RNA–Protein interactions for RNA: ENST00000458034.1

RFX3-211, Transcript of regulatory factor X3, humanhuman

TSL 3

Gene RFX3, Length 814 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RFX3-211ENST00000458034 ATP5JP18859 108 aa13.06□□□□□ -0.32
RFX3-211ENST00000458034 SYT1P21579 422 aa13.06□□□□□ -0.32
RFX3-211ENST00000458034 GJB2P29033 226 aa13.06□□□□□ -0.32
RFX3-211ENST00000458034 CABP4P57796 275 aa13.06□□□□□ -0.32
RFX3-211ENST00000458034 BLOC1S2Q6QNY1 142 aa13.06□□□□□ -0.32
RFX3-211ENST00000458034 PDZRN4Q6ZMN7 1036 aaPredicted RBP13.06□□□□□ -0.32
RFX3-211ENST00000458034 CCDC83Q8IWF9 413 aa13.06□□□□□ -0.32
RFX3-211ENST00000458034 NFATC2IPQ8NCF5 419 aa13.06□□□□□ -0.32
RFX3-211ENST00000458034 STRCP1A6NGW2 1772 aa13.06□□□□□ -0.32
RFX3-211ENST00000458034 UBR2Q8IWV8 1755 aa13.06□□□□□ -0.32
RFX3-211ENST00000458034 TMEM94Q12767 1356 aa13.06□□□□□ -0.32
RFX3-211ENST00000458034 SLC27A2O14975 620 aa13.05□□□□□ -0.32
RFX3-211ENST00000458034 CD44P16070 742 aaKnown RBP13.05□□□□□ -0.32
RFX3-211ENST00000458034 RABL6Q3YEC7 729 aaPredicted RBP13.05□□□□□ -0.32
RFX3-211ENST00000458034 PLBD2Q8NHP8 589 aa13.05□□□□□ -0.32
RFX3-211ENST00000458034 ZNF496Q96IT1 587 aaPredicted RBP13.05□□□□□ -0.32
RFX3-211ENST00000458034 SIL1Q9H173 461 aa13.05□□□□□ -0.32
RFX3-211ENST00000458034 BOLA2Q9H3K6 86 aa13.05□□□□□ -0.32
RFX3-211ENST00000458034 NSFL1CQ9UNZ2 370 aaKnown RBP13.05□□□□□ -0.32
RFX3-211ENST00000458034 PAPPAQ13219 1627 aa13.05□□□□□ -0.32
RFX3-211ENST00000458034 SPEF2Q9C093 1822 aa13.04□□□□□ -0.32
RFX3-211ENST00000458034 TPM2P07951 284 aa13.04□□□□□ -0.32
RFX3-211ENST00000458034 TSGA10IPQ3SY00 556 aa13.04□□□□□ -0.32
RFX3-211ENST00000458034 FAM227BQ96M60 508 aa13.04□□□□□ -0.32
RFX3-211ENST00000458034 NOL7Q9UMY1 257 aaKnown RBP13.04□□□□□ -0.32
RFX3-211ENST00000458034 CNPY2Q9Y2B0 182 aa13.04□□□□□ -0.32
RFX3-211ENST00000458034 GLI3P10071 1580 aa13.03□□□□□ -0.32
RFX3-211ENST00000458034 RPS6KB1P23443 525 aa13.03□□□□□ -0.32
RFX3-211ENST00000458034 ADCK5Q3MIX3 580 aa13.03□□□□□ -0.32
RFX3-211ENST00000458034 TNNI3KQ59H18 835 aa13.03□□□□□ -0.32
RFX3-211ENST00000458034 CHAMP1Q96JM3 812 aa13.03□□□□□ -0.32
RFX3-211ENST00000458034 MTMR6Q9Y217 621 aa13.03□□□□□ -0.32
