RNA–Protein interactions for RNA: ENST00000471455.1

CPSF4-211, Transcript of cleavage and polyadenylation specific factor 4, humanhuman

TSL 5

Gene CPSF4, Length 569 nt, Biotype processed transcript.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF4-211ENST00000471455 PPP2R1AP30153 589 aa12.08□□□□□ -0.48
CPSF4-211ENST00000471455 IARSP41252 1262 aaKnown RBP12.08□□□□□ -0.48
CPSF4-211ENST00000471455 TAF7Q15545 349 aaPredicted RBP12.08□□□□□ -0.48
CPSF4-211ENST00000471455 ZNF277Q9NRM2 450 aaPredicted RBP12.08□□□□□ -0.48
CPSF4-211ENST00000471455 IBTKQ9P2D0 1353 aaPredicted RBP12.07□□□□□ -0.48
CPSF4-211ENST00000471455 PRAMEF22A3QJZ6 481 aa12.07□□□□□ -0.48
CPSF4-211ENST00000471455 POTEMA6NI47 508 aa12.07□□□□□ -0.48
CPSF4-211ENST00000471455 FAM177BA6PVY3 158 aa12.07□□□□□ -0.48
CPSF4-211ENST00000471455 NBPF26B4DH59 902 aa12.07□□□□□ -0.48
CPSF4-211ENST00000471455 ERVV-1B6SEH8 477 aa12.07□□□□□ -0.48
CPSF4-211ENST00000471455 EPHX2P34913 555 aa12.07□□□□□ -0.48
CPSF4-211ENST00000471455 NBPF10Q6P3W6 841 aaKnown RBP12.07□□□□□ -0.48
CPSF4-211ENST00000471455 POTEGQ6S5H5 508 aa12.07□□□□□ -0.48
CPSF4-211ENST00000471455 GPC2Q8N158 579 aa12.07□□□□□ -0.48
CPSF4-211ENST00000471455 NBPF15Q8N660 670 aa12.07□□□□□ -0.48
CPSF4-211ENST00000471455 RPGRQ92834 1020 aaKnown RBP12.07□□□□□ -0.48
CPSF4-211ENST00000471455 PSMD1Q99460 953 aa12.07□□□□□ -0.48
CPSF4-211ENST00000471455 TMX4Q9H1E5 349 aaPredicted RBP12.07□□□□□ -0.48
CPSF4-211ENST00000471455 ZNF541Q9H0D2 1346 aa12.07□□□□□ -0.48
CPSF4-211ENST00000471455 RIC1Q4ADV7 1423 aa12.06□□□□□ -0.48
CPSF4-211ENST00000471455 LMOD1P29536 600 aaPredicted RBP12.06□□□□□ -0.48
CPSF4-211ENST00000471455 CTCFP49711 727 aaPredicted RBP12.06□□□□□ -0.48
CPSF4-211ENST00000471455 EIF6P56537 245 aaKnown RBP12.06□□□□□ -0.48
CPSF4-211ENST00000471455 PNNQ9H307 717 aaKnown RBP12.06□□□□□ -0.48
CPSF4-211ENST00000471455 PRDM10Q9NQV6 1147 aa12.06□□□□□ -0.48
CPSF4-211ENST00000471455 FZD9O00144 591 aa12.05□□□□□ -0.48
CPSF4-211ENST00000471455 DCTN1Q14203 1278 aa12.05□□□□□ -0.48
CPSF4-211ENST00000471455 CRY2Q49AN0 593 aa12.05□□□□□ -0.48
CPSF4-211ENST00000471455 SYNE4Q8N205 404 aa12.05□□□□□ -0.48
CPSF4-211ENST00000471455 CRISPLD2Q9H0B8 497 aa12.05□□□□□ -0.48
CPSF4-211ENST00000471455 ERBB4Q15303 1308 aa12.05□□□□□ -0.48
