RNA–Protein interactions for RNA: ENST00000473602.1

SHROOM3-204, Transcript of shroom family member 3, humanhuman

TSL 3

Gene SHROOM3, Length 789 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHROOM3-204ENST00000473602 BEGAINQ9BUH8 593 aa16.73■□□□□ 0.27
SHROOM3-204ENST00000473602 ADAMTSL1Q8N6G6 1762 aa16.73■□□□□ 0.27
SHROOM3-204ENST00000473602 ABCC12Q96J65 1359 aa16.73■□□□□ 0.27
SHROOM3-204ENST00000473602 CACNA1FO60840 1977 aa16.72■□□□□ 0.27
SHROOM3-204ENST00000473602 CCDC85CA6NKD9 419 aa16.72■□□□□ 0.27
SHROOM3-204ENST00000473602 TRAF5O00463 557 aa16.72■□□□□ 0.27
SHROOM3-204ENST00000473602 TCERG1O14776 1098 aaKnown RBP16.72■□□□□ 0.27
SHROOM3-204ENST00000473602 SLC34A2O95436 690 aa16.72■□□□□ 0.27
SHROOM3-204ENST00000473602 ECE1P42892 770 aa16.72■□□□□ 0.27
SHROOM3-204ENST00000473602 C8orf58Q8NAV2 365 aa16.72■□□□□ 0.27
SHROOM3-204ENST00000473602 PLBD2Q8NHP8 589 aa16.72■□□□□ 0.27
SHROOM3-204ENST00000473602 NTSR2O95665 410 aa16.71■□□□□ 0.27
SHROOM3-204ENST00000473602 CCDC30Q5VVM6 783 aa16.71■□□□□ 0.27
SHROOM3-204ENST00000473602 SUSD4Q5VX71 490 aa16.71■□□□□ 0.27
SHROOM3-204ENST00000473602 USP50Q70EL3 339 aaPredicted RBP16.71■□□□□ 0.27
SHROOM3-204ENST00000473602 SLC51AQ86UW1 340 aa16.71■□□□□ 0.27
SHROOM3-204ENST00000473602 TSR2Q969E8 191 aaKnown RBP16.71■□□□□ 0.27
SHROOM3-204ENST00000473602 COL4A5P29400 1685 aa16.7■□□□□ 0.26
SHROOM3-204ENST00000473602 ELL2O00472 640 aaPredicted RBP16.7■□□□□ 0.26
SHROOM3-204ENST00000473602 TCIRG1Q13488 830 aa16.7■□□□□ 0.26
SHROOM3-204ENST00000473602 GRIPAP1Q4V328 841 aa16.7■□□□□ 0.26
SHROOM3-204ENST00000473602 ANKRD13DQ6ZTN6 518 aa16.7■□□□□ 0.26
SHROOM3-204ENST00000473602 NIM1KQ8IY84 436 aa16.69■□□□□ 0.26
SHROOM3-204ENST00000473602 RBM17Q96I25 401 aaKnown RBP16.69■□□□□ 0.26
SHROOM3-204ENST00000473602 UTP14AQ9BVJ6 771 aaKnown RBP16.69■□□□□ 0.26
SHROOM3-204ENST00000473602 TSKSQ9UJT2 592 aa16.69■□□□□ 0.26
SHROOM3-204ENST00000473602 CCER2I3L3R5 266 aa16.68■□□□□ 0.26
SHROOM3-204ENST00000473602 PPEF1O14829 653 aaPredicted RBP16.68■□□□□ 0.26
SHROOM3-204ENST00000473602 AOC2O75106 756 aa16.68■□□□□ 0.26
SHROOM3-204ENST00000473602 GOLGA2Q08379 1002 aa16.68■□□□□ 0.26
SHROOM3-204ENST00000473602 NLRP10Q86W26 655 aa16.68■□□□□ 0.26
SHROOM3-204ENST00000473602 TSPYL6Q8N831 410 aa16.68■□□□□ 0.26
