RNA–Protein interactions for RNA: ENST00000472224.1

CLRN1-205, Transcript of clarin 1, humanhuman

TSL 3

Gene CLRN1, Length 606 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLRN1-205ENST00000472224 RIC3Q7Z5B4 369 aa15.24■□□□□ 0.03
CLRN1-205ENST00000472224 ZNF34Q8IZ26 560 aa15.24■□□□□ 0.03
CLRN1-205ENST00000472224 PLBD2Q8NHP8 589 aa15.24■□□□□ 0.03
CLRN1-205ENST00000472224 IBTKQ9P2D0 1353 aaPredicted RBP15.24■□□□□ 0.03
CLRN1-205ENST00000472224 ZNF541Q9H0D2 1346 aa15.23■□□□□ 0.03
CLRN1-205ENST00000472224 PARP10Q53GL7 1025 aa15.23■□□□□ 0.03
CLRN1-205ENST00000472224 EAPPQ56P03 285 aaPredicted RBP15.23■□□□□ 0.03
CLRN1-205ENST00000472224 PPP1R42Q7Z4L9 355 aa15.23■□□□□ 0.03
CLRN1-205ENST00000472224 LAMB2P55268 1798 aa15.22■□□□□ 0.03
CLRN1-205ENST00000472224 E9PSI1 815 aa15.22■□□□□ 0.03
CLRN1-205ENST00000472224 MAP1SQ66K74 1059 aaPredicted RBP15.22■□□□□ 0.03
CLRN1-205ENST00000472224 UTP14AQ9BVJ6 771 aaKnown RBP15.22■□□□□ 0.03
CLRN1-205ENST00000472224 ATP5J2-PTCD1G3V325 749 aa15.21■□□□□ 0.03
CLRN1-205ENST00000472224 VAMP4O75379 141 aa15.21■□□□□ 0.03
CLRN1-205ENST00000472224 NTSR2O95665 410 aa15.21■□□□□ 0.03
CLRN1-205ENST00000472224 DDX58O95786 925 aaKnown RBP15.21■□□□□ 0.03
CLRN1-205ENST00000472224 TCIRG1Q13488 830 aa15.21■□□□□ 0.03
CLRN1-205ENST00000472224 PRPF40BQ6NWY9 871 aaKnown RBP15.21■□□□□ 0.03
CLRN1-205ENST00000472224 NLRP10Q86W26 655 aa15.21■□□□□ 0.03
CLRN1-205ENST00000472224 CNTROBQ8N137 903 aa15.2■□□□□ 0.02
CLRN1-205ENST00000472224 CDCA7LQ96GN5 454 aa15.2■□□□□ 0.02
CLRN1-205ENST00000472224 MYD88Q99836 296 aa15.2■□□□□ 0.02
CLRN1-205ENST00000472224 TSKSQ9UJT2 592 aa15.2■□□□□ 0.02
CLRN1-205ENST00000472224 PDZRN3Q9UPQ7 1066 aa15.2■□□□□ 0.02
CLRN1-205ENST00000472224 CLEC11AQ9Y240 323 aa15.2■□□□□ 0.02
CLRN1-205ENST00000472224 TRPM7Q96QT4 1865 aa15.2■□□□□ 0.02
CLRN1-205ENST00000472224 DDX60Q8IY21 1712 aaKnown RBP15.2■□□□□ 0.02
CLRN1-205ENST00000472224 SRGNP10124 158 aa15.19■□□□□ 0.02
CLRN1-205ENST00000472224 EPHX2P34913 555 aa15.19■□□□□ 0.02
CLRN1-205ENST00000472224 HNRNPUQ00839 825 aaKnown RBP eCLIP15.19■□□□□ 0.02
CLRN1-205ENST00000472224 G2E3Q7L622 706 aa15.19■□□□□ 0.02
CLRN1-205ENST00000472224 MASTLQ96GX5 879 aa15.19■□□□□ 0.02
