RNA–Protein interactions for RNA: ENST00000466192.5

COL9A3-205, Transcript of collagen type IX alpha 3 chain, humanhuman

TSL 2

Gene COL9A3, Length 2,194 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL9A3-205ENST00000466192 HSPA1LP34931 641 aa22.13■■□□□ 1.13
COL9A3-205ENST00000466192 LSG1Q9H089 658 aaKnown RBP22.12■■□□□ 1.13
COL9A3-205ENST00000466192 BTAF1O14981 1849 aa22.12■■□□□ 1.13
COL9A3-205ENST00000466192 RAD50Q92878 1312 aa22.12■■□□□ 1.13
COL9A3-205ENST00000466192 ANAPC15P60006 121 aa22.12■■□□□ 1.13
COL9A3-205ENST00000466192 PTF1AQ7RTS3 328 aa22.12■■□□□ 1.13
COL9A3-205ENST00000466192 GPR108Q9NPR9 543 aa22.12■■□□□ 1.13
COL9A3-205ENST00000466192 TRMT112Q9UI30 125 aaKnown RBP22.12■■□□□ 1.13
COL9A3-205ENST00000466192 HSPA4P34932 840 aa22.11■■□□□ 1.13
COL9A3-205ENST00000466192 GSE1Q14687 1217 aa22.11■■□□□ 1.13
COL9A3-205ENST00000466192 RUFY2Q8WXA3 655 aa22.11■■□□□ 1.13
COL9A3-205ENST00000466192 IL17RAQ96F46 866 aa22.11■■□□□ 1.13
COL9A3-205ENST00000466192 IRS4O14654 1257 aaPredicted RBP22.1■■□□□ 1.13
COL9A3-205ENST00000466192 TTLL11Q8NHH1 800 aa22.1■■□□□ 1.13
COL9A3-205ENST00000466192 EDC3Q96F86 508 aaKnown RBP22.1■■□□□ 1.13
COL9A3-205ENST00000466192 CIZ1Q9ULV3 898 aaPredicted RBP22.1■■□□□ 1.13
COL9A3-205ENST00000466192 ZNF609O15014 1411 aa22.1■■□□□ 1.13
COL9A3-205ENST00000466192 TIMM10P62072 90 aa22.09■■□□□ 1.13
COL9A3-205ENST00000466192 MEX3CQ5U5Q3 659 aaKnown RBP22.09■■□□□ 1.13
COL9A3-205ENST00000466192 CAMTA2O94983 1202 aa22.09■■□□□ 1.13
COL9A3-205ENST00000466192 NEK4P51957 841 aa22.09■■□□□ 1.13
COL9A3-205ENST00000466192 IFIT5Q13325 482 aaKnown RBP22.09■■□□□ 1.13
COL9A3-205ENST00000466192 NEUROD6Q96NK8 337 aa22.09■■□□□ 1.13
COL9A3-205ENST00000466192 FSD1Q9BTV5 496 aa22.09■■□□□ 1.13
COL9A3-205ENST00000466192 NHSQ6T4R5 1651 aa22.09■■□□□ 1.13
COL9A3-205ENST00000466192 MCM4P33991 863 aa22.08■■□□□ 1.13
COL9A3-205ENST00000466192 CTSWP56202 376 aa22.08■■□□□ 1.13
COL9A3-205ENST00000466192 AEBP2Q6ZN18 517 aaPredicted RBP22.08■■□□□ 1.13
COL9A3-205ENST00000466192 KIAA1211Q6ZU35 1233 aa22.08■■□□□ 1.13
COL9A3-205ENST00000466192 FAM227BQ96M60 508 aa22.08■■□□□ 1.13
COL9A3-205ENST00000466192 FBXO3Q9UK99 471 aa22.08■■□□□ 1.13
