RNA–Protein interactions for RNA: ENST00000460573.5

C9orf3-209, Transcript of chromosome 9 open reading frame 3, humanhuman

TSL 5

Gene C9orf3, Length 443 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
C9orf3-209ENST00000460573 SF3B3Q15393 1217 aaKnown RBP28.33■■■□□ 2.13
C9orf3-209ENST00000460573 RPGRQ92834 1020 aaKnown RBP28.33■■■□□ 2.13
C9orf3-209ENST00000460573 RBM17Q96I25 401 aaKnown RBP28.33■■■□□ 2.13
C9orf3-209ENST00000460573 PLA2G12BQ9BX93 195 aa28.33■■■□□ 2.13
C9orf3-209ENST00000460573 COL11A2P13942 1736 aaPredicted RBP28.32■■■□□ 2.12
C9orf3-209ENST00000460573 DDX60Q8IY21 1712 aaKnown RBP28.32■■■□□ 2.12
C9orf3-209ENST00000460573 LAMB2P55268 1798 aa28.32■■■□□ 2.12
C9orf3-209ENST00000460573 KIF3CO14782 793 aa28.32■■■□□ 2.12
C9orf3-209ENST00000460573 LMNB1P20700 586 aa28.32■■■□□ 2.12
C9orf3-209ENST00000460573 HOXA10P31260 410 aaPredicted RBP28.32■■■□□ 2.12
C9orf3-209ENST00000460573 FTSJ3Q8IY81 847 aaKnown RBP28.32■■■□□ 2.12
C9orf3-209ENST00000460573 JARID2Q92833 1246 aaPredicted RBP28.32■■■□□ 2.12
C9orf3-209ENST00000460573 UTYO14607 1347 aa28.32■■■□□ 2.12
C9orf3-209ENST00000460573 CCDC88AQ3V6T2 1871 aa28.32■■■□□ 2.12
C9orf3-209ENST00000460573 DZIP1LQ8IYY4 767 aaKnown RBP28.31■■■□□ 2.12
C9orf3-209ENST00000460573 CLUAP1Q96AJ1 413 aa28.31■■■□□ 2.12
C9orf3-209ENST00000460573 C21orf2O43822 256 aa28.3■■■□□ 2.12
C9orf3-209ENST00000460573 C3orf67Q6ZVT6 689 aa28.3■■■□□ 2.12
C9orf3-209ENST00000460573 NMRK2Q9NPI5 230 aa28.3■■■□□ 2.12
C9orf3-209ENST00000460573 CRAMP1Q96RY5 1269 aa28.29■■■□□ 2.12
C9orf3-209ENST00000460573 USP44Q9H0E7 712 aa28.29■■■□□ 2.12
C9orf3-209ENST00000460573 CCDC152Q4G0S7 254 aa28.28■■■□□ 2.12
C9orf3-209ENST00000460573 HDAC5Q9UQL6 1122 aa28.28■■■□□ 2.12
C9orf3-209ENST00000460573 TOMM70O94826 608 aa28.27■■■□□ 2.12
C9orf3-209ENST00000460573 CTSWP56202 376 aa28.27■■■□□ 2.12
C9orf3-209ENST00000460573 DDX46Q7L014 1031 aaKnown RBP28.27■■■□□ 2.12
C9orf3-209ENST00000460573 TNNQ9UQP3 1299 aa28.27■■■□□ 2.12
C9orf3-209ENST00000460573 ZC3H4Q9UPT8 1303 aaKnown RBP28.26■■■□□ 2.11
C9orf3-209ENST00000460573 NBPF7P0C2Y1 421 aaPredicted RBP28.26■■■□□ 2.11
C9orf3-209ENST00000460573 HSPA6P17066 643 aa28.26■■■□□ 2.11
C9orf3-209ENST00000460573 SOGA3Q5TF21 947 aa28.26■■■□□ 2.11
