RNA–Protein interactions for RNA: ENST00000471439.1

VPS13A-210, Transcript of vacuolar protein sorting 13 homolog A, humanhuman

TSL 3

Gene VPS13A, Length 510 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13A-210ENST00000471439 RRAGCQ9HB90 399 aa7.41□□□□□ -1.22
VPS13A-210ENST00000471439 DMGDHQ9UI17 866 aaKnown RBP7.41□□□□□ -1.22
VPS13A-210ENST00000471439 PRR12Q9ULL5 1215 aa7.41□□□□□ -1.22
VPS13A-210ENST00000471439 PTPRTO14522 1441 aa7.41□□□□□ -1.22
VPS13A-210ENST00000471439 SOGA1O94964 1423 aa7.41□□□□□ -1.22
VPS13A-210ENST00000471439 PBRM1Q86U86 1689 aa7.41□□□□□ -1.22
VPS13A-210ENST00000471439 RIMS1Q86UR5 1692 aaKnown RBP7.41□□□□□ -1.22
VPS13A-210ENST00000471439 CARNS1A5YM72 827 aa7.4□□□□□ -1.22
VPS13A-210ENST00000471439 AMPD1P23109 780 aa7.4□□□□□ -1.22
VPS13A-210ENST00000471439 SCNN1AP37088 669 aa7.4□□□□□ -1.22
VPS13A-210ENST00000471439 SWI5Q1ZZU3 235 aa7.4□□□□□ -1.22
VPS13A-210ENST00000471439 SAP130Q9H0E3 1048 aa7.4□□□□□ -1.22
VPS13A-210ENST00000471439 LRRC4BQ9NT99 713 aa7.4□□□□□ -1.22
VPS13A-210ENST00000471439 USP20Q9Y2K6 914 aa7.4□□□□□ -1.22
VPS13A-210ENST00000471439 YEATS2Q9ULM3 1422 aa7.4□□□□□ -1.22
VPS13A-210ENST00000471439 BCORL1Q5H9F3 1711 aa7.4□□□□□ -1.23
VPS13A-210ENST00000471439 MAP3K4Q9Y6R4 1608 aa7.39□□□□□ -1.23
VPS13A-210ENST00000471439 TEX14Q8IWB6 1497 aa7.39□□□□□ -1.23
VPS13A-210ENST00000471439 TGFBR3LH3BV60 316 aa7.39□□□□□ -1.23
VPS13A-210ENST00000471439 CHSY3Q70JA7 882 aa7.39□□□□□ -1.23
VPS13A-210ENST00000471439 KCTD17Q8N5Z5 321 aa7.39□□□□□ -1.23
VPS13A-210ENST00000471439 VTI1AQ96AJ9 217 aa7.39□□□□□ -1.23
VPS13A-210ENST00000471439 SCARF2Q96GP6 870 aaPredicted RBP7.39□□□□□ -1.23
VPS13A-210ENST00000471439 BTBD6Q96KE9 485 aa7.39□□□□□ -1.23
VPS13A-210ENST00000471439 MDFIQ99750 246 aa7.39□□□□□ -1.23
VPS13A-210ENST00000471439 CXXC1Q9P0U4 656 aaPredicted RBP7.39□□□□□ -1.23
VPS13A-210ENST00000471439 ANKIB1Q9P2G1 1089 aa7.39□□□□□ -1.23
VPS13A-210ENST00000471439 WIZO95785 1651 aa7.38□□□□□ -1.23
VPS13A-210ENST00000471439 NUP160Q12769 1436 aa7.38□□□□□ -1.23
VPS13A-210ENST00000471439 GDF11O95390 407 aa7.38□□□□□ -1.23
VPS13A-210ENST00000471439 IDH3AP50213 366 aa7.38□□□□□ -1.23
VPS13A-210ENST00000471439 COX20Q5RI15 118 aa7.38□□□□□ -1.23