COL9A3-205ENST00000466192 NDUFB9Q9Y6M9 179 aa22.08■■□□□ 1.13
COL9A3-205ENST00000466192 BCORQ6W2J9 1755 aa22.08■■□□□ 1.13
COL9A3-205ENST00000466192 HIP1O00291 1037 aa22.08■■□□□ 1.12
COL9A3-205ENST00000466192 NMIQ13287 307 aaPredicted RBP22.08■■□□□ 1.12
COL9A3-205ENST00000466192 LINC00116Q8NCU8 138 aa22.08■■□□□ 1.12
COL9A3-205ENST00000466192 GREM2Q9H772 168 aa22.08■■□□□ 1.12
COL9A3-205ENST00000466192 KCNQ4P56696 695 aa22.07■■□□□ 1.12
COL9A3-205ENST00000466192 FAM182BQ5T319 152 aa22.07■■□□□ 1.12
COL9A3-205ENST00000466192 SUSD4Q5VX71 490 aa22.06■■□□□ 1.12
COL9A3-205ENST00000466192 GJD4Q96KN9 370 aaPredicted RBP22.06■■□□□ 1.12
COL9A3-205ENST00000466192 HAUS7Q99871 368 aa22.06■■□□□ 1.12
COL9A3-205ENST00000466192 SBF2Q86WG5 1849 aa22.06■■□□□ 1.12
COL9A3-205ENST00000466192 AFF2P51816 1311 aa22.06■■□□□ 1.12
COL9A3-205ENST00000466192 A0A1B0GUL7 405 aa22.06■■□□□ 1.12
COL9A3-205ENST00000466192 PDE8AO60658 829 aa22.06■■□□□ 1.12
COL9A3-205ENST00000466192 ITGA6P23229 1130 aa22.06■■□□□ 1.12
COL9A3-205ENST00000466192 PTH1RQ03431 593 aa22.06■■□□□ 1.12
COL9A3-205ENST00000466192 TAF7LQ5H9L4 462 aa22.06■■□□□ 1.12
COL9A3-205ENST00000466192 TNPO1Q92973 898 aaKnown RBP22.06■■□□□ 1.12
COL9A3-205ENST00000466192 CEP126Q9P2H0 1117 aa22.06■■□□□ 1.12
COL9A3-205ENST00000466192 DNAJC2Q99543 621 aaKnown RBP22.05■■□□□ 1.12
COL9A3-205ENST00000466192 DDX60Q8IY21 1712 aaKnown RBP22.05■■□□□ 1.12
COL9A3-205ENST00000466192 A0A0D9SFI3 127 aa22.05■■□□□ 1.12
COL9A3-205ENST00000466192 RAB3GAP1Q15042 981 aa22.05■■□□□ 1.12
COL9A3-205ENST00000466192 SNRKQ9NRH2 765 aa22.04■■□□□ 1.12
COL9A3-205ENST00000466192 SNX14Q9Y5W7 946 aa22.04■■□□□ 1.12
COL9A3-205ENST00000466192 RASEFQ8IZ41 740 aa22.03■■□□□ 1.12
COL9A3-205ENST00000466192 RIC1Q4ADV7 1423 aa22.03■■□□□ 1.12
COL9A3-205ENST00000466192 ANKRD18BA2A2Z9 1011 aa22.02■■□□□ 1.12
COL9A3-205ENST00000466192 FAM177BA6PVY3 158 aa22.02■■□□□ 1.12
COL9A3-205ENST00000466192 RIPOR2Q9Y4F9 1068 aa22.02■■□□□ 1.12
COL9A3-205ENST00000466192 CCDC171Q6TFL3 1326 aa22.02■■□□□ 1.12
COL9A3-205ENST00000466192 SH3TC1Q8TE82 1336 aa22.02■■□□□ 1.12
COL9A3-205ENST00000466192 LAMB2P55268 1798 aa22.02■■□□□ 1.12
COL9A3-205ENST00000466192 UTP14AQ9BVJ6 771 aaKnown RBP22.02■■□□□ 1.12
