RNA–Protein interactions for RNA: ENST00000473258.1

COL6A3-210, Transcript of collagen type VI alpha 3 chain, humanhuman

TSL 2

Gene COL6A3, Length 5,433 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3-210ENST00000473258 KIF5AQ12840 1032 aa10.23□□□□□ -0.77
COL6A3-210ENST00000473258 PPP1R21Q6ZMI0 780 aa10.23□□□□□ -0.77
COL6A3-210ENST00000473258 ANKRD24Q8TF21 1146 aa10.23□□□□□ -0.77
COL6A3-210ENST00000473258 RASSF2P50749 326 aa10.22□□□□□ -0.77
COL6A3-210ENST00000473258 GIMAP6Q6P9H5 292 aa10.22□□□□□ -0.77
COL6A3-210ENST00000473258 RAB3IPQ96QF0 476 aaPredicted RBP10.22□□□□□ -0.77
COL6A3-210ENST00000473258 UBAP1Q9NZ09 502 aa10.22□□□□□ -0.77
COL6A3-210ENST00000473258 TUBB2AQ13885 445 aa10.22□□□□□ -0.77
COL6A3-210ENST00000473258 TUBB2BQ9BVA1 445 aa10.22□□□□□ -0.77
COL6A3-210ENST00000473258 WDHD1O75717 1129 aaPredicted RBP10.22□□□□□ -0.77
COL6A3-210ENST00000473258 CLTAP09496 248 aa10.22□□□□□ -0.77
COL6A3-210ENST00000473258 IRX4P78413 519 aa10.22□□□□□ -0.77
COL6A3-210ENST00000473258 TAF7Q15545 349 aaPredicted RBP10.22□□□□□ -0.77
COL6A3-210ENST00000473258 GOLGA6BA6NDN3 693 aa10.22□□□□□ -0.77
COL6A3-210ENST00000473258 KDM4AO75164 1064 aa10.22□□□□□ -0.77
COL6A3-210ENST00000473258 MX1P20591 662 aa10.22□□□□□ -0.77
COL6A3-210ENST00000473258 PHEXP78562 749 aa10.22□□□□□ -0.77
COL6A3-210ENST00000473258 GJC2Q5T442 439 aaPredicted RBP10.22□□□□□ -0.77
COL6A3-210ENST00000473258 ACBD5Q5T8D3 534 aaPredicted RBP10.22□□□□□ -0.77
COL6A3-210ENST00000473258 FAM210AQ96ND0 272 aa10.22□□□□□ -0.77
COL6A3-210ENST00000473258 GDPD2Q9HCC8 539 aa10.22□□□□□ -0.77
COL6A3-210ENST00000473258 GNL3LQ9NVN8 582 aaKnown RBP10.22□□□□□ -0.77
COL6A3-210ENST00000473258 WDR3Q9UNX4 943 aaKnown RBP eCLIP10.22□□□□□ -0.77
COL6A3-210ENST00000473258 HIP1O00291 1037 aa10.21□□□□□ -0.77
COL6A3-210ENST00000473258 TERF2Q15554 542 aa10.21□□□□□ -0.77
COL6A3-210ENST00000473258 ERCC6LQ2NKX8 1250 aa10.21□□□□□ -0.77
COL6A3-210ENST00000473258 TLDC2A0PJX2 215 aa10.21□□□□□ -0.77
COL6A3-210ENST00000473258 STK3Q13188 491 aa10.21□□□□□ -0.77
COL6A3-210ENST00000473258 TDRD12Q587J7 1177 aaKnown RBP10.21□□□□□ -0.77
COL6A3-210ENST00000473258 SENP3Q9H4L4 574 aaPredicted RBP10.21□□□□□ -0.77
COL6A3-210ENST00000473258 RMI1Q9H9A7 625 aa10.21□□□□□ -0.77
