RNA–Protein interactions for RNA: ENST00000472044.1

PTCD3-209, Transcript of pentatricopeptide repeat domain 3, human

TSL 3

Gene PTCD3, Length 293 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
PTCD3-209	ENST00000472044	SPEM2	Q0P670	501 aa		6.55	□□□□□ -1.36
PTCD3-209	ENST00000472044	ORC1	Q13415	861 aa		6.55	□□□□□ -1.36
PTCD3-209	ENST00000472044	ALG1L	Q6GMV1	187 aa		6.55	□□□□□ -1.36
PTCD3-209	ENST00000472044	NPM2	Q86SE8	214 aa	Known RBP	6.55	□□□□□ -1.36
PTCD3-209	ENST00000472044	FBF1	Q8TES7	1133 aa		6.55	□□□□□ -1.36
PTCD3-209	ENST00000472044	PMEPA1	Q969W9	287 aa		6.55	□□□□□ -1.36
PTCD3-209	ENST00000472044	ZFYVE28	Q9HCC9	887 aa		6.55	□□□□□ -1.36
PTCD3-209	ENST00000472044		H3BM21	787 aa		6.54	□□□□□ -1.36
PTCD3-209	ENST00000472044	GPR25	O00155	361 aa		6.54	□□□□□ -1.36
PTCD3-209	ENST00000472044	PRPF40A	O75400	957 aa	Known RBP	6.54	□□□□□ -1.36
PTCD3-209	ENST00000472044	SASH3	O75995	380 aa		6.54	□□□□□ -1.36
PTCD3-209	ENST00000472044	LDHB	P07195	334 aa	Known RBP	6.54	□□□□□ -1.36
PTCD3-209	ENST00000472044	HOXD8	P13378	290 aa	Predicted RBP	6.54	□□□□□ -1.36
PTCD3-209	ENST00000472044	CD33	P20138	364 aa		6.54	□□□□□ -1.36
PTCD3-209	ENST00000472044	CTBS	Q01459	385 aa		6.54	□□□□□ -1.36
PTCD3-209	ENST00000472044	GRIN2C	Q14957	1233 aa		6.54	□□□□□ -1.36
PTCD3-209	ENST00000472044	ZNF787	Q6DD87	383 aa		6.54	□□□□□ -1.36
PTCD3-209	ENST00000472044	SLC30A3	Q99726	388 aa		6.54	□□□□□ -1.36
PTCD3-209	ENST00000472044	CHRD	Q9H2X0	955 aa		6.54	□□□□□ -1.36
PTCD3-209	ENST00000472044	AVEN	Q9NQS1	362 aa	Predicted RBP	6.54	□□□□□ -1.36
PTCD3-209	ENST00000472044	FOXD3	Q9UJU5	478 aa	Predicted RBP	6.54	□□□□□ -1.36
PTCD3-209	ENST00000472044	GTF3C5	Q9Y5Q8	519 aa	Predicted RBP	6.54	□□□□□ -1.36
PTCD3-209	ENST00000472044	PNMA6F	A0A0J9YX94	578 aa		6.53	□□□□□ -1.36
PTCD3-209	ENST00000472044	PHACTR2	O75167	634 aa		6.53	□□□□□ -1.36
PTCD3-209	ENST00000472044	SOX18	P35713	384 aa		6.53	□□□□□ -1.36
PTCD3-209	ENST00000472044	ATP2B2	Q01814	1243 aa		6.53	□□□□□ -1.36
PTCD3-209	ENST00000472044	TAGLN	Q01995	201 aa	Known RBP	6.53	□□□□□ -1.36
PTCD3-209	ENST00000472044	TTC39B	Q5VTQ0	682 aa	Predicted RBP	6.53	□□□□□ -1.36
PTCD3-209	ENST00000472044	OR13H1	Q8NG92	308 aa		6.53	□□□□□ -1.36
PTCD3-209	ENST00000472044	ZNF428	Q96B54	188 aa		6.53	□□□□□ -1.36
PTCD3-209	ENST00000472044	PNMA5	Q96PV4	448 aa		6.53	□□□□□ -1.36
