RNA–Protein interactions for RNA: ENST00000460593.1

CPSF3-202, Transcript of cleavage and polyadenylation specific factor 3, humanhuman

TSL 1 (best) BASIC

Gene CPSF3, Length 3,157 nt, Biotype protein coding, Subcellular localisation Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF3-202ENST00000460593 PPP1R13BQ96KQ4 1090 aa13.74□□□□□ -0.21
CPSF3-202ENST00000460593 SIL1Q9H173 461 aa13.74□□□□□ -0.21
CPSF3-202ENST00000460593 EPB41L2O43491 1005 aaKnown RBP13.74□□□□□ -0.21
CPSF3-202ENST00000460593 H2AFXP16104 143 aaPredicted RBP13.74□□□□□ -0.21
CPSF3-202ENST00000460593 PDCP20941 246 aa13.74□□□□□ -0.21
CPSF3-202ENST00000460593 RESTQ13127 1097 aa13.74□□□□□ -0.21
CPSF3-202ENST00000460593 NUTM2GQ5VZR2 741 aa13.74□□□□□ -0.21
CPSF3-202ENST00000460593 CLASRPQ8N2M8 674 aaKnown RBP13.74□□□□□ -0.21
CPSF3-202ENST00000460593 MRFAP1L1Q96HT8 127 aa13.74□□□□□ -0.21
CPSF3-202ENST00000460593 SEC62Q99442 399 aaKnown RBP13.74□□□□□ -0.21
CPSF3-202ENST00000460593 TTC21BQ7Z4L5 1316 aa13.74□□□□□ -0.21
CPSF3-202ENST00000460593 CDC25BP30305 580 aa13.73□□□□□ -0.21
CPSF3-202ENST00000460593 RAD51AP2Q09MP3 1159 aa13.73□□□□□ -0.21
CPSF3-202ENST00000460593 BMS1Q14692 1282 aaKnown RBP13.73□□□□□ -0.21
CPSF3-202ENST00000460593 USHBP1Q8N6Y0 703 aa13.73□□□□□ -0.21
CPSF3-202ENST00000460593 IL17REQ8NFR9 667 aa13.73□□□□□ -0.21
CPSF3-202ENST00000460593 CCDC34Q96HJ3 373 aa13.73□□□□□ -0.21
CPSF3-202ENST00000460593 TM6SF1Q9BZW5 370 aa13.73□□□□□ -0.21
CPSF3-202ENST00000460593 ECHDC1Q9NTX5 307 aa13.73□□□□□ -0.21
CPSF3-202ENST00000460593 HOMER1Q86YM7 354 aa13.73□□□□□ -0.21
CPSF3-202ENST00000460593 TULP2O00295 520 aa13.73□□□□□ -0.21
CPSF3-202ENST00000460593 RPS6KB1P23443 525 aa13.73□□□□□ -0.21
CPSF3-202ENST00000460593 STX1AQ16623 288 aa13.73□□□□□ -0.21
CPSF3-202ENST00000460593 ARMCX5Q6P1M9 558 aa13.73□□□□□ -0.21
CPSF3-202ENST00000460593 NFATC2IPQ8NCF5 419 aa13.73□□□□□ -0.21
CPSF3-202ENST00000460593 ZKSCAN7Q9P0L1 754 aaPredicted RBP13.73□□□□□ -0.21
CPSF3-202ENST00000460593 CHPF2Q9P2E5 772 aa13.73□□□□□ -0.21
CPSF3-202ENST00000460593 DNAI1Q9UI46 699 aa13.73□□□□□ -0.21
CPSF3-202ENST00000460593 METP08581 1390 aa13.73□□□□□ -0.21
CPSF3-202ENST00000460593 KLHDC4Q8TBB5 520 aa13.72□□□□□ -0.21
CPSF3-202ENST00000460593 MAP4K1Q92918 833 aa13.72□□□□□ -0.21