CLRN1-205ENST00000472224 TRMT112Q9UI30 125 aaKnown RBP15.19■□□□□ 0.02
CLRN1-205ENST00000472224 HACL1Q9UJ83 578 aa15.19■□□□□ 0.02
CLRN1-205ENST00000472224 ABT1Q9ULW3 272 aaKnown RBP15.19■□□□□ 0.02
CLRN1-205ENST00000472224 MAP3K2Q9Y2U5 619 aa15.19■□□□□ 0.02
CLRN1-205ENST00000472224 RNF123Q5XPI4 1314 aa15.18■□□□□ 0.02
CLRN1-205ENST00000472224 FMR1Q06787 632 aaKnown RBP eCLIP15.18■□□□□ 0.02
CLRN1-205ENST00000472224 SLFN5Q08AF3 891 aa15.18■□□□□ 0.02
CLRN1-205ENST00000472224 FLIIQ13045 1269 aa15.18■□□□□ 0.02
CLRN1-205ENST00000472224 RTL5Q5HYW3 569 aaPredicted RBP15.18■□□□□ 0.02
CLRN1-205ENST00000472224 STYK1Q6J9G0 422 aa15.18■□□□□ 0.02
CLRN1-205ENST00000472224 C7orf43Q8WVR3 580 aa15.18■□□□□ 0.02
CLRN1-205ENST00000472224 CNKSR1Q969H4 720 aa15.18■□□□□ 0.02
CLRN1-205ENST00000472224 CASP8AP2Q9UKL3 1982 aa15.18■□□□□ 0.02
CLRN1-205ENST00000472224 PI4KAP2A4QPH2 592 aa15.17■□□□□ 0.02
CLRN1-205ENST00000472224 HCLS1P14317 486 aaPredicted RBP15.17■□□□□ 0.02
CLRN1-205ENST00000472224 NPR1P16066 1061 aa15.17■□□□□ 0.02
CLRN1-205ENST00000472224 FKBP5Q13451 457 aaPredicted RBP15.17■□□□□ 0.02
CLRN1-205ENST00000472224 PI4KAP1Q8N8J0 262 aa15.17■□□□□ 0.02
CLRN1-205ENST00000472224 RPGRQ92834 1020 aaKnown RBP15.17■□□□□ 0.02
CLRN1-205ENST00000472224 CAPNS2Q96L46 248 aa15.17■□□□□ 0.02
CLRN1-205ENST00000472224 ISCA1Q9BUE6 129 aa15.17■□□□□ 0.02
CLRN1-205ENST00000472224 MCOLN1Q9GZU1 580 aa15.17■□□□□ 0.02
CLRN1-205ENST00000472224 RIC1Q4ADV7 1423 aa15.17■□□□□ 0.02
CLRN1-205ENST00000472224 SH3TC1Q8TE82 1336 aa15.17■□□□□ 0.02
CLRN1-205ENST00000472224 SOGA3Q5TF21 947 aa15.16■□□□□ 0.02
CLRN1-205ENST00000472224 CYP4F22Q6NT55 531 aa15.16■□□□□ 0.02
CLRN1-205ENST00000472224 KSR2Q6VAB6 950 aa15.16■□□□□ 0.02
CLRN1-205ENST00000472224 SYNE4Q8N205 404 aa15.16■□□□□ 0.02
CLRN1-205ENST00000472224 METTL22Q9BUU2 404 aaPredicted RBP15.16■□□□□ 0.02
CLRN1-205ENST00000472224 ZNF277Q9NRM2 450 aaPredicted RBP15.16■□□□□ 0.02
CLRN1-205ENST00000472224 TAF1P21675 1872 aa15.16■□□□□ 0.02
CLRN1-205ENST00000472224 COL4A5P29400 1685 aa15.16■□□□□ 0.02
CLRN1-205ENST00000472224 NEXNQ0ZGT2 675 aa15.15■□□□□ 0.02
CLRN1-205ENST00000472224 OLFM4Q6UX06 510 aa15.15■□□□□ 0.02
CLRN1-205ENST00000472224 C3orf67Q6ZVT6 689 aa15.15■□□□□ 0.02