CPSF4-211ENST00000471455 RNF123Q5XPI4 1314 aa12.05□□□□□ -0.48
CPSF4-211ENST00000471455 MAP3K15Q6ZN16 1313 aa12.05□□□□□ -0.48
CPSF4-211ENST00000471455 PCNTO95613 3336 aa12.04□□□□□ -0.48
CPSF4-211ENST00000471455 HLFQ16534 295 aa12.04□□□□□ -0.48
CPSF4-211ENST00000471455 MAPK8IP3Q9UPT6 1336 aa12.04□□□□□ -0.48
CPSF4-211ENST00000471455 ABCC12Q96J65 1359 aa12.04□□□□□ -0.48
CPSF4-211ENST00000471455 KDM3BQ7LBC6 1761 aa12.03□□□□□ -0.48
CPSF4-211ENST00000471455 ADAMTSL1Q8N6G6 1762 aa12.03□□□□□ -0.48
CPSF4-211ENST00000471455 FOXN1O15353 648 aa12.03□□□□□ -0.48
CPSF4-211ENST00000471455 ITGBL1O95965 494 aaPredicted RBP12.03□□□□□ -0.48
CPSF4-211ENST00000471455 HOXA10P31260 410 aaPredicted RBP12.03□□□□□ -0.48
CPSF4-211ENST00000471455 CNTROBQ8N137 903 aa12.03□□□□□ -0.48
CPSF4-211ENST00000471455 RBM17Q96I25 401 aaKnown RBP12.03□□□□□ -0.48
CPSF4-211ENST00000471455 ABT1Q9ULW3 272 aaKnown RBP12.03□□□□□ -0.48
CPSF4-211ENST00000471455 RASSF10A6NK89 507 aa12.02□□□□□ -0.49
CPSF4-211ENST00000471455 VEGFBP49765 207 aa12.02□□□□□ -0.49
CPSF4-211ENST00000471455 MAP2K1Q02750 393 aaPredicted RBP12.02□□□□□ -0.49
CPSF4-211ENST00000471455 DEFB115Q30KQ5 88 aa12.02□□□□□ -0.49
CPSF4-211ENST00000471455 PARP10Q53GL7 1025 aa12.02□□□□□ -0.49
CPSF4-211ENST00000471455 OLFM4Q6UX06 510 aa12.02□□□□□ -0.49
CPSF4-211ENST00000471455 PPP1R42Q7Z4L9 355 aa12.02□□□□□ -0.49
CPSF4-211ENST00000471455 NUTM1Q86Y26 1132 aa12.02□□□□□ -0.49
CPSF4-211ENST00000471455 LARGE2Q8N3Y3 721 aa12.02□□□□□ -0.49
CPSF4-211ENST00000471455 NGEFQ8N5V2 710 aa12.02□□□□□ -0.49
CPSF4-211ENST00000471455 TMC2Q8TDI7 906 aa12.02□□□□□ -0.49
CPSF4-211ENST00000471455 GPHNQ9NQX3 736 aaPredicted RBP12.02□□□□□ -0.49
CPSF4-211ENST00000471455 RRP7AQ9Y3A4 280 aaKnown RBP12.02□□□□□ -0.49
CPSF4-211ENST00000471455 GJA3Q9Y6H8 435 aa12.02□□□□□ -0.49
CPSF4-211ENST00000471455 SNED1Q8TER0 1413 aa12.02□□□□□ -0.49
CPSF4-211ENST00000471455 PPEF1O14829 653 aaPredicted RBP12.01□□□□□ -0.49
CPSF4-211ENST00000471455 ECE1P42892 770 aa12.01□□□□□ -0.49
CPSF4-211ENST00000471455 NFE2L2Q16236 605 aa12.01□□□□□ -0.49
CPSF4-211ENST00000471455 MAP1SQ66K74 1059 aaPredicted RBP12.01□□□□□ -0.49
CPSF4-211ENST00000471455 NIM1KQ8IY84 436 aa12.01□□□□□ -0.49