SHROOM3-204ENST00000473602 CRAMP1Q96RY5 1269 aa16.68■□□□□ 0.26
SHROOM3-204ENST00000473602 TLL2Q9Y6L7 1015 aa16.68■□□□□ 0.26
SHROOM3-204ENST00000473602 FANCIQ9NVI1 1328 aa16.68■□□□□ 0.26
SHROOM3-204ENST00000473602 LAMB2P55268 1798 aa16.67■□□□□ 0.26
SHROOM3-204ENST00000473602 PPIP5K2O43314 1243 aa16.67■□□□□ 0.26
SHROOM3-204ENST00000473602 MAP2K2P36507 400 aa16.67■□□□□ 0.26
SHROOM3-204ENST00000473602 MLLT1Q03111 559 aaPredicted RBP16.67■□□□□ 0.26
SHROOM3-204ENST00000473602 TWISTNBQ3B726 338 aaPredicted RBP16.67■□□□□ 0.26
SHROOM3-204ENST00000473602 C3orf67Q6ZVT6 689 aa16.67■□□□□ 0.26
SHROOM3-204ENST00000473602 ADARB2Q9NS39 739 aaKnown RBP16.67■□□□□ 0.26
SHROOM3-204ENST00000473602 SALL2Q9Y467 1007 aaPredicted RBP16.67■□□□□ 0.26
SHROOM3-204ENST00000473602 LTBP1Q14766 1721 aa16.66■□□□□ 0.26
SHROOM3-204ENST00000473602 SLC10A5Q5PT55 438 aa16.66■□□□□ 0.26
SHROOM3-204ENST00000473602 STK31Q9BXU1 1019 aa16.66■□□□□ 0.26
SHROOM3-204ENST00000473602 MYH16Q9H6N6 1097 aa16.66■□□□□ 0.26
SHROOM3-204ENST00000473602 GPRC5DQ9NZD1 345 aa16.66■□□□□ 0.26
SHROOM3-204ENST00000473602 DDX58O95786 925 aaKnown RBP16.65■□□□□ 0.26
SHROOM3-204ENST00000473602 RGS19P49795 217 aa16.65■□□□□ 0.26
SHROOM3-204ENST00000473602 CXCL9Q07325 125 aa16.65■□□□□ 0.26
SHROOM3-204ENST00000473602 AOC3Q16853 763 aa16.65■□□□□ 0.26
SHROOM3-204ENST00000473602 RIC3Q7Z5B4 369 aa16.65■□□□□ 0.26
SHROOM3-204ENST00000473602 SAPCD2Q86UD0 394 aa16.65■□□□□ 0.26
SHROOM3-204ENST00000473602 NLRP3Q96P20 1036 aa16.65■□□□□ 0.26
SHROOM3-204ENST00000473602 ISCA1Q9BUE6 129 aa16.65■□□□□ 0.26
SHROOM3-204ENST00000473602 TMX4Q9H1E5 349 aaPredicted RBP16.65■□□□□ 0.26
SHROOM3-204ENST00000473602 PHAXQ9H814 394 aaKnown RBP16.65■□□□□ 0.26
SHROOM3-204ENST00000473602 SH3TC1Q8TE82 1336 aa16.65■□□□□ 0.26
SHROOM3-204ENST00000473602 DDX60Q8IY21 1712 aaKnown RBP16.65■□□□□ 0.26
SHROOM3-204ENST00000473602 CELF2O95319 508 aaKnown RBP16.64■□□□□ 0.25
SHROOM3-204ENST00000473602 TRIM28Q13263 835 aaKnown RBP16.64■□□□□ 0.25
SHROOM3-204ENST00000473602 TRMT112Q9UI30 125 aaKnown RBP16.64■□□□□ 0.25
SHROOM3-204ENST00000473602 ZNRF3Q9ULT6 936 aa16.64■□□□□ 0.25
SHROOM3-204ENST00000473602 ATP6V0A2Q9Y487 856 aa16.64■□□□□ 0.25
SHROOM3-204ENST00000473602 ZNF521Q96K83 1311 aa16.64■□□□□ 0.25
SHROOM3-204ENST00000473602 GLIS2Q9BZE0 524 aaPredicted RBP16.63■□□□□ 0.25