CLRN1-205ENST00000472224 PNMA8AQ86V59 439 aaPredicted RBP15.15■□□□□ 0.02
CLRN1-205ENST00000472224 FAM89AQ96GI7 184 aa15.15■□□□□ 0.02
CLRN1-205ENST00000472224 NLRP3Q96P20 1036 aa15.15■□□□□ 0.02
CLRN1-205ENST00000472224 GPR101Q96P66 508 aaPredicted RBP15.15■□□□□ 0.02
CLRN1-205ENST00000472224 MYH3P11055 1940 aa15.15■□□□□ 0.02
CLRN1-205ENST00000472224 PDE4DIPQ5VU43 2346 aa15.14■□□□□ 0.01
CLRN1-205ENST00000472224 CWC25Q9NXE8 425 aaPredicted RBP15.14■□□□□ 0.01
CLRN1-205ENST00000472224 KLRG2A4D1S0 409 aaPredicted RBP15.13■□□□□ 0.01
CLRN1-205ENST00000472224 FZD9O00144 591 aa15.13■□□□□ 0.01
CLRN1-205ENST00000472224 AOC2O75106 756 aa15.13■□□□□ 0.01
CLRN1-205ENST00000472224 FKBP4Q02790 459 aaKnown RBP eCLIP15.13■□□□□ 0.01
CLRN1-205ENST00000472224 GRM1Q13255 1194 aa15.13■□□□□ 0.01
CLRN1-205ENST00000472224 CRY2Q49AN0 593 aa15.13■□□□□ 0.01
CLRN1-205ENST00000472224 CCDC93Q567U6 631 aa15.13■□□□□ 0.01
CLRN1-205ENST00000472224 PAXIP1Q6ZW49 1069 aaPredicted RBP15.13■□□□□ 0.01
CLRN1-205ENST00000472224 JARID2Q92833 1246 aaPredicted RBP15.13■□□□□ 0.01
CLRN1-205ENST00000472224 BEGAINQ9BUH8 593 aa15.13■□□□□ 0.01
CLRN1-205ENST00000472224 BCL2L13Q9BXK5 485 aa15.13■□□□□ 0.01
CLRN1-205ENST00000472224 SNED1Q8TER0 1413 aa15.12■□□□□ 0.01
CLRN1-205ENST00000472224 CWF19L2Q2TBE0 894 aaKnown RBP15.12■□□□□ 0.01
CLRN1-205ENST00000472224 CST9Q5W186 159 aa15.12■□□□□ 0.01
CLRN1-205ENST00000472224 CCDC191Q8NCU4 936 aa15.12■□□□□ 0.01
CLRN1-205ENST00000472224 DNAAF4Q8WXU2 420 aa15.12■□□□□ 0.01
CLRN1-205ENST00000472224 RBM17Q96I25 401 aaKnown RBP15.12■□□□□ 0.01
CLRN1-205ENST00000472224 F6X3S4 739 aa15.11■□□□□ 0.01
CLRN1-205ENST00000472224 IRS4O14654 1257 aaPredicted RBP15.11■□□□□ 0.01
CLRN1-205ENST00000472224 ALDH1B1P30837 517 aa15.11■□□□□ 0.01
CLRN1-205ENST00000472224 ECE1P42892 770 aa15.11■□□□□ 0.01
CLRN1-205ENST00000472224 TRIM28Q13263 835 aaKnown RBP15.11■□□□□ 0.01
CLRN1-205ENST00000472224 SLC10A5Q5PT55 438 aa15.11■□□□□ 0.01
CLRN1-205ENST00000472224 GPC2Q8N158 579 aa15.11■□□□□ 0.01
CLRN1-205ENST00000472224 ZBTB38Q8NAP3 1195 aaPredicted RBP15.11■□□□□ 0.01
CLRN1-205ENST00000472224 SPEF2Q9C093 1822 aa15.1■□□□□ 0.01
Retrieved 100 of 20,778 RNA–protein pairs in 28.6 ms