PTCD3-209	ENST00000472044	CNTN3	Q9P232	1028 aa		6.53	□□□□□ -1.36
PTCD3-209	ENST00000472044	ZFAT	Q9P243	1243 aa		6.53	□□□□□ -1.36
PTCD3-209	ENST00000472044	UNCX	A6NJT0	531 aa		6.52	□□□□□ -1.37
PTCD3-209	ENST00000472044	C2CD2L	O14523	706 aa		6.52	□□□□□ -1.37
PTCD3-209	ENST00000472044	MMP20	O60882	483 aa		6.52	□□□□□ -1.37
PTCD3-209	ENST00000472044	RARA	P10276	462 aa		6.52	□□□□□ -1.37
PTCD3-209	ENST00000472044	NFKB1	P19838	968 aa		6.52	□□□□□ -1.37
PTCD3-209	ENST00000472044	VAMP1	P23763	118 aa		6.52	□□□□□ -1.37
PTCD3-209	ENST00000472044	VEGFB	P49765	207 aa		6.52	□□□□□ -1.37
PTCD3-209	ENST00000472044	NEUROD1	Q13562	356 aa		6.52	□□□□□ -1.37
PTCD3-209	ENST00000472044	GAS6	Q14393	721 aa		6.52	□□□□□ -1.37
PTCD3-209	ENST00000472044	GPR161	Q8N6U8	529 aa	Known RBP	6.52	□□□□□ -1.37
PTCD3-209	ENST00000472044	C1orf127	Q8N9H9	656 aa		6.52	□□□□□ -1.37
PTCD3-209	ENST00000472044	TLR7	Q9NYK1	1049 aa	Known RBP	6.52	□□□□□ -1.37
PTCD3-209	ENST00000472044	WWC3	Q9ULE0	1092 aa		6.52	□□□□□ -1.37
PTCD3-209	ENST00000472044	TERT	O14746	1132 aa	Known RBP	6.51	□□□□□ -1.37
PTCD3-209	ENST00000472044	MX2	P20592	715 aa		6.51	□□□□□ -1.37
PTCD3-209	ENST00000472044	RBM25	P49756	843 aa	Known RBP	6.51	□□□□□ -1.37
PTCD3-209	ENST00000472044	ZNF468	Q5VIY5	522 aa	Predicted RBP	6.51	□□□□□ -1.37
PTCD3-209	ENST00000472044	KRT25	Q7Z3Z0	450 aa		6.51	□□□□□ -1.37
PTCD3-209	ENST00000472044	GALNT12	Q8IXK2	581 aa		6.51	□□□□□ -1.37
PTCD3-209	ENST00000472044	BHMT	Q93088	406 aa		6.51	□□□□□ -1.37
PTCD3-209	ENST00000472044	FRMD6	Q96NE9	622 aa		6.51	□□□□□ -1.37
PTCD3-209	ENST00000472044	EREG	O14944	169 aa		6.5	□□□□□ -1.37
PTCD3-209	ENST00000472044	SIN3B	O75182	1162 aa		6.5	□□□□□ -1.37
PTCD3-209	ENST00000472044	KIF4A	O95239	1232 aa		6.5	□□□□□ -1.37
PTCD3-209	ENST00000472044	BMP4	P12644	408 aa		6.5	□□□□□ -1.37
PTCD3-209	ENST00000472044	CES1	P23141	567 aa		6.5	□□□□□ -1.37
PTCD3-209	ENST00000472044	NRL	P54845	237 aa		6.5	□□□□□ -1.37
PTCD3-209	ENST00000472044	DAB2	P98082	770 aa		6.5	□□□□□ -1.37
PTCD3-209	ENST00000472044	NFX1	Q12986	1120 aa	Known RBP	6.5	□□□□□ -1.37
PTCD3-209	ENST00000472044	USPL1	Q5W0Q7	1092 aa		6.5	□□□□□ -1.37
PTCD3-209	ENST00000472044	DHX32	Q7L7V1	743 aa	Known RBP	6.5	□□□□□ -1.37
PTCD3-209	ENST00000472044	TMC4	Q7Z404	712 aa		6.5	□□□□□ -1.37
PTCD3-209	ENST00000472044	TRPM4	Q8TD43	1214 aa		6.5	□□□□□ -1.37