SHROOM3-204ENST00000473602 VPS33BQ9H267 617 aa16.63■□□□□ 0.25
SHROOM3-204ENST00000473602 GMPSP49915 693 aaPredicted RBP16.62■□□□□ 0.25
SHROOM3-204ENST00000473602 CA12O43570 354 aa16.61■□□□□ 0.25
SHROOM3-204ENST00000473602 SUPT20HQ8NEM7 779 aa16.61■□□□□ 0.25
SHROOM3-204ENST00000473602 MCOLN1Q9GZU1 580 aa16.61■□□□□ 0.25
SHROOM3-204ENST00000473602 ZNF408Q9H9D4 720 aa16.61■□□□□ 0.25
SHROOM3-204ENST00000473602 PGAP2Q9UHJ9 254 aa16.61■□□□□ 0.25
SHROOM3-204ENST00000473602 ATP5J2-PTCD1G3V325 749 aa16.6■□□□□ 0.25
SHROOM3-204ENST00000473602 VAMP4O75379 141 aa16.6■□□□□ 0.25
SHROOM3-204ENST00000473602 HIRAP54198 1017 aaPredicted RBP16.6■□□□□ 0.25
SHROOM3-204ENST00000473602 EXOSC9Q06265 439 aaKnown RBP16.6■□□□□ 0.25
SHROOM3-204ENST00000473602 HHIPL1Q96JK4 782 aa16.6■□□□□ 0.25
SHROOM3-204ENST00000473602 METTL22Q9BUU2 404 aaPredicted RBP16.6■□□□□ 0.25
SHROOM3-204ENST00000473602 BCL2L13Q9BXK5 485 aa16.6■□□□□ 0.25
SHROOM3-204ENST00000473602 RTFDC1Q9BY42 306 aaPredicted RBP16.6■□□□□ 0.25
SHROOM3-204ENST00000473602 SPINK5Q9NQ38 1064 aaPredicted RBP16.6■□□□□ 0.25
SHROOM3-204ENST00000473602 BBOX1O75936 387 aa16.59■□□□□ 0.25
SHROOM3-204ENST00000473602 RAD17O75943 681 aa16.59■□□□□ 0.25
SHROOM3-204ENST00000473602 SLC4A2P04920 1241 aa16.59■□□□□ 0.25
SHROOM3-204ENST00000473602 HSP90B1P14625 803 aaKnown RBP16.59■□□□□ 0.25
SHROOM3-204ENST00000473602 BRPF1P55201 1214 aaPredicted RBP16.59■□□□□ 0.25
SHROOM3-204ENST00000473602 CIAPIN1Q6FI81 312 aa16.59■□□□□ 0.25
SHROOM3-204ENST00000473602 DPP8Q6V1X1 898 aaPredicted RBP16.59■□□□□ 0.25
SHROOM3-204ENST00000473602 KSR2Q6VAB6 950 aa16.59■□□□□ 0.25
SHROOM3-204ENST00000473602 CCDC191Q8NCU4 936 aa16.59■□□□□ 0.25
SHROOM3-204ENST00000473602 ABCC4O15439 1325 aa16.59■□□□□ 0.25
SHROOM3-204ENST00000473602 HCLS1P14317 486 aaPredicted RBP16.58■□□□□ 0.24
SHROOM3-204ENST00000473602 SP8Q8IXZ3 490 aa16.58■□□□□ 0.24
SHROOM3-204ENST00000473602 MPNDQ8N594 471 aa16.58■□□□□ 0.24
SHROOM3-204ENST00000473602 ZC3H15Q8WU90 426 aaKnown RBP16.58■□□□□ 0.24
SHROOM3-204ENST00000473602 MYD88Q99836 296 aa16.58■□□□□ 0.24
SHROOM3-204ENST00000473602 THSD7BQ9C0I4 1608 aa16.58■□□□□ 0.24
SHROOM3-204ENST00000473602 PI4KAP2A4QPH2 592 aa16.57■□□□□ 0.24
Retrieved 100 of 20,778 RNA–protein pairs in 13.3 ms