RNA–Protein interactions for RNA: ENST00000469439.1

SYNE1-219, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 3

Gene SYNE1, Length 630 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-219ENST00000469439 H7C1W4 665 aa7.94□□□□□ -1.14
SYNE1-219ENST00000469439 RNF225M0QZC1 329 aaPredicted RBP7.94□□□□□ -1.14
SYNE1-219ENST00000469439 GPR25O00155 361 aa7.94□□□□□ -1.14
SYNE1-219ENST00000469439 ABL2P42684 1182 aa7.94□□□□□ -1.14
SYNE1-219ENST00000469439 TMEM132EQ6IEE7 984 aa7.94□□□□□ -1.14
SYNE1-219ENST00000469439 XAGE2Q96GT9 111 aa7.94□□□□□ -1.14
SYNE1-219ENST00000469439 SLC26A8Q96RN1 970 aa7.94□□□□□ -1.14
SYNE1-219ENST00000469439 TIMMDC1Q9NPL8 285 aa7.94□□□□□ -1.14
SYNE1-219ENST00000469439 MBIPQ9NS73 344 aa7.94□□□□□ -1.14
SYNE1-219ENST00000469439 TECPR2O15040 1411 aa7.94□□□□□ -1.14
SYNE1-219ENST00000469439 IFT172Q9UG01 1749 aa7.93□□□□□ -1.14
SYNE1-219ENST00000469439 WASHC4Q2M389 1173 aa7.93□□□□□ -1.14
SYNE1-219ENST00000469439 ESCO1Q5FWF5 840 aa7.93□□□□□ -1.14
SYNE1-219ENST00000469439 FOXR1Q6PIV2 292 aa7.93□□□□□ -1.14
SYNE1-219ENST00000469439 LYPD4Q6UWN0 246 aa7.93□□□□□ -1.14
SYNE1-219ENST00000469439 GTPBP3Q969Y2 492 aaKnown RBP7.93□□□□□ -1.14
SYNE1-219ENST00000469439 PRAM1Q96QH2 718 aa7.93□□□□□ -1.14
SYNE1-219ENST00000469439 ZSCAN10Q96SZ4 725 aaPredicted RBP7.93□□□□□ -1.14
SYNE1-219ENST00000469439 TERF2IPQ9NYB0 399 aa7.93□□□□□ -1.14
SYNE1-219ENST00000469439 PTCH1Q13635 1447 aa7.93□□□□□ -1.14
SYNE1-219ENST00000469439 ANP32CO43423 234 aa7.92□□□□□ -1.14
SYNE1-219ENST00000469439 F11P03951 625 aa7.92□□□□□ -1.14
SYNE1-219ENST00000469439 THBS1P07996 1170 aa7.92□□□□□ -1.14
SYNE1-219ENST00000469439 SRPK2P78362 688 aaKnown RBP7.92□□□□□ -1.14
SYNE1-219ENST00000469439 USP4Q13107 963 aa7.92□□□□□ -1.14
SYNE1-219ENST00000469439 OXLD1Q5BKU9 147 aa7.92□□□□□ -1.14
SYNE1-219ENST00000469439 DIEXFQ68CQ4 756 aaKnown RBP7.92□□□□□ -1.14
SYNE1-219ENST00000469439 HDGFL2Q7Z4V5 671 aaPredicted RBP7.92□□□□□ -1.14
SYNE1-219ENST00000469439 C14orf37Q86TY3 774 aa7.92□□□□□ -1.14
SYNE1-219ENST00000469439 NUCKS1Q9H1E3 243 aaKnown RBP7.92□□□□□ -1.14
SYNE1-219ENST00000469439 ETNK1Q9HBU6 452 aa7.92□□□□□ -1.14
SYNE1-219ENST00000469439 KTN1Q86UP2 1357 aaKnown RBP7.92□□□□□ -1.14