C9orf3-209ENST00000460573 PRPF40BQ6NWY9 871 aaKnown RBP28.25■■■□□ 2.11
C9orf3-209ENST00000460573 TMEM57Q8N5G2 664 aa28.25■■■□□ 2.11
C9orf3-209ENST00000460573 TTLL11Q8NHH1 800 aa28.25■■■□□ 2.11
C9orf3-209ENST00000460573 TIAM2Q8IVF5 1701 aa28.25■■■□□ 2.11
C9orf3-209ENST00000460573 CSF1RP07333 972 aa28.23■■■□□ 2.11
C9orf3-209ENST00000460573 GNAI3P08754 354 aa28.23■■■□□ 2.11
C9orf3-209ENST00000460573 TAOK3Q9H2K8 898 aa28.23■■■□□ 2.11
C9orf3-209ENST00000460573 RRAGCQ9HB90 399 aa28.23■■■□□ 2.11
C9orf3-209ENST00000460573 NFKBIEO00221 500 aa28.22■■■□□ 2.11
C9orf3-209ENST00000460573 BBOX1O75936 387 aa28.22■■■□□ 2.11
C9orf3-209ENST00000460573 UBTFL1P0CB47 393 aaPredicted RBP28.22■■■□□ 2.11
C9orf3-209ENST00000460573 PDE3AQ14432 1141 aa28.22■■■□□ 2.11
C9orf3-209ENST00000460573 SLX4Q8IY92 1834 aa28.22■■■□□ 2.11
C9orf3-209ENST00000460573 RTL9Q8NET4 1388 aa28.22■■■□□ 2.11
C9orf3-209ENST00000460573 PLIN1O60240 522 aa28.21■■■□□ 2.11
C9orf3-209ENST00000460573 RLBP1P12271 317 aa28.21■■■□□ 2.11
C9orf3-209ENST00000460573 FOXO4P98177 505 aa28.21■■■□□ 2.11
C9orf3-209ENST00000460573 GRAPQ13588 217 aa28.21■■■□□ 2.11
C9orf3-209ENST00000460573 GRAPLQ8TC17 118 aaPredicted RBP28.21■■■□□ 2.11
C9orf3-209ENST00000460573 SUCLG2Q96I99 432 aa28.21■■■□□ 2.11
C9orf3-209ENST00000460573 MYH3P11055 1940 aa28.21■■■□□ 2.11
C9orf3-209ENST00000460573 DPY19L2Q6NUT2 758 aa28.2■■■□□ 2.1
C9orf3-209ENST00000460573 TMC4Q7Z404 712 aa28.2■■■□□ 2.1
C9orf3-209ENST00000460573 ITPRIPQ8IWB1 547 aa28.2■■■□□ 2.1
C9orf3-209ENST00000460573 FER1L6Q2WGJ9 1857 aa28.2■■■□□ 2.1
C9orf3-209ENST00000460573 CCDC93Q567U6 631 aa28.18■■■□□ 2.1
C9orf3-209ENST00000460573 PANK1Q8TE04 598 aa28.18■■■□□ 2.1
C9orf3-209ENST00000460573 KAZALD1Q96I82 304 aa28.18■■■□□ 2.1
C9orf3-209ENST00000460573 CDC5LQ99459 802 aaKnown RBP28.18■■■□□ 2.1
C9orf3-209ENST00000460573 MEIS3Q99687 375 aa28.18■■■□□ 2.1
C9orf3-209ENST00000460573 EPHA10Q5JZY3 1008 aa28.17■■■□□ 2.1
C9orf3-209ENST00000460573 CC2D2BQ6DHV5 1058 aa28.17■■■□□ 2.1
C9orf3-209ENST00000460573 LMBR1LQ6UX01 489 aa28.17■■■□□ 2.1
C9orf3-209ENST00000460573 RBM46Q8TBY0 533 aaKnown RBP28.17■■■□□ 2.1
C9orf3-209ENST00000460573 C7orf43Q8WVR3 580 aa28.17■■■□□ 2.1
C9orf3-209ENST00000460573 GREM2Q9H772 168 aa28.17■■■□□ 2.1
