RNA–Protein interactions for RNA: ENST00000466897.1

NPHP4-205, Transcript of nephrocystin 4, humanhuman

TSL 1 (best)

Gene NPHP4, Length 1,192 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NPHP4-205ENST00000466897 CCDC152Q4G0S7 254 aa19.04■□□□□ 0.64
NPHP4-205ENST00000466897 CCDC24Q8N4L8 307 aa19.04■□□□□ 0.64
NPHP4-205ENST00000466897 TTLL11Q8NHH1 800 aa19.04■□□□□ 0.64
NPHP4-205ENST00000466897 LRRFIP2Q9Y608 721 aaKnown RBP19.04■□□□□ 0.64
NPHP4-205ENST00000466897 SPEF2Q9C093 1822 aa19.04■□□□□ 0.64
NPHP4-205ENST00000466897 ARFGEF1Q9Y6D6 1849 aa19.03■□□□□ 0.64
NPHP4-205ENST00000466897 SRGNP10124 158 aa19.03■□□□□ 0.64
NPHP4-205ENST00000466897 HOXA10P31260 410 aaPredicted RBP19.03■□□□□ 0.64
NPHP4-205ENST00000466897 C3orf67Q6ZVT6 689 aa19.03■□□□□ 0.64
NPHP4-205ENST00000466897 ANKRD44Q8N8A2 993 aa19.03■□□□□ 0.64
NPHP4-205ENST00000466897 BICC1Q9H694 974 aaKnown RBP19.03■□□□□ 0.64
NPHP4-205ENST00000466897 EPHA10Q5JZY3 1008 aa19.02■□□□□ 0.64
NPHP4-205ENST00000466897 PPP1R1BQ9UD71 204 aaPredicted RBP19.02■□□□□ 0.64
NPHP4-205ENST00000466897 LRRC37AA6NMS7 1700 aa19.02■□□□□ 0.63
NPHP4-205ENST00000466897 H0YIN7 160 aa19.01■□□□□ 0.63
NPHP4-205ENST00000466897 NPR1P16066 1061 aa19.01■□□□□ 0.63
NPHP4-205ENST00000466897 STYK1Q6J9G0 422 aa19.01■□□□□ 0.63
NPHP4-205ENST00000466897 C2CD5Q86YS7 1000 aa19.01■□□□□ 0.63
NPHP4-205ENST00000466897 MASTLQ96GX5 879 aa19.01■□□□□ 0.63
NPHP4-205ENST00000466897 LMBR1LQ6UX01 489 aa19■□□□□ 0.63
NPHP4-205ENST00000466897 RPGRQ92834 1020 aaKnown RBP19■□□□□ 0.63
NPHP4-205ENST00000466897 CRAMP1Q96RY5 1269 aa19■□□□□ 0.63
NPHP4-205ENST00000466897 FHDC1Q9C0D6 1143 aaPredicted RBP19■□□□□ 0.63
NPHP4-205ENST00000466897 A0A1B0GUL6 1792 aa19■□□□□ 0.63
NPHP4-205ENST00000466897 SLX4Q8IY92 1834 aa19■□□□□ 0.63
NPHP4-205ENST00000466897 RBM17Q96I25 401 aaKnown RBP18.99■□□□□ 0.63
NPHP4-205ENST00000466897 GREM2Q9H772 168 aa18.99■□□□□ 0.63
NPHP4-205ENST00000466897 KCNA3P22001 575 aa18.98■□□□□ 0.63
NPHP4-205ENST00000466897 ALDH1B1P30837 517 aa18.98■□□□□ 0.63
NPHP4-205ENST00000466897 FAM161AQ3B820 660 aa18.98■□□□□ 0.63
NPHP4-205ENST00000466897 DDX46Q7L014 1031 aaKnown RBP18.98■□□□□ 0.63
NPHP4-205ENST00000466897 RPAP2Q8IXW5 612 aaPredicted RBP18.98■□□□□ 0.63
