RNA–Protein interactions for RNA: ENST00000466159.6

SYNE1-217, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 1 (best) BASIC

Gene SYNE1, Length 2,610 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-217ENST00000466159 UBE2Q2Q8WVN8 375 aa10.71□□□□□ -0.69
SYNE1-217ENST00000466159 TPCN1Q9ULQ1 816 aa10.71□□□□□ -0.69
SYNE1-217ENST00000466159 CCDC9Q9Y3X0 531 aaKnown RBP10.71□□□□□ -0.69
SYNE1-217ENST00000466159 LAMB4A4D0S4 1761 aa10.71□□□□□ -0.69
SYNE1-217ENST00000466159 COL15A1P39059 1388 aa10.71□□□□□ -0.69
SYNE1-217ENST00000466159 F13A1P00488 732 aa10.71□□□□□ -0.69
SYNE1-217ENST00000466159 FOXO4P98177 505 aa10.71□□□□□ -0.69
SYNE1-217ENST00000466159 ZSCAN31Q96LW9 406 aaPredicted RBP10.71□□□□□ -0.69
SYNE1-217ENST00000466159 DNAJC2Q99543 621 aaKnown RBP10.71□□□□□ -0.69
SYNE1-217ENST00000466159 SH2B1Q9NRF2 756 aaPredicted RBP10.71□□□□□ -0.69
SYNE1-217ENST00000466159 H7C1W4 665 aa10.71□□□□□ -0.7
SYNE1-217ENST00000466159 TAF5LO75529 589 aa10.71□□□□□ -0.7
SYNE1-217ENST00000466159 PARP4Q9UKK3 1724 aaKnown RBP10.7□□□□□ -0.7
SYNE1-217ENST00000466159 ERVV-2B6SEH9 535 aa10.7□□□□□ -0.7
SYNE1-217ENST00000466159 PSMA5P28066 241 aa10.7□□□□□ -0.7
SYNE1-217ENST00000466159 RNF20Q5VTR2 975 aa10.7□□□□□ -0.7
SYNE1-217ENST00000466159 ZBTB3Q9H5J0 574 aa10.7□□□□□ -0.7
SYNE1-217ENST00000466159 BLOC1S2Q6QNY1 142 aa10.7□□□□□ -0.7
SYNE1-217ENST00000466159 CCDC129Q6ZRS4 1044 aa10.7□□□□□ -0.7
SYNE1-217ENST00000466159 TMEM87AQ8NBN3 555 aa10.7□□□□□ -0.7
SYNE1-217ENST00000466159 RNF214Q8ND24 703 aa10.7□□□□□ -0.7
SYNE1-217ENST00000466159 SEC62Q99442 399 aaKnown RBP10.7□□□□□ -0.7
SYNE1-217ENST00000466159 STRN4Q9NRL3 753 aa10.7□□□□□ -0.7
SYNE1-217ENST00000466159 MTMR6Q9Y217 621 aa10.7□□□□□ -0.7
SYNE1-217ENST00000466159 IL2RBP14784 551 aa10.69□□□□□ -0.7
SYNE1-217ENST00000466159 DDX46Q7L014 1031 aaKnown RBP10.69□□□□□ -0.7
SYNE1-217ENST00000466159 CWC25Q9NXE8 425 aaPredicted RBP10.69□□□□□ -0.7
SYNE1-217ENST00000466159 COL5A2P05997 1499 aaPredicted RBP10.69□□□□□ -0.7
SYNE1-217ENST00000466159 JCADQ9P266 1359 aa10.69□□□□□ -0.7
SYNE1-217ENST00000466159 FIBPO43427 364 aa10.69□□□□□ -0.7
SYNE1-217ENST00000466159 RPS6KB1P23443 525 aa10.69□□□□□ -0.7
SYNE1-217ENST00000466159 ATG9AQ7Z3C6 839 aa10.69□□□□□ -0.7