RFX3-211ENST00000458034 FPGT-TNNI3KV9GXZ4 949 aa13.03□□□□□ -0.32
RFX3-211ENST00000458034 SPATA31A3Q5VYP0 1347 aa13.03□□□□□ -0.32
RFX3-211ENST00000458034 A0A0D9SFI3 127 aa13.02□□□□□ -0.33
RFX3-211ENST00000458034 GADD45BO75293 160 aaPredicted RBP13.02□□□□□ -0.33
RFX3-211ENST00000458034 LARGE1O95461 756 aa13.02□□□□□ -0.33
RFX3-211ENST00000458034 RFX5P48382 616 aaPredicted RBP13.02□□□□□ -0.33
RFX3-211ENST00000458034 LRP10Q7Z4F1 713 aa13.02□□□□□ -0.33
RFX3-211ENST00000458034 GDPD2Q9HCC8 539 aa13.02□□□□□ -0.33
RFX3-211ENST00000458034 TLR7Q9NYK1 1049 aaKnown RBP13.02□□□□□ -0.33
RFX3-211ENST00000458034 PCDH11XQ9BZA7 1347 aa13.02□□□□□ -0.33
RFX3-211ENST00000458034 PCDH11YQ9BZA8 1340 aa13.02□□□□□ -0.33
RFX3-211ENST00000458034 TJP1Q07157 1748 aa13.02□□□□□ -0.33
RFX3-211ENST00000458034 A0A087WZG4 1122 aa13.01□□□□□ -0.33
RFX3-211ENST00000458034 VPS37CA5D8V6 355 aaPredicted RBP13.01□□□□□ -0.33
RFX3-211ENST00000458034 CYP27B1O15528 508 aa13.01□□□□□ -0.33
RFX3-211ENST00000458034 ZNF500O60304 480 aaPredicted RBP13.01□□□□□ -0.33
RFX3-211ENST00000458034 PTMAP06454 111 aaKnown RBP13.01□□□□□ -0.33
RFX3-211ENST00000458034 CPA1P15085 419 aa13.01□□□□□ -0.33
RFX3-211ENST00000458034 TERF1P54274 439 aa13.01□□□□□ -0.33
RFX3-211ENST00000458034 KRT85P78386 507 aa13.01□□□□□ -0.33
RFX3-211ENST00000458034 PTPN12Q05209 780 aaKnown RBP13.01□□□□□ -0.33
RFX3-211ENST00000458034 ME3Q16798 604 aa13.01□□□□□ -0.33
RFX3-211ENST00000458034 FOXD4L6Q3SYB3 417 aaPredicted RBP13.01□□□□□ -0.33
RFX3-211ENST00000458034 EPHA10Q5JZY3 1008 aa13.01□□□□□ -0.33
RFX3-211ENST00000458034 FOXD4L3Q6VB84 417 aaPredicted RBP13.01□□□□□ -0.33
RFX3-211ENST00000458034 UBE3BQ7Z3V4 1068 aa13.01□□□□□ -0.33
RFX3-211ENST00000458034 CHMP4CQ96CF2 233 aa13.01□□□□□ -0.33
RFX3-211ENST00000458034 GPR108Q9NPR9 543 aa13.01□□□□□ -0.33
RFX3-211ENST00000458034 ZKSCAN5Q9Y2L8 839 aa13.01□□□□□ -0.33
RFX3-211ENST00000458034 USP16Q9Y5T5 823 aa13.01□□□□□ -0.33
RFX3-211ENST00000458034 ERVV-2B6SEH9 535 aa13□□□□□ -0.33
RFX3-211ENST00000458034 FIBPO43427 364 aa13□□□□□ -0.33
RFX3-211ENST00000458034 OFD1O75665 1012 aa13□□□□□ -0.33
RFX3-211ENST00000458034 TFCP2Q12800 502 aa13□□□□□ -0.33