NPHP4-205ENST00000466897 COL4A1P02462 1669 aa18.98■□□□□ 0.63
NPHP4-205ENST00000466897 DPEP1P16444 411 aa18.97■□□□□ 0.63
NPHP4-205ENST00000466897 ITGA6P23229 1130 aa18.97■□□□□ 0.63
NPHP4-205ENST00000466897 CHRNA5P30532 468 aa18.97■□□□□ 0.63
NPHP4-205ENST00000466897 IFIT5Q13325 482 aaKnown RBP18.97■□□□□ 0.63
NPHP4-205ENST00000466897 CEP85Q6P2H3 762 aa18.97■□□□□ 0.63
NPHP4-205ENST00000466897 EXOC6Q8TAG9 804 aa18.97■□□□□ 0.63
NPHP4-205ENST00000466897 CNKSR1Q969H4 720 aa18.97■□□□□ 0.63
NPHP4-205ENST00000466897 CDC5LQ99459 802 aaKnown RBP18.97■□□□□ 0.63
NPHP4-205ENST00000466897 SYT17Q9BSW7 474 aa18.97■□□□□ 0.63
NPHP4-205ENST00000466897 ANKRD18BA2A2Z9 1011 aa18.96■□□□□ 0.63
NPHP4-205ENST00000466897 NEFLP07196 543 aa18.96■□□□□ 0.63
NPHP4-205ENST00000466897 ATP8B2P98198 1209 aa18.96■□□□□ 0.63
NPHP4-205ENST00000466897 GRAPQ13588 217 aa18.96■□□□□ 0.63
NPHP4-205ENST00000466897 CCDC57Q2TAC2 916 aa18.96■□□□□ 0.63
NPHP4-205ENST00000466897 TMC4Q7Z404 712 aa18.96■□□□□ 0.63
NPHP4-205ENST00000466897 GRAPLQ8TC17 118 aaPredicted RBP18.96■□□□□ 0.63
NPHP4-205ENST00000466897 C1orf115Q9H7X2 142 aa18.96■□□□□ 0.63
NPHP4-205ENST00000466897 A0A0G2JLW4 131 aa18.95■□□□□ 0.62
NPHP4-205ENST00000466897 POLA2Q14181 598 aa18.95■□□□□ 0.62
NPHP4-205ENST00000466897 KLHL34Q8N239 644 aa18.95■□□□□ 0.62
NPHP4-205ENST00000466897 SSH3Q8TE77 659 aa18.95■□□□□ 0.62
NPHP4-205ENST00000466897 LTBP1Q14766 1721 aa18.94■□□□□ 0.62
NPHP4-205ENST00000466897 SRGAP3O43295 1099 aa18.94■□□□□ 0.62
NPHP4-205ENST00000466897 BBOX1O75936 387 aa18.94■□□□□ 0.62
NPHP4-205ENST00000466897 RFX5P48382 616 aaPredicted RBP18.94■□□□□ 0.62
NPHP4-205ENST00000466897 IRX6P78412 446 aaPredicted RBP18.94■□□□□ 0.62
NPHP4-205ENST00000466897 NLGN2Q8NFZ4 835 aa18.94■□□□□ 0.62
NPHP4-205ENST00000466897 PIM2Q9P1W9 311 aa18.94■□□□□ 0.62
NPHP4-205ENST00000466897 FBXO3Q9UK99 471 aa18.94■□□□□ 0.62
NPHP4-205ENST00000466897 CHMP3Q9Y3E7 222 aa18.94■□□□□ 0.62
NPHP4-205ENST00000466897 PNMA6EA0A0J9YXQ4 647 aa18.93■□□□□ 0.62
NPHP4-205ENST00000466897 RPS8P62241 208 aaKnown RBP18.93■□□□□ 0.62
NPHP4-205ENST00000466897 ERICH6BQ5W0A0 696 aa18.93■□□□□ 0.62
NPHP4-205ENST00000466897 ANKRD18AQ8IVF6 992 aa18.93■□□□□ 0.62