COL6A3-210ENST00000473258 STK38LQ9Y2H1 464 aa10.21□□□□□ -0.77
COL6A3-210ENST00000473258 SERPINI2O75830 405 aa10.21□□□□□ -0.78
COL6A3-210ENST00000473258 HDGFL2Q7Z4V5 671 aaPredicted RBP10.21□□□□□ -0.78
COL6A3-210ENST00000473258 ZNF711Q9Y462 761 aa10.21□□□□□ -0.78
COL6A3-210ENST00000473258 E7EVH7 732 aa10.21□□□□□ -0.78
COL6A3-210ENST00000473258 SYT1P21579 422 aa10.21□□□□□ -0.78
COL6A3-210ENST00000473258 RAD51AP2Q09MP3 1159 aa10.21□□□□□ -0.78
COL6A3-210ENST00000473258 RPAP2Q8IXW5 612 aaPredicted RBP10.21□□□□□ -0.78
COL6A3-210ENST00000473258 L3MBTL2Q969R5 705 aa10.21□□□□□ -0.78
COL6A3-210ENST00000473258 CARD6Q9BX69 1037 aa10.21□□□□□ -0.78
COL6A3-210ENST00000473258 EIF2AQ9BY44 585 aaKnown RBP10.21□□□□□ -0.78
COL6A3-210ENST00000473258 Q9H521 79 aa10.21□□□□□ -0.78
COL6A3-210ENST00000473258 NBPF9Q3BBW0 867 aa10.2□□□□□ -0.78
COL6A3-210ENST00000473258 VPS52Q8N1B4 723 aa10.2□□□□□ -0.78
COL6A3-210ENST00000473258 IWS1Q96ST2 819 aa10.2□□□□□ -0.78
COL6A3-210ENST00000473258 ZBTB22O15209 634 aa10.2□□□□□ -0.78
COL6A3-210ENST00000473258 CCT5P48643 541 aa10.2□□□□□ -0.78
COL6A3-210ENST00000473258 CHMP4BP1P59074 171 aa10.2□□□□□ -0.78
COL6A3-210ENST00000473258 GNGT1P63211 74 aa10.2□□□□□ -0.78
COL6A3-210ENST00000473258 WDR75Q8IWA0 830 aaKnown RBP10.2□□□□□ -0.78
COL6A3-210ENST00000473258 TMEM57Q8N5G2 664 aa10.2□□□□□ -0.78
COL6A3-210ENST00000473258 CDCA7LQ96GN5 454 aa10.2□□□□□ -0.78
COL6A3-210ENST00000473258 SEPT10Q9P0V9 454 aa10.2□□□□□ -0.78
COL6A3-210ENST00000473258 TSC22D4Q9Y3Q8 395 aa10.2□□□□□ -0.78
COL6A3-210ENST00000473258 FHAD1B1AJZ9 1412 aa10.2□□□□□ -0.78
COL6A3-210ENST00000473258 SLC3A2P08195 630 aaKnown RBP10.2□□□□□ -0.78
COL6A3-210ENST00000473258 UBASH3AP57075 661 aa10.2□□□□□ -0.78
COL6A3-210ENST00000473258 GNPTABQ3T906 1256 aa10.2□□□□□ -0.78
COL6A3-210ENST00000473258 CAPRIN2Q6IMN6 1127 aaKnown RBP10.2□□□□□ -0.78
COL6A3-210ENST00000473258 TADA2BQ86TJ2 420 aa10.2□□□□□ -0.78
COL6A3-210ENST00000473258 NKIRAS1Q9NYS0 192 aa10.2□□□□□ -0.78
COL6A3-210ENST00000473258 G3BP1Q13283 466 aaKnown RBP eCLIP10.2□□□□□ -0.78
COL6A3-210ENST00000473258 CFAP157Q5JU67 520 aa10.2□□□□□ -0.78
COL6A3-210ENST00000473258 BICD1Q96G01 975 aa10.2□□□□□ -0.78
COL6A3-210ENST00000473258 KRT18P05783 430 aaKnown RBP10.2□□□□□ -0.78
COL6A3-210ENST00000473258 BRD3Q15059 726 aa10.2□□□□□ -0.78