C9orf3-209ENST00000460573 DICER1Q9UPY3 1922 aaKnown RBP28.16■■■□□ 2.1
C9orf3-209ENST00000460573 GLTPD2A6NH11 291 aa28.16■■■□□ 2.1
C9orf3-209ENST00000460573 PPEF1O14829 653 aaPredicted RBP28.16■■■□□ 2.1
C9orf3-209ENST00000460573 RRP1P56182 461 aaKnown RBP28.16■■■□□ 2.1
C9orf3-209ENST00000460573 RPS8P62241 208 aaKnown RBP28.16■■■□□ 2.1
C9orf3-209ENST00000460573 RABL6Q3YEC7 729 aaPredicted RBP28.16■■■□□ 2.1
C9orf3-209ENST00000460573 GRIPAP1Q4V328 841 aa28.16■■■□□ 2.1
C9orf3-209ENST00000460573 CCDC85AQ96PX6 553 aaPredicted RBP28.16■■■□□ 2.1
C9orf3-209ENST00000460573 TMX4Q9H1E5 349 aaPredicted RBP28.16■■■□□ 2.1
C9orf3-209ENST00000460573 CHMP4BQ9H444 224 aaKnown RBP28.16■■■□□ 2.1
C9orf3-209ENST00000460573 BICC1Q9H694 974 aaKnown RBP28.16■■■□□ 2.1
C9orf3-209ENST00000460573 SEC31BQ9NQW1 1179 aa28.16■■■□□ 2.1
C9orf3-209ENST00000460573 MVPQ14764 893 aaKnown RBP28.15■■■□□ 2.1
C9orf3-209ENST00000460573 ITGA6P23229 1130 aa28.14■■■□□ 2.1
C9orf3-209ENST00000460573 APLP1P51693 650 aa28.14■■■□□ 2.1
C9orf3-209ENST00000460573 IFIT5Q13325 482 aaKnown RBP28.14■■■□□ 2.1
C9orf3-209ENST00000460573 ANKRD18AQ8IVF6 992 aa28.14■■■□□ 2.1
C9orf3-209ENST00000460573 SP8Q8IXZ3 490 aa28.14■■■□□ 2.1
C9orf3-209ENST00000460573 CELF1Q92879 486 aaKnown RBP28.14■■■□□ 2.1
C9orf3-209ENST00000460573 DDX19BQ9UMR2 479 aa28.14■■■□□ 2.1
C9orf3-209ENST00000460573 ATP6V0A2Q9Y487 856 aa28.14■■■□□ 2.1
C9orf3-209ENST00000460573 LTBP3Q9NS15 1303 aa28.14■■■□□ 2.09
C9orf3-209ENST00000460573 ANKRD18BA2A2Z9 1011 aa28.13■■■□□ 2.09
C9orf3-209ENST00000460573 ZBTB7BO15156 539 aaPredicted RBP28.13■■■□□ 2.09
C9orf3-209ENST00000460573 PRELPP51888 382 aa28.13■■■□□ 2.09
C9orf3-209ENST00000460573 CCDC57Q2TAC2 916 aa28.13■■■□□ 2.09
C9orf3-209ENST00000460573 FAM161AQ3B820 660 aa28.13■■■□□ 2.09
C9orf3-209ENST00000460573 CHMP3Q9Y3E7 222 aa28.13■■■□□ 2.09
C9orf3-209ENST00000460573 GNAI2P04899 355 aa28.12■■■□□ 2.09
C9orf3-209ENST00000460573 VEGFAP15692 232 aaPredicted RBP28.12■■■□□ 2.09
C9orf3-209ENST00000460573 ANKRD44Q8N8A2 993 aa28.12■■■□□ 2.09
C9orf3-209ENST00000460573 IGHMBP2P38935 993 aaKnown RBP28.11■■■□□ 2.09
C9orf3-209ENST00000460573 RTKN2Q8IZC4 609 aa28.11■■■□□ 2.09
Retrieved 100 of 20,778 RNA–protein pairs in 49.8 ms