SYNE1-219ENST00000469439 CELA2BP08218 269 aaPredicted RBP7.91□□□□□ -1.14
SYNE1-219ENST00000469439 PROSER2Q86WR7 435 aaPredicted RBP7.91□□□□□ -1.14
SYNE1-219ENST00000469439 TESK2Q96S53 571 aa7.91□□□□□ -1.14
SYNE1-219ENST00000469439 POLR3GLQ9BT43 218 aa7.91□□□□□ -1.14
SYNE1-219ENST00000469439 CCDC7Q96M83 1385 aa7.91□□□□□ -1.14
SYNE1-219ENST00000469439 ADAMTS13Q76LX8 1427 aa7.91□□□□□ -1.14
SYNE1-219ENST00000469439 ADGRB1O14514 1584 aa7.9□□□□□ -1.14
SYNE1-219ENST00000469439 METP08581 1390 aa7.9□□□□□ -1.14
SYNE1-219ENST00000469439 STAU1O95793 577 aaKnown RBP7.9□□□□□ -1.14
SYNE1-219ENST00000469439 SOX11P35716 441 aa7.9□□□□□ -1.14
SYNE1-219ENST00000469439 TRERF1Q96PN7 1200 aa7.9□□□□□ -1.14
SYNE1-219ENST00000469439 C19orf44Q9H6X5 657 aa7.9□□□□□ -1.14
SYNE1-219ENST00000469439 KNSTRNQ9Y448 316 aa7.9□□□□□ -1.14
SYNE1-219ENST00000469439 NKTRP30414 1462 aaKnown RBP7.89□□□□□ -1.15
SYNE1-219ENST00000469439 LMTK3Q96Q04 1460 aa7.89□□□□□ -1.15
SYNE1-219ENST00000469439 A0A1B0GTH6 734 aa7.89□□□□□ -1.15
SYNE1-219ENST00000469439 ATF3P18847 181 aa7.89□□□□□ -1.15
SYNE1-219ENST00000469439 PHKA2P46019 1235 aa7.89□□□□□ -1.15
SYNE1-219ENST00000469439 SCNN1DP51172 638 aa7.89□□□□□ -1.15
SYNE1-219ENST00000469439 MAP3K10Q02779 954 aa7.89□□□□□ -1.15
SYNE1-219ENST00000469439 RASSF7Q02833 373 aa7.89□□□□□ -1.15
SYNE1-219ENST00000469439 MAP7D1Q3KQU3 841 aa7.89□□□□□ -1.15
SYNE1-219ENST00000469439 C4orf17Q53FE4 359 aa7.89□□□□□ -1.15
SYNE1-219ENST00000469439 GNASQ5JWF2 1037 aa7.89□□□□□ -1.15
SYNE1-219ENST00000469439 PLPP7Q8NBV4 271 aa7.89□□□□□ -1.15
SYNE1-219ENST00000469439 COG6Q9Y2V7 657 aa7.89□□□□□ -1.15
SYNE1-219ENST00000469439 BRD4O60885 1362 aaPredicted RBP7.88□□□□□ -1.15
SYNE1-219ENST00000469439 KIF7Q2M1P5 1343 aa7.88□□□□□ -1.15
SYNE1-219ENST00000469439 GTF2E1P29083 439 aaPredicted RBP7.88□□□□□ -1.15
SYNE1-219ENST00000469439 HSPA2P54652 639 aa7.88□□□□□ -1.15
SYNE1-219ENST00000469439 DDX10Q13206 875 aaKnown RBP7.88□□□□□ -1.15
SYNE1-219ENST00000469439 SEMA3FQ13275 785 aa7.88□□□□□ -1.15
SYNE1-219ENST00000469439 TLR1Q15399 786 aa7.88□□□□□ -1.15
SYNE1-219ENST00000469439 TMEM214Q6NUQ4 689 aaKnown RBP7.88□□□□□ -1.15