CPSF4-211ENST00000471455 CRAMP1Q96RY5 1269 aa12.01□□□□□ -0.49
CPSF4-211ENST00000471455 VPS33BQ9H267 617 aa12.01□□□□□ -0.49
CPSF4-211ENST00000471455 MIS18AQ9NYP9 233 aa12.01□□□□□ -0.49
CPSF4-211ENST00000471455 NUP98P52948 1817 aa12.01□□□□□ -0.49
CPSF4-211ENST00000471455 MYL6BP14649 208 aa12□□□□□ -0.49
CPSF4-211ENST00000471455 GPTP24298 496 aa12□□□□□ -0.49
CPSF4-211ENST00000471455 EIF4A1P60842 406 aaKnown RBP12□□□□□ -0.49
CPSF4-211ENST00000471455 DOK7Q18PE1 504 aa12□□□□□ -0.49
CPSF4-211ENST00000471455 USP50Q70EL3 339 aaPredicted RBP12□□□□□ -0.49
CPSF4-211ENST00000471455 SUPT20HQ8NEM7 779 aa12□□□□□ -0.49
CPSF4-211ENST00000471455 MARVELD3Q96A59 401 aa12□□□□□ -0.49
CPSF4-211ENST00000471455 BEGAINQ9BUH8 593 aa12□□□□□ -0.49
CPSF4-211ENST00000471455 ZBTB3Q9H5J0 574 aa12□□□□□ -0.49
CPSF4-211ENST00000471455 WBP1LQ9NX94 342 aa12□□□□□ -0.49
CPSF4-211ENST00000471455 DSG2Q14126 1118 aa11.99□□□□□ -0.49
CPSF4-211ENST00000471455 GIGYF2Q6Y7W6 1299 aaKnown RBP11.99□□□□□ -0.49
CPSF4-211ENST00000471455 TTLL7Q6ZT98 887 aa11.99□□□□□ -0.49
CPSF4-211ENST00000471455 NLRP3Q96P20 1036 aa11.99□□□□□ -0.49
CPSF4-211ENST00000471455 DDX21Q9NR30 783 aaKnown RBP eCLIP11.99□□□□□ -0.49
CPSF4-211ENST00000471455 WDR33Q9C0J8 1336 aaKnown RBP11.99□□□□□ -0.49
CPSF4-211ENST00000471455 DLG5Q8TDM6 1919 aa11.99□□□□□ -0.49
CPSF4-211ENST00000471455 UBN2Q6ZU65 1347 aa11.98□□□□□ -0.49
CPSF4-211ENST00000471455 PPIP5K2O43314 1243 aa11.98□□□□□ -0.49
CPSF4-211ENST00000471455 NTSR2O95665 410 aa11.98□□□□□ -0.49
CPSF4-211ENST00000471455 FOXK1P85037 733 aa11.98□□□□□ -0.49
CPSF4-211ENST00000471455 LMOD3Q0VAK6 560 aa11.98□□□□□ -0.49
CPSF4-211ENST00000471455 HSP90AB3PQ58FF7 597 aa11.98□□□□□ -0.49
CPSF4-211ENST00000471455 SUSD4Q5VX71 490 aa11.98□□□□□ -0.49
CPSF4-211ENST00000471455 PAXIP1Q6ZW49 1069 aaPredicted RBP11.98□□□□□ -0.49
CPSF4-211ENST00000471455 ZNF34Q8IZ26 560 aa11.98□□□□□ -0.49
CPSF4-211ENST00000471455 UTP14AQ9BVJ6 771 aaKnown RBP11.98□□□□□ -0.49
CPSF4-211ENST00000471455 TSPYL4Q9UJ04 414 aa11.98□□□□□ -0.49
CPSF4-211ENST00000471455 CDHR2Q9BYE9 1310 aa11.97□□□□□ -0.49
CPSF4-211ENST00000471455 HOXB1P14653 301 aaPredicted RBP11.97□□□□□ -0.49
CPSF4-211ENST00000471455 SCNN1DP51172 638 aa11.97□□□□□ -0.49
Retrieved 100 of 20,778 RNA–protein pairs in 12.3 ms