COL9A3-205ENST00000466192 UPF3BQ9BZI7 483 aaKnown RBP22.02■■□□□ 1.12
COL9A3-205ENST00000466192 MED23Q9ULK4 1368 aa22.01■■□□□ 1.11
COL9A3-205ENST00000466192 ATRNO75882 1429 aa22.01■■□□□ 1.11
COL9A3-205ENST00000466192 PARP10Q53GL7 1025 aa22.01■■□□□ 1.11
COL9A3-205ENST00000466192 LDHAL6AQ6ZMR3 332 aa22.01■■□□□ 1.11
COL9A3-205ENST00000466192 DDX46Q7L014 1031 aaKnown RBP22.01■■□□□ 1.11
COL9A3-205ENST00000466192 NIP7Q9Y221 180 aaKnown RBP eCLIP22.01■■□□□ 1.11
COL9A3-205ENST00000466192 HCLS1P14317 486 aaPredicted RBP22.01■■□□□ 1.11
COL9A3-205ENST00000466192 AK7Q96M32 723 aa22.01■■□□□ 1.11
COL9A3-205ENST00000466192 AKAP2Q9Y2D5 859 aa22.01■■□□□ 1.11
COL9A3-205ENST00000466192 CNTNAP4Q9C0A0 1308 aa22.01■■□□□ 1.11
COL9A3-205ENST00000466192 RFX7Q2KHR2 1363 aa22■■□□□ 1.11
COL9A3-205ENST00000466192 LY75O60449 1722 aa22■■□□□ 1.11
COL9A3-205ENST00000466192 TAF1LQ8IZX4 1826 aa22■■□□□ 1.11
COL9A3-205ENST00000466192 ZGPATQ8N5A5 531 aaKnown RBP22■■□□□ 1.11
COL9A3-205ENST00000466192 SPEF2Q9C093 1822 aa22■■□□□ 1.11
COL9A3-205ENST00000466192 CHGBP05060 677 aa21.99■■□□□ 1.11
COL9A3-205ENST00000466192 ADORA1P30542 326 aa21.99■■□□□ 1.11
COL9A3-205ENST00000466192 ONECUT3O60422 494 aaPredicted RBP21.99■■□□□ 1.11
COL9A3-205ENST00000466192 NTSR2O95665 410 aa21.99■■□□□ 1.11
COL9A3-205ENST00000466192 SSFA2P28290 1259 aa21.99■■□□□ 1.11
COL9A3-205ENST00000466192 NOL8Q76FK4 1167 aaKnown RBP21.99■■□□□ 1.11
COL9A3-205ENST00000466192 ZNF589Q86UQ0 364 aaPredicted RBP21.99■■□□□ 1.11
COL9A3-205ENST00000466192 KBTBD3Q8NAB2 608 aa21.99■■□□□ 1.11
COL9A3-205ENST00000466192 MAP4K1Q92918 833 aa21.99■■□□□ 1.11
COL9A3-205ENST00000466192 XAGE2Q96GT9 111 aa21.99■■□□□ 1.11
COL9A3-205ENST00000466192 TMX3Q96JJ7 454 aa21.99■■□□□ 1.11
COL9A3-205ENST00000466192 PAG1Q9NWQ8 432 aa21.99■■□□□ 1.11
COL9A3-205ENST00000466192 LRP5O75197 1615 aa21.99■■□□□ 1.11
COL9A3-205ENST00000466192 GOLIM4O00461 696 aa21.98■■□□□ 1.11
COL9A3-205ENST00000466192 MCM2P49736 904 aa21.98■■□□□ 1.11
COL9A3-205ENST00000466192 NECTIN1Q15223 517 aa21.98■■□□□ 1.11
COL9A3-205ENST00000466192 METTL24Q5JXM2 366 aa21.98■■□□□ 1.11
COL9A3-205ENST00000466192 CNNM1Q9NRU3 951 aa21.98■■□□□ 1.11
Retrieved 100 of 20,778 RNA–protein pairs in 44.2 ms