0 1117 aa14.75□□□□□ -0.05
SYNE1-222ENST00000474655 TRMT112Q9UI30 125 aaKnown RBP14.75□□□□□ -0.05
SYNE1-222ENST00000474655 AKAP2Q9Y2D5 859 aa14.75□□□□□ -0.05
SYNE1-222ENST00000474655 CAMTA2O94983 1202 aa14.74□□□□□ -0.05
SYNE1-222ENST00000474655 CYP2E1P05181 493 aaPredicted RBP14.74□□□□□ -0.05
SYNE1-222ENST00000474655 KBTBD3Q8NAB2 608 aa14.74□□□□□ -0.05
SYNE1-222ENST00000474655 RIPOR2Q9Y4F9 1068 aa14.74□□□□□ -0.05
SYNE1-222ENST00000474655 BTAF1O14981 1849 aa14.74□□□□□ -0.05
SYNE1-222ENST00000474655 RGL2O15211 777 aa14.73□□□□□ -0.05
SYNE1-222ENST00000474655 NUCB2P80303 420 aa14.73□□□□□ -0.05
SYNE1-222ENST00000474655 EDC3Q96F86 508 aaKnown RBP14.73□□□□□ -0.05
SYNE1-222ENST00000474655 FOXD4L1Q9NU39 408 aa14.73□□□□□ -0.05
SYNE1-222ENST00000474655 RIC1Q4ADV7 1423 aa14.73□□□□□ -0.05
SYNE1-222ENST00000474655 ITGA6P23229 1130 aa14.73□□□□□ -0.05
SYNE1-222ENST00000474655 GSE1Q14687 1217 aa14.73□□□□□ -0.05
SYNE1-222ENST00000474655 PARP10Q53GL7 1025 aa14.73□□□□□ -0.05
SYNE1-222ENST00000474655 NEUROD6Q96NK8 337 aa14.73□□□□□ -0.05
SYNE1-222ENST00000474655 UPF3BQ9BZI7 483 aaKnown RBP14.73□□□□□ -0.05
SYNE1-222ENST00000474655 GREM2Q9H772 168 aa14.73□□□□□ -0.05
SYNE1-222ENST00000474655 SBF2Q86WG5 1849 aa14.72□□□□□ -0.05
SYNE1-222ENST00000474655 ABCC12Q96J65 1359 aa14.72□□□□□ -0.05
SYNE1-222ENST00000474655 AKAP11Q9UKA4 1901 aa14.72□□□□□ -0.05
SYNE1-222ENST00000474655 DDX11L8A8MPP1 907 aa14.72□□□□□ -0.05
SYNE1-222ENST00000474655 TSGA10IPQ3SY00 556 aa14.72□□□□□ -0.05
SYNE1-222ENST00000474655 USPL1Q5W0Q7 1092 aa14.72□□□□□ -0.05
SYNE1-222ENST00000474655 USP21Q9UK80 565 aa14.72□□□□□ -0.05
SYNE1-222ENST00000474655 RBM8AQ9Y5S9 174 aaKnown RBP14.72□□□□□ -0.05
SYNE1-222ENST00000474655 ARAP2Q8WZ64 1704 aa14.72□□□□□ -0.05
SYNE1-222ENST00000474655 SH3TC1Q8TE82 1336 aa14.72□□□□□ -0.05
SYNE1-222ENST00000474655 MYH7P12883 1935 aa14.72□□□□□ -0.05
SYNE1-222ENST00000474655 ANKRD18BA2A2Z9 1011 aa14.71□□□□□ -0.05
SYNE1-222ENST00000474655 TAF5LO75529 589 aa14.71□□□□□ -0.05
SYNE1-222ENST00000474655 ZGPATQ8N5A5 531 aaKnown RBP14.71□□□□□ -0.05
SYNE1-222ENST00000474655 GBP4Q96PP9 640 aa14.71□□□□□ -0.05
SYNE1-222ENST00000474655 ZSWIM6Q9HCJ5 1215 aa14.71□□□□□ -0.05
SYNE1-222ENST00000474655 PAG1Q9NWQ8 432 aa14.71□□□□□ -0.05
SYNE1-222ENST00000474655 LY75O60449 1722 aa14.71□□□□□ -0.06
SYNE1-222ENST00000474655 TAF7LQ5H9L4 462 aa14.7□□□□□ -0.06
SYNE1-222ENST00000474655 SUSD4Q5VX71 490 aa14.7□□□□□ -0.06
SYNE1-222ENST00000474655 CREB3L3Q68CJ9 461 aa14.7□□□□□ -0.06
SYNE1-222ENST00000474655 PRPF40BQ6NWY9 871 aaKnown RBP14.7□□□□□ -0.06
SYNE1-222ENST00000474655 CLEC4GQ6UXB4 293 aa14.7□□□□□ -0.06
SYNE1-222ENST00000474655 ZNF589Q86UQ0 364 aaPredicted RBP14.7□□□□□ -0.06
SYNE1-222ENST00000474655 VGLL2Q8N8G2 317 aa14.7□□□□□ -0.06
SYNE1-222ENST00000474655 DNAJC2Q99543 621 aaKnown RBP14.7□□□□□ -0.06
SYNE1-222ENST00000474655 SCN7AQ01118 1682 aa14.7□□□□□ -0.06
SYNE1-222ENST00000474655 CNTNAP4Q9C0A0 1308 aa14.7□□□□□ -0.06
SYNE1-222ENST00000474655 RPAP1Q9BWH6 1393 aaPredicted RBP14.7□□□□□ -0.06
Retrieved 100 of 20,778 RNA–protein pairs in 12.1 ms