PTCD3-209	ENST00000472044	SLC16A10	Q8TF71	515 aa		6.5	□□□□□ -1.37
PTCD3-209	ENST00000472044	CCDC74A	Q96AQ1	378 aa		6.5	□□□□□ -1.37
PTCD3-209	ENST00000472044	MBIP	Q9NS73	344 aa		6.5	□□□□□ -1.37
PTCD3-209	ENST00000472044	SALL4	Q9UJQ4	1053 aa		6.5	□□□□□ -1.37
PTCD3-209	ENST00000472044	PRR12	Q9ULL5	1215 aa		6.5	□□□□□ -1.37
PTCD3-209	ENST00000472044	PHF20L1	A8MW92	1017 aa		6.49	□□□□□ -1.37
PTCD3-209	ENST00000472044		E9PSI1	815 aa		6.49	□□□□□ -1.37
PTCD3-209	ENST00000472044	PSAP	P07602	524 aa		6.49	□□□□□ -1.37
PTCD3-209	ENST00000472044	ARAF	P10398	606 aa		6.49	□□□□□ -1.37
PTCD3-209	ENST00000472044	ITGAE	P38570	1179 aa		6.49	□□□□□ -1.37
PTCD3-209	ENST00000472044	MAP2K3	P46734	347 aa		6.49	□□□□□ -1.37
PTCD3-209	ENST00000472044	PLAUR	Q03405	335 aa		6.49	□□□□□ -1.37
PTCD3-209	ENST00000472044	MRPL58	Q14197	206 aa	Known RBP	6.49	□□□□□ -1.37
PTCD3-209	ENST00000472044	PCSK7	Q16549	785 aa		6.49	□□□□□ -1.37
PTCD3-209	ENST00000472044	SYT9	Q86SS6	491 aa		6.49	□□□□□ -1.37
PTCD3-209	ENST00000472044	TNFRSF25	Q93038	417 aa		6.49	□□□□□ -1.37
PTCD3-209	ENST00000472044	MRRF	Q96E11	262 aa	Known RBP	6.49	□□□□□ -1.37
PTCD3-209	ENST00000472044	SETDB2	Q96T68	719 aa		6.49	□□□□□ -1.37
PTCD3-209	ENST00000472044	DUSP9	Q99956	384 aa	Known RBP	6.49	□□□□□ -1.37
PTCD3-209	ENST00000472044	BCL11A	Q9H165	835 aa		6.49	□□□□□ -1.37
PTCD3-209	ENST00000472044	KIAA1522	Q9P206	1035 aa	Predicted RBP	6.49	□□□□□ -1.37
PTCD3-209	ENST00000472044	PARP2	Q9UGN5	583 aa		6.49	□□□□□ -1.37
PTCD3-209	ENST00000472044	NSFL1C	Q9UNZ2	370 aa	Known RBP	6.49	□□□□□ -1.37
PTCD3-209	ENST00000472044	GIPC1	O14908	333 aa		6.48	□□□□□ -1.37
PTCD3-209	ENST00000472044	CYP2E1	P05181	493 aa	Predicted RBP	6.48	□□□□□ -1.37
PTCD3-209	ENST00000472044	EDN3	P14138	238 aa		6.48	□□□□□ -1.37
PTCD3-209	ENST00000472044	GNA15	P30679	374 aa		6.48	□□□□□ -1.37
PTCD3-209	ENST00000472044	GPLD1	P80108	840 aa		6.48	□□□□□ -1.37
PTCD3-209	ENST00000472044	XPC	Q01831	940 aa	Predicted RBP	6.48	□□□□□ -1.37
PTCD3-209	ENST00000472044	RAB44	Q7Z6P3	723 aa	Predicted RBP	6.48	□□□□□ -1.37
PTCD3-209	ENST00000472044	MDFI	Q99750	246 aa		6.48	□□□□□ -1.37
PTCD3-209	ENST00000472044	ADARB2-AS1	A8MUL3	147 aa		6.47	□□□□□ -1.37
PTCD3-209	ENST00000472044	HYAL2	Q12891	473 aa		6.47	□□□□□ -1.37
PTCD3-209	ENST00000472044	KIAA0319	Q5VV43	1072 aa		6.47	□□□□□ -1.37

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