COL6A3-210ENST00000473258 RUFY4Q6ZNE9 571 aa10.2□□□□□ -0.78
COL6A3-210ENST00000473258 TBC1D32Q96NH3 1257 aa10.2□□□□□ -0.78
COL6A3-210ENST00000473258 KCNK9Q9NPC2 374 aa10.2□□□□□ -0.78
COL6A3-210ENST00000473258 PRPF4BQ13523 1007 aaKnown RBP10.19□□□□□ -0.78
COL6A3-210ENST00000473258 CUL3Q13618 768 aa10.19□□□□□ -0.78
COL6A3-210ENST00000473258 LARP7Q4G0J3 582 aaKnown RBP eCLIP10.19□□□□□ -0.78
COL6A3-210ENST00000473258 ANO6Q4KMQ2 910 aa10.19□□□□□ -0.78
COL6A3-210ENST00000473258 NBPF10Q6P3W6 841 aaKnown RBP10.19□□□□□ -0.78
COL6A3-210ENST00000473258 SLC30A9Q6PML9 568 aa10.19□□□□□ -0.78
COL6A3-210ENST00000473258 SAMD1Q6SPF0 538 aaPredicted RBP10.19□□□□□ -0.78
COL6A3-210ENST00000473258 ZNF280CQ8ND82 737 aa10.19□□□□□ -0.78
COL6A3-210ENST00000473258 DHX57Q6P158 1386 aaKnown RBP10.19□□□□□ -0.78
COL6A3-210ENST00000473258 MAN1A2O60476 641 aa10.19□□□□□ -0.78
COL6A3-210ENST00000473258 CYLC1P35663 651 aaPredicted RBP10.19□□□□□ -0.78
COL6A3-210ENST00000473258 TAF11Q15544 211 aa10.19□□□□□ -0.78
COL6A3-210ENST00000473258 BLOC1S2Q6QNY1 142 aa10.19□□□□□ -0.78
COL6A3-210ENST00000473258 ATP8B1O43520 1251 aa10.19□□□□□ -0.78
COL6A3-210ENST00000473258 BASP1P80723 227 aaKnown RBP10.19□□□□□ -0.78
COL6A3-210ENST00000473258 TCERG1LQ5VWI1 586 aa10.19□□□□□ -0.78
COL6A3-210ENST00000473258 EXOC4Q96A65 974 aa10.19□□□□□ -0.78
COL6A3-210ENST00000473258 RASAL2Q9UJF2 1139 aa10.19□□□□□ -0.78
COL6A3-210ENST00000473258 DAAM1Q9Y4D1 1078 aa10.19□□□□□ -0.78
COL6A3-210ENST00000473258 TROVE2P10155 538 aaKnown RBP eCLIP10.19□□□□□ -0.78
COL6A3-210ENST00000473258 IFI16Q16666 785 aaKnown RBP10.19□□□□□ -0.78
COL6A3-210ENST00000473258 SLC4A8Q2Y0W8 1093 aa10.19□□□□□ -0.78
COL6A3-210ENST00000473258 TEX11Q8IYF3 940 aa10.19□□□□□ -0.78
COL6A3-210ENST00000473258 GPR161Q8N6U8 529 aaKnown RBP10.19□□□□□ -0.78
COL6A3-210ENST00000473258 SYTL4Q96C24 671 aaPredicted RBP10.19□□□□□ -0.78
COL6A3-210ENST00000473258 MED4Q9NPJ6 270 aa10.19□□□□□ -0.78
COL6A3-210ENST00000473258 GUCY2CP25092 1073 aa10.18□□□□□ -0.78
COL6A3-210ENST00000473258 CCDC63Q8NA47 563 aa10.18□□□□□ -0.78
COL6A3-210ENST00000473258 IFT81Q8WYA0 676 aa10.18□□□□□ -0.78
COL6A3-210ENST00000473258 PFDN4Q9NQP4 134 aa10.18□□□□□ -0.78
Retrieved 100 of 20,778 RNA–protein pairs in 11.7 ms