SYNE1-217ENST00000466159 SYAP1Q96A49 352 aaPredicted RBP10.69□□□□□ -0.7
SYNE1-217ENST00000466159 NEUROD6Q96NK8 337 aa10.69□□□□□ -0.7
SYNE1-217ENST00000466159 HAUS7Q99871 368 aa10.69□□□□□ -0.7
SYNE1-217ENST00000466159 SLAIN2Q9P270 581 aa10.69□□□□□ -0.7
SYNE1-217ENST00000466159 SOS2Q07890 1332 aaPredicted RBP10.68□□□□□ -0.7
SYNE1-217ENST00000466159 ZNF609O15014 1411 aa10.68□□□□□ -0.7
SYNE1-217ENST00000466159 VPS37CA5D8V6 355 aaPredicted RBP10.68□□□□□ -0.7
SYNE1-217ENST00000466159 TIMM10P62072 90 aa10.68□□□□□ -0.7
SYNE1-217ENST00000466159 DNM1Q05193 864 aaKnown RBP10.68□□□□□ -0.7
SYNE1-217ENST00000466159 NKX1-1Q15270 411 aaPredicted RBP10.68□□□□□ -0.7
SYNE1-217ENST00000466159 KCPQ6ZWJ8 1503 aa10.68□□□□□ -0.7
SYNE1-217ENST00000466159 UBR2Q8IWV8 1755 aa10.68□□□□□ -0.7
SYNE1-217ENST00000466159 TOB2Q14106 344 aaPredicted RBP10.68□□□□□ -0.7
SYNE1-217ENST00000466159 SLFNL1Q499Z3 407 aa10.68□□□□□ -0.7
SYNE1-217ENST00000466159 USPL1Q5W0Q7 1092 aa10.68□□□□□ -0.7
SYNE1-217ENST00000466159 ZNF594Q96JF6 807 aaPredicted RBP10.68□□□□□ -0.7
SYNE1-217ENST00000466159 PDLIM2Q96JY6 352 aa10.68□□□□□ -0.7
SYNE1-217ENST00000466159 CARD10Q9BWT7 1032 aa10.68□□□□□ -0.7
SYNE1-217ENST00000466159 TSPY26PQ9H489 355 aa10.68□□□□□ -0.7
SYNE1-217ENST00000466159 NUP188Q5SRE5 1749 aa10.67□□□□□ -0.7
SYNE1-217ENST00000466159 TSGA10IPQ3SY00 556 aa10.67□□□□□ -0.7
SYNE1-217ENST00000466159 LRRC24Q50LG9 513 aa10.67□□□□□ -0.7
SYNE1-217ENST00000466159 HMG20BQ9P0W2 317 aa10.67□□□□□ -0.7
SYNE1-217ENST00000466159 ATP6V1DQ9Y5K8 247 aa10.67□□□□□ -0.7
SYNE1-217ENST00000466159 UBE2HP62256 183 aa10.67□□□□□ -0.7
SYNE1-217ENST00000466159 STK3Q13188 491 aa10.67□□□□□ -0.7
SYNE1-217ENST00000466159 LARP1BQ659C4 914 aaKnown RBP10.67□□□□□ -0.7
SYNE1-217ENST00000466159 TJP1Q07157 1748 aa10.66□□□□□ -0.7
SYNE1-217ENST00000466159 EVA1CP58658 441 aa10.66□□□□□ -0.7
SYNE1-217ENST00000466159 ANKRD1Q15327 319 aa10.66□□□□□ -0.7
SYNE1-217ENST00000466159 MCMDC2Q4G0Z9 681 aa10.66□□□□□ -0.7
SYNE1-217ENST00000466159 CCDC191Q8NCU4 936 aa10.66□□□□□ -0.7
SYNE1-217ENST00000466159 ZNF330Q9Y3S2 320 aaPredicted RBP10.66□□□□□ -0.7
SYNE1-217ENST00000466159 GOLIM4O00461 696 aa10.66□□□□□ -0.7