SYNE1-219ENST00000469439 RHBDD1Q8TEB9 315 aa7.88□□□□□ -1.15
SYNE1-219ENST00000469439 CDK19Q9BWU1 502 aa7.88□□□□□ -1.15
SYNE1-219ENST00000469439 GPAMQ9HCL2 828 aa7.88□□□□□ -1.15
SYNE1-219ENST00000469439 MX2P20592 715 aa7.87□□□□□ -1.15
SYNE1-219ENST00000469439 UBAP2LQ14157 1087 aaKnown RBP7.87□□□□□ -1.15
SYNE1-219ENST00000469439 LBRQ14739 615 aaKnown RBP7.87□□□□□ -1.15
SYNE1-219ENST00000469439 RALBP1Q15311 655 aa7.87□□□□□ -1.15
SYNE1-219ENST00000469439 TMEM151AQ8N4L1 468 aa7.87□□□□□ -1.15
SYNE1-219ENST00000469439 KCTD17Q8N5Z5 321 aa7.87□□□□□ -1.15
SYNE1-219ENST00000469439 TMC1Q8TDI8 760 aa7.87□□□□□ -1.15
SYNE1-219ENST00000469439 CPS1P31327 1500 aa7.87□□□□□ -1.15
SYNE1-219ENST00000469439 MSH6P52701 1360 aa7.86□□□□□ -1.15
SYNE1-219ENST00000469439 IQGAP1P46940 1657 aa7.86□□□□□ -1.15
SYNE1-219ENST00000469439 CGNL1Q0VF96 1302 aa7.86□□□□□ -1.15
SYNE1-219ENST00000469439 GDF11O95390 407 aa7.86□□□□□ -1.15
SYNE1-219ENST00000469439 INHAP05111 366 aa7.86□□□□□ -1.15
SYNE1-219ENST00000469439 GDF10P55107 478 aa7.86□□□□□ -1.15
SYNE1-219ENST00000469439 MARSP56192 900 aaKnown RBP7.86□□□□□ -1.15
SYNE1-219ENST00000469439 SAFB2Q14151 953 aaKnown RBP eCLIP7.86□□□□□ -1.15
SYNE1-219ENST00000469439 WAPLQ7Z5K2 1190 aa7.86□□□□□ -1.15
SYNE1-219ENST00000469439 ACDQ96AP0 544 aa7.86□□□□□ -1.15
SYNE1-219ENST00000469439 HIRIP3Q9BW71 556 aaPredicted RBP7.86□□□□□ -1.15
SYNE1-219ENST00000469439 MYO5BQ9ULV0 1848 aa7.86□□□□□ -1.15
SYNE1-219ENST00000469439 DCCP43146 1447 aa7.86□□□□□ -1.15
SYNE1-219ENST00000469439 ANKARQ7Z5J8 1434 aa7.86□□□□□ -1.15
SYNE1-219ENST00000469439 NUDT16Q96DE0 195 aaKnown RBP7.85□□□□□ -1.15
SYNE1-219ENST00000469439 SCARF2Q96GP6 870 aaPredicted RBP7.85□□□□□ -1.15
SYNE1-219ENST00000469439 CFHR5Q9BXR6 569 aa7.85□□□□□ -1.15
SYNE1-219ENST00000469439 ENAMQ9NRM1 1142 aa7.85□□□□□ -1.15
SYNE1-219ENST00000469439 POLR1AO95602 1720 aaPredicted RBP7.85□□□□□ -1.15
SYNE1-219ENST00000469439 NSD2O96028 1365 aa7.84□□□□□ -1.15
SYNE1-219ENST00000469439 ROBO2Q9HCK4 1378 aa7.84□□□□□ -1.15
SYNE1-219ENST00000469439 NPC1L1Q9UHC9 1359 aa7.84□□□□□ -1.15
SYNE1-219ENST00000469439 KNDC1Q76NI1 1749 aa7.84□□□□□ -1.15
Retrieved 100 of 20,778 RNA–protein pairs in 26.2 ms