CPSF3-202ENST00000460593 CCDC9Q9Y3X0 531 aaKnown RBP13.72□□□□□ -0.21
CPSF3-202ENST00000460593 ACEP12821 1306 aa13.72□□□□□ -0.21
CPSF3-202ENST00000460593 FANCGO15287 622 aa13.72□□□□□ -0.21
CPSF3-202ENST00000460593 KCNQ3O43525 872 aa13.72□□□□□ -0.21
CPSF3-202ENST00000460593 CCDC129Q6ZRS4 1044 aa13.72□□□□□ -0.21
CPSF3-202ENST00000460593 SMARCE1Q969G3 411 aa13.72□□□□□ -0.21
CPSF3-202ENST00000460593 FSD1Q9BTV5 496 aa13.72□□□□□ -0.21
CPSF3-202ENST00000460593 XPO4Q9C0E2 1151 aaKnown RBP13.72□□□□□ -0.21
CPSF3-202ENST00000460593 FEZ2Q9UHY8 353 aaPredicted RBP13.72□□□□□ -0.21
CPSF3-202ENST00000460593 SARM1Q6SZW1 724 aa13.71□□□□□ -0.21
CPSF3-202ENST00000460593 IFNKQ9P0W0 207 aa13.71□□□□□ -0.21
CPSF3-202ENST00000460593 TRIM66O15016 1216 aa13.71□□□□□ -0.21
CPSF3-202ENST00000460593 USP28Q96RU2 1077 aa13.71□□□□□ -0.21
CPSF3-202ENST00000460593 DNAJC2Q99543 621 aaKnown RBP13.71□□□□□ -0.21
CPSF3-202ENST00000460593 LCMT1Q9UIC8 334 aa13.71□□□□□ -0.21
CPSF3-202ENST00000460593 UCHL5Q9Y5K5 329 aaKnown RBP eCLIP13.71□□□□□ -0.21
CPSF3-202ENST00000460593 TMEM131LA2VDJ0 1609 aa13.71□□□□□ -0.21
CPSF3-202ENST00000460593 A0A1B0GVL5 298 aa13.7□□□□□ -0.22
CPSF3-202ENST00000460593 CCT2P78371 535 aaKnown RBP13.7□□□□□ -0.22
CPSF3-202ENST00000460593 MLECQ14165 292 aa13.7□□□□□ -0.22
CPSF3-202ENST00000460593 DPCR1Q3MIW9 517 aa13.7□□□□□ -0.22
CPSF3-202ENST00000460593 KRBA2Q6ZNG9 492 aa13.7□□□□□ -0.22
CPSF3-202ENST00000460593 FSIP1Q8NA03 581 aa13.7□□□□□ -0.22
CPSF3-202ENST00000460593 KCNB2Q92953 911 aa13.7□□□□□ -0.22
CPSF3-202ENST00000460593 SASH3O75995 380 aa13.7□□□□□ -0.22
CPSF3-202ENST00000460593 ME1P48163 572 aa13.7□□□□□ -0.22
CPSF3-202ENST00000460593 AMPHP49418 695 aa13.7□□□□□ -0.22
CPSF3-202ENST00000460593 CWF19L2Q2TBE0 894 aaKnown RBP13.7□□□□□ -0.22
CPSF3-202ENST00000460593 SLFNL1Q499Z3 407 aa13.7□□□□□ -0.22
CPSF3-202ENST00000460593 Q6ZUG5 572 aa13.7□□□□□ -0.22
CPSF3-202ENST00000460593 EAF2Q96CJ1 260 aaPredicted RBP13.7□□□□□ -0.22
CPSF3-202ENST00000460593 MLH3Q9UHC1 1453 aa13.69□□□□□ -0.22
CPSF3-202ENST00000460593 URI1O94763 535 aaPredicted RBP13.69□□□□□ -0.22
CPSF3-202ENST00000460593 PSMA5P28066 241 aa13.69□□□□□ -0.22
CPSF3-202ENST00000460593 CARD6Q9BX69 1037 aa13.69□□□□□ -0.22