RFX3-211ENST00000458034 USPL1Q5W0Q7 1092 aa13□□□□□ -0.33
RFX3-211ENST00000458034 LARP1BQ659C4 914 aaKnown RBP13□□□□□ -0.33
RFX3-211ENST00000458034 HAUS7Q99871 368 aa13□□□□□ -0.33
RFX3-211ENST00000458034 CWC25Q9NXE8 425 aaPredicted RBP13□□□□□ -0.33
RFX3-211ENST00000458034 FARP1Q9Y4F1 1045 aaPredicted RBP13□□□□□ -0.33
RFX3-211ENST00000458034 LAMA4Q16363 1823 aa12.99□□□□□ -0.33
RFX3-211ENST00000458034 PALLDQ8WX93 1383 aa12.99□□□□□ -0.33
RFX3-211ENST00000458034 ELP1O95163 1332 aa12.99□□□□□ -0.33
RFX3-211ENST00000458034 SH3TC1Q8TE82 1336 aa12.99□□□□□ -0.33
RFX3-211ENST00000458034 TAF5LO75529 589 aa12.99□□□□□ -0.33
RFX3-211ENST00000458034 HMGB1P09429 215 aaKnown RBP12.99□□□□□ -0.33
RFX3-211ENST00000458034 MCMDC2Q4G0Z9 681 aa12.99□□□□□ -0.33
RFX3-211ENST00000458034 RNF214Q8ND24 703 aa12.99□□□□□ -0.33
RFX3-211ENST00000458034 LARP6Q9BRS8 491 aaKnown RBP12.99□□□□□ -0.33
RFX3-211ENST00000458034 DBNLQ9UJU6 430 aaKnown RBP12.99□□□□□ -0.33
RFX3-211ENST00000458034 TPCN1Q9ULQ1 816 aa12.99□□□□□ -0.33
RFX3-211ENST00000458034 MYH15Q9Y2K3 1946 aa12.99□□□□□ -0.33
RFX3-211ENST00000458034 XIRP1Q702N8 1843 aaKnown RBP12.98□□□□□ -0.33
RFX3-211ENST00000458034 H7C1W4 665 aa12.98□□□□□ -0.33
RFX3-211ENST00000458034 IL15P40933 162 aaPredicted RBP12.98□□□□□ -0.33
RFX3-211ENST00000458034 CASP7P55210 303 aa12.98□□□□□ -0.33
RFX3-211ENST00000458034 CHRNA2Q15822 529 aa12.98□□□□□ -0.33
RFX3-211ENST00000458034 LRRFIP1Q32MZ4 808 aaKnown RBP12.98□□□□□ -0.33
RFX3-211ENST00000458034 KLHDC4Q8TBB5 520 aa12.98□□□□□ -0.33
RFX3-211ENST00000458034 ZCRB1Q8TBF4 217 aaKnown RBP12.98□□□□□ -0.33
RFX3-211ENST00000458034 NEK1Q96PY6 1258 aa12.98□□□□□ -0.33
RFX3-211ENST00000458034 HELLSQ9NRZ9 838 aa12.98□□□□□ -0.33
RFX3-211ENST00000458034 ABCA3Q99758 1704 aa12.98□□□□□ -0.33
RFX3-211ENST00000458034 WDR17Q8IZU2 1322 aa12.97□□□□□ -0.33
RFX3-211ENST00000458034 DNM1Q05193 864 aaKnown RBP12.97□□□□□ -0.33
RFX3-211ENST00000458034 ST3GAL1Q11201 340 aa12.97□□□□□ -0.33
RFX3-211ENST00000458034 NECAB1Q8N987 351 aa12.97□□□□□ -0.33
RFX3-211ENST00000458034 KBTBD3Q8NAB2 608 aa12.97□□□□□ -0.33
RFX3-211ENST00000458034 CCDC191Q8NCU4 936 aa12.97□□□□□ -0.33
Retrieved 100 of 20,778 RNA–protein pairs in 33.9 ms