VPS13A-210ENST00000471439 SUV39H2Q9H5I1 410 aa7.38□□□□□ -1.23
VPS13A-210ENST00000471439 KCNH4Q9UQ05 1017 aa7.38□□□□□ -1.23
VPS13A-210ENST00000471439 GRIN2AQ12879 1464 aa7.37□□□□□ -1.23
VPS13A-210ENST00000471439 DGKGP49619 791 aa7.37□□□□□ -1.23
VPS13A-210ENST00000471439 KCNQ4P56696 695 aa7.37□□□□□ -1.23
VPS13A-210ENST00000471439 BHMTQ93088 406 aa7.37□□□□□ -1.23
VPS13A-210ENST00000471439 MYO19Q96H55 970 aa7.37□□□□□ -1.23
VPS13A-210ENST00000471439 AVENQ9NQS1 362 aaPredicted RBP7.37□□□□□ -1.23
VPS13A-210ENST00000471439 COL8A1P27658 744 aa7.36□□□□□ -1.23
VPS13A-210ENST00000471439 INPP5BP32019 993 aa7.36□□□□□ -1.23
VPS13A-210ENST00000471439 NAA30Q147X3 362 aaPredicted RBP7.36□□□□□ -1.23
VPS13A-210ENST00000471439 IER5Q5VY09 327 aa7.36□□□□□ -1.23
VPS13A-210ENST00000471439 LINC00114Q6XXX2 140 aa7.36□□□□□ -1.23
VPS13A-210ENST00000471439 TMEM151AQ8N4L1 468 aa7.36□□□□□ -1.23
VPS13A-210ENST00000471439 ITGB2P05107 769 aa7.35□□□□□ -1.23
VPS13A-210ENST00000471439 TBC1D8BQ0IIM8 1120 aa7.35□□□□□ -1.23
VPS13A-210ENST00000471439 C8orf86Q6ZUL3 223 aa7.35□□□□□ -1.23
VPS13A-210ENST00000471439 PODNQ7Z5L7 613 aa7.35□□□□□ -1.23
VPS13A-210ENST00000471439 ETFBKMTQ8IXQ9 262 aa7.35□□□□□ -1.23
VPS13A-210ENST00000471439 CLP1Q92989 425 aaKnown RBP7.35□□□□□ -1.23
VPS13A-210ENST00000471439 ASXL2Q76L83 1435 aa7.35□□□□□ -1.23
VPS13A-210ENST00000471439 ELOA3CA0A087WX78 387 aaPredicted RBP7.34□□□□□ -1.23
VPS13A-210ENST00000471439 TMEM88BA6NKF7 163 aa7.34□□□□□ -1.23
VPS13A-210ENST00000471439 ELOA3DA6NLF2 546 aaPredicted RBP7.34□□□□□ -1.23
VPS13A-210ENST00000471439 TNFRSF10BO14763 440 aa7.34□□□□□ -1.23
VPS13A-210ENST00000471439 SIN3BO75182 1162 aa7.34□□□□□ -1.23
VPS13A-210ENST00000471439 MICAL2O94851 1124 aa7.34□□□□□ -1.23
VPS13A-210ENST00000471439 NFKB1P19838 968 aa7.34□□□□□ -1.23
VPS13A-210ENST00000471439 HIF1AQ16665 826 aa7.34□□□□□ -1.23
VPS13A-210ENST00000471439 C11orf91Q3C1V1 193 aa7.34□□□□□ -1.23
VPS13A-210ENST00000471439 ELOA3BQ3SY89 546 aa7.34□□□□□ -1.23
VPS13A-210ENST00000471439 KRT25Q7Z3Z0 450 aa7.34□□□□□ -1.23
VPS13A-210ENST00000471439 BEND7Q8N7W2 519 aaPredicted RBP7.34□□□□□ -1.23
VPS13A-210ENST00000471439 ELOA3Q8NG57 546 aa7.34□□□□□ -1.23