NPHP4-205ENST00000466897 TTLL6Q8N841 843 aa18.93■□□□□ 0.62
NPHP4-205ENST00000466897 ZNF622Q969S3 477 aaKnown RBP eCLIP18.93■□□□□ 0.62
NPHP4-205ENST00000466897 CCDC85AQ96PX6 553 aaPredicted RBP18.93■□□□□ 0.62
NPHP4-205ENST00000466897 SEC31BQ9NQW1 1179 aa18.93■□□□□ 0.62
NPHP4-205ENST00000466897 FER1L6Q2WGJ9 1857 aa18.92■□□□□ 0.62
NPHP4-205ENST00000466897 HMMRO75330 724 aa18.92■□□□□ 0.62
NPHP4-205ENST00000466897 PRPF40BQ6NWY9 871 aaKnown RBP18.92■□□□□ 0.62
NPHP4-205ENST00000466897 CELF1Q92879 486 aaKnown RBP18.92■□□□□ 0.62
NPHP4-205ENST00000466897 COPRSQ9NQ92 184 aa18.92■□□□□ 0.62
NPHP4-205ENST00000466897 IGHMBP2P38935 993 aaKnown RBP18.91■□□□□ 0.62
NPHP4-205ENST00000466897 PTPN12Q05209 780 aaKnown RBP18.91■□□□□ 0.62
NPHP4-205ENST00000466897 SIRT2Q8IXJ6 389 aa18.91■□□□□ 0.62
NPHP4-205ENST00000466897 BSDC1Q9NW68 430 aaPredicted RBP18.91■□□□□ 0.62
NPHP4-205ENST00000466897 PCDHB15Q9Y5E8 787 aa18.91■□□□□ 0.62
NPHP4-205ENST00000466897 PPEF1O14829 653 aaPredicted RBP18.9■□□□□ 0.62
NPHP4-205ENST00000466897 TAF7LQ5H9L4 462 aa18.9■□□□□ 0.62
NPHP4-205ENST00000466897 CIAO1O76071 339 aa18.89■□□□□ 0.61
NPHP4-205ENST00000466897 GRIPAP1Q4V328 841 aa18.89■□□□□ 0.61
NPHP4-205ENST00000466897 DALRD3Q5D0E6 543 aaKnown RBP18.89■□□□□ 0.61
NPHP4-205ENST00000466897 CC2D2BQ6DHV5 1058 aa18.89■□□□□ 0.61
NPHP4-205ENST00000466897 C7orf43Q8WVR3 580 aa18.89■□□□□ 0.61
NPHP4-205ENST00000466897 MPHOSPH8Q99549 860 aa18.89■□□□□ 0.61
NPHP4-205ENST00000466897 NOP58Q9Y2X3 529 aaKnown RBP18.89■□□□□ 0.61
NPHP4-205ENST00000466897 ATP6V0A2Q9Y487 856 aa18.89■□□□□ 0.61
NPHP4-205ENST00000466897 SNED1Q8TER0 1413 aa18.89■□□□□ 0.61
NPHP4-205ENST00000466897 HDAC1Q13547 482 aaPredicted RBP18.88■□□□□ 0.61
NPHP4-205ENST00000466897 SOGA3Q5TF21 947 aa18.88■□□□□ 0.61
NPHP4-205ENST00000466897 LDHAL6AQ6ZMR3 332 aa18.88■□□□□ 0.61
NPHP4-205ENST00000466897 SP8Q8IXZ3 490 aa18.88■□□□□ 0.61
NPHP4-205ENST00000466897 ARAP2Q8WZ64 1704 aa18.87■□□□□ 0.61
NPHP4-205ENST00000466897 ZNF594Q96JF6 807 aaPredicted RBP18.87■□□□□ 0.61
NPHP4-205ENST00000466897 MROH5Q6ZUA9 1318 aa18.86■□□□□ 0.61
NPHP4-205ENST00000466897 EYA2O00167 538 aa18.86■□□□□ 0.61
Retrieved 100 of 20,778 RNA–protein pairs in 53.6 ms