CPSF3-202ENST00000460593 XRN1Q8IZH2 1706 aaKnown RBP13.69□□□□□ -0.22
CPSF3-202ENST00000460593 MAP3K5Q99683 1374 aa13.69□□□□□ -0.22
CPSF3-202ENST00000460593 GNAT3A8MTJ3 354 aa13.69□□□□□ -0.22
CPSF3-202ENST00000460593 NEMFO60524 1076 aa13.69□□□□□ -0.22
CPSF3-202ENST00000460593 KINO60870 393 aaKnown RBP13.69□□□□□ -0.22
CPSF3-202ENST00000460593 ADD1P35611 737 aaKnown RBP13.69□□□□□ -0.22
CPSF3-202ENST00000460593 BEND3Q5T5X7 828 aa13.69□□□□□ -0.22
CPSF3-202ENST00000460593 CCDC73Q6ZRK6 1079 aa13.69□□□□□ -0.22
CPSF3-202ENST00000460593 EVI5LQ96CN4 794 aa13.69□□□□□ -0.22
CPSF3-202ENST00000460593 NCOA5Q9HCD5 579 aaKnown RBP13.69□□□□□ -0.22
CPSF3-202ENST00000460593 TTC41PQ6P2S7 1318 aa13.69□□□□□ -0.22
CPSF3-202ENST00000460593 OTUD7BQ6GQQ9 843 aa13.69□□□□□ -0.22
CPSF3-202ENST00000460593 DNAAF4Q8WXU2 420 aa13.69□□□□□ -0.22
CPSF3-202ENST00000460593 L2HGDHQ9H9P8 463 aa13.69□□□□□ -0.22
CPSF3-202ENST00000460593 SCRN1Q12765 414 aa13.68□□□□□ -0.22
CPSF3-202ENST00000460593 CCDC93Q567U6 631 aa13.68□□□□□ -0.22
CPSF3-202ENST00000460593 TMCO3Q6UWJ1 677 aa13.68□□□□□ -0.22
CPSF3-202ENST00000460593 C10orf67Q8IYJ2 551 aa13.68□□□□□ -0.22
CPSF3-202ENST00000460593 UBXN4Q92575 508 aa13.68□□□□□ -0.22
CPSF3-202ENST00000460593 PEAK1Q9H792 1746 aa13.68□□□□□ -0.22
CPSF3-202ENST00000460593 CEP170BQ9Y4F5 1589 aaPredicted RBP13.68□□□□□ -0.22
CPSF3-202ENST00000460593 NPHP4O75161 1426 aaPredicted RBP13.68□□□□□ -0.22
CPSF3-202ENST00000460593 SDF4Q9BRK5 362 aa13.68□□□□□ -0.22
CPSF3-202ENST00000460593 ORC3Q9UBD5 711 aaPredicted RBP13.68□□□□□ -0.22
CPSF3-202ENST00000460593 ARHGEF10O15013 1369 aa13.68□□□□□ -0.22
CPSF3-202ENST00000460593 DLC1Q96QB1 1528 aa13.67□□□□□ -0.22
CPSF3-202ENST00000460593 LMOD1P29536 600 aaPredicted RBP13.67□□□□□ -0.22
CPSF3-202ENST00000460593 OAS2P29728 719 aaKnown RBP13.67□□□□□ -0.22
CPSF3-202ENST00000460593 HSP90AA4PQ58FG1 418 aa13.67□□□□□ -0.22
CPSF3-202ENST00000460593 CHST3Q7LGC8 479 aa13.67□□□□□ -0.22
CPSF3-202ENST00000460593 CEP57L1Q8IYX8 460 aa13.67□□□□□ -0.22
CPSF3-202ENST00000460593 HTATSF1O43719 755 aaKnown RBP13.67□□□□□ -0.22
CPSF3-202ENST00000460593 ATP1A3P13637 1013 aa13.67□□□□□ -0.22
CPSF3-202ENST00000460593 SFPQP23246 707 aaKnown RBP eCLIP13.67□□□□□ -0.22
Retrieved 100 of 20,778 RNA–protein pairs in 17 ms