VPS13A-210ENST00000471439 DCAF5Q96JK2 942 aa7.34□□□□□ -1.23
VPS13A-210ENST00000471439 GSX2Q9BZM3 304 aa7.34□□□□□ -1.23
VPS13A-210ENST00000471439 SEPT3Q9UH03 358 aa7.34□□□□□ -1.23
VPS13A-210ENST00000471439 STARD13Q9Y3M8 1113 aa7.34□□□□□ -1.23
VPS13A-210ENST00000471439 CFAP43Q8NDM7 1665 aa7.34□□□□□ -1.23
VPS13A-210ENST00000471439 OPLAHO14841 1288 aa7.33□□□□□ -1.24
VPS13A-210ENST00000471439 ALBP02768 609 aa7.33□□□□□ -1.24
VPS13A-210ENST00000471439 ATP2B4P23634 1241 aa7.33□□□□□ -1.24
VPS13A-210ENST00000471439 ADH7P40394 386 aa7.33□□□□□ -1.24
VPS13A-210ENST00000471439 KANK3Q6NY19 840 aa7.33□□□□□ -1.24
VPS13A-210ENST00000471439 TREML1Q86YW5 311 aa7.33□□□□□ -1.24
VPS13A-210ENST00000471439 HOMEZQ8IX15 550 aa7.33□□□□□ -1.24
VPS13A-210ENST00000471439 TNFRSF25Q93038 417 aa7.33□□□□□ -1.24
VPS13A-210ENST00000471439 IFT43Q96FT9 208 aa7.33□□□□□ -1.24
VPS13A-210ENST00000471439 IGFLR1Q9H665 355 aa7.33□□□□□ -1.24
VPS13A-210ENST00000471439 ZFATQ9P243 1243 aa7.33□□□□□ -1.24
VPS13A-210ENST00000471439 NAGPAQ9UK23 515 aa7.33□□□□□ -1.24
VPS13A-210ENST00000471439 MKL2Q9ULH7 1088 aa7.33□□□□□ -1.24
VPS13A-210ENST00000471439 PLB1Q6P1J6 1458 aa7.32□□□□□ -1.24
VPS13A-210ENST00000471439 PHF20L1A8MW92 1017 aa7.32□□□□□ -1.24
VPS13A-210ENST00000471439 ARSDP51689 593 aa7.32□□□□□ -1.24
VPS13A-210ENST00000471439 C16orf46Q6P387 395 aa7.32□□□□□ -1.24
VPS13A-210ENST00000471439 RGL4Q8IZJ4 473 aa7.32□□□□□ -1.24
VPS13A-210ENST00000471439 TRIM11Q96F44 468 aa7.32□□□□□ -1.24
VPS13A-210ENST00000471439 KIAA0586Q9BVV6 1533 aa7.32□□□□□ -1.24
VPS13A-210ENST00000471439 ADARB2-AS1A8MUL3 147 aa7.31□□□□□ -1.24
VPS13A-210ENST00000471439 PIP4K2BP78356 416 aa7.31□□□□□ -1.24
VPS13A-210ENST00000471439 UBE2OQ9C0C9 1292 aaKnown RBP7.31□□□□□ -1.24
VPS13A-210ENST00000471439 KRBA1A5PL33 1030 aa7.3□□□□□ -1.24
VPS13A-210ENST00000471439 M0R082 166 aa7.3□□□□□ -1.24
VPS13A-210ENST00000471439 ZBTB39O15060 712 aa7.3□□□□□ -1.24
VPS13A-210ENST00000471439 TARSP26639 723 aaKnown RBP7.3□□□□□ -1.24
VPS13A-210ENST00000471439 CCINQ13939 588 aa7.3□□□□□ -1.24
VPS13A-210ENST00000471439 TRIP4Q15650 581 aaPredicted RBP7.3□□□□□ -1.24
Retrieved 100 of 20,778 RNA–protein pairs in 52.1 ms