SYNE1-217ENST00000466159 ZSCAN30Q86W11 494 aa10.66□□□□□ -0.7
SYNE1-217ENST00000466159 KBTBD3Q8NAB2 608 aa10.66□□□□□ -0.7
SYNE1-217ENST00000466159 ALDH8A1Q9H2A2 487 aaPredicted RBP10.66□□□□□ -0.7
SYNE1-217ENST00000466159 ZNF335Q9H4Z2 1342 aaPredicted RBP10.66□□□□□ -0.7
SYNE1-217ENST00000466159 SHANK3Q9BYB0 1731 aa10.66□□□□□ -0.7
SYNE1-217ENST00000466159 PHF14O94880 888 aa10.65□□□□□ -0.7
SYNE1-217ENST00000466159 CYP21A2P08686 494 aa10.65□□□□□ -0.7
SYNE1-217ENST00000466159 CDC37L1Q7L3B6 337 aa10.65□□□□□ -0.7
SYNE1-217ENST00000466159 FERMT3Q86UX7 667 aa10.65□□□□□ -0.7
SYNE1-217ENST00000466159 NEK1Q96PY6 1258 aa10.65□□□□□ -0.7
SYNE1-217ENST00000466159 PUS3Q9BZE2 481 aaKnown RBP10.65□□□□□ -0.7
SYNE1-217ENST00000466159 EYA2O00167 538 aa10.65□□□□□ -0.71
SYNE1-217ENST00000466159 IL15P40933 162 aaPredicted RBP10.65□□□□□ -0.71
SYNE1-217ENST00000466159 CCDC183Q5T5S1 534 aa10.65□□□□□ -0.71
SYNE1-217ENST00000466159 FAM173BQ6P4H8 233 aa10.65□□□□□ -0.71
SYNE1-217ENST00000466159 PAG1Q9NWQ8 432 aa10.65□□□□□ -0.71
SYNE1-217ENST00000466159 PAPPAQ13219 1627 aa10.64□□□□□ -0.71
SYNE1-217ENST00000466159 RFX7Q2KHR2 1363 aa10.64□□□□□ -0.71
SYNE1-217ENST00000466159 KRT32Q14532 448 aa10.64□□□□□ -0.71
SYNE1-217ENST00000466159 NAP1L5Q96NT1 182 aaPredicted RBP10.64□□□□□ -0.71
SYNE1-217ENST00000466159 U3KPZ7 1027 aaPredicted RBP10.64□□□□□ -0.71
SYNE1-217ENST00000466159 TNS2Q63HR2 1409 aa10.64□□□□□ -0.71
SYNE1-217ENST00000466159 A0A1B0GUL7 405 aa10.64□□□□□ -0.71
SYNE1-217ENST00000466159 CCDC85AQ96PX6 553 aaPredicted RBP10.64□□□□□ -0.71
SYNE1-217ENST00000466159 LRRC2Q9BYS8 371 aa10.64□□□□□ -0.71
SYNE1-217ENST00000466159 GPR108Q9NPR9 543 aa10.64□□□□□ -0.71
SYNE1-217ENST00000466159 TMOD3Q9NYL9 352 aa10.64□□□□□ -0.71
SYNE1-217ENST00000466159 ASAP1Q9ULH1 1129 aa10.64□□□□□ -0.71
SYNE1-217ENST00000466159 Q6ZUG5 572 aa10.63□□□□□ -0.71
SYNE1-217ENST00000466159 STOX1Q6ZVD7 989 aa10.63□□□□□ -0.71
SYNE1-217ENST00000466159 ISCA1Q9BUE6 129 aa10.63□□□□□ -0.71
SYNE1-217ENST00000466159 ABCA3Q99758 1704 aa10.63□□□□□ -0.71
SYNE1-217ENST00000466159 SH3TC1Q8TE82 1336 aa10.63□□□□□ -0.71
SYNE1-217ENST00000466159 MSNP26038 577 aaKnown RBP10.63□□□□□ -0.71
Retrieved 100 of 20,778 RNA–protein pairs in 31.5 ms