RNA–Protein interactions for RNA: ENST00000455727.6

LDLR-202, Transcript of low density lipoprotein receptor, humanhuman

TSL 2 BASIC

Gene LDLR, Length 2,333 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-202ENST00000455727 DBNDD2Q9BQY9 259 aa18.05■□□□□ 0.48
LDLR-202ENST00000455727 TEX13AQ9BXU3 409 aaPredicted RBP18.05■□□□□ 0.48
LDLR-202ENST00000455727 STX6O43752 255 aa18.04■□□□□ 0.48
LDLR-202ENST00000455727 TAF5LO75529 589 aa18.04■□□□□ 0.48
LDLR-202ENST00000455727 SYT1P21579 422 aa18.04■□□□□ 0.48
LDLR-202ENST00000455727 VSIG10Q8N0Z9 540 aa18.04■□□□□ 0.48
LDLR-202ENST00000455727 TMEM63CQ9P1W3 806 aa18.04■□□□□ 0.48
LDLR-202ENST00000455727 IL15P40933 162 aaPredicted RBP18.04■□□□□ 0.48
LDLR-202ENST00000455727 ANKRD1Q15327 319 aa18.04■□□□□ 0.48
LDLR-202ENST00000455727 LARGE1O95461 756 aa18.03■□□□□ 0.48
LDLR-202ENST00000455727 TRIM28Q13263 835 aaKnown RBP18.03■□□□□ 0.48
LDLR-202ENST00000455727 ISCA1Q9BUE6 129 aa18.03■□□□□ 0.48
LDLR-202ENST00000455727 TMOD3Q9NYL9 352 aa18.03■□□□□ 0.48
LDLR-202ENST00000455727 CIAO1O76071 339 aa18.03■□□□□ 0.48
LDLR-202ENST00000455727 ZNF589Q86UQ0 364 aaPredicted RBP18.03■□□□□ 0.48
LDLR-202ENST00000455727 PPP1R9BQ96SB3 815 aa18.03■□□□□ 0.48
LDLR-202ENST00000455727 ZBTB3Q9H5J0 574 aa18.03■□□□□ 0.48
LDLR-202ENST00000455727 ANO8Q9HCE9 1232 aaPredicted RBP18.03■□□□□ 0.48
LDLR-202ENST00000455727 ATP6V1DQ9Y5K8 247 aa18.03■□□□□ 0.48
LDLR-202ENST00000455727 CCDC173Q0VFZ6 552 aa18.02■□□□□ 0.48
LDLR-202ENST00000455727 KRT32Q14532 448 aa18.02■□□□□ 0.48
LDLR-202ENST00000455727 BLOC1S2Q6QNY1 142 aa18.02■□□□□ 0.48
LDLR-202ENST00000455727 LRSAM1Q6UWE0 723 aa18.02■□□□□ 0.48
LDLR-202ENST00000455727 EDC3Q96F86 508 aaKnown RBP18.02■□□□□ 0.48
LDLR-202ENST00000455727 LARP6Q9BRS8 491 aaKnown RBP18.02■□□□□ 0.48
LDLR-202ENST00000455727 RBM27Q9P2N5 1060 aaKnown RBP18.02■□□□□ 0.48
LDLR-202ENST00000455727 NSFL1CQ9UNZ2 370 aaKnown RBP18.02■□□□□ 0.48
LDLR-202ENST00000455727 ME3Q16798 604 aa18.01■□□□□ 0.47
LDLR-202ENST00000455727 CCDC83Q8IWF9 413 aa18.01■□□□□ 0.47
LDLR-202ENST00000455727 ANP32BQ92688 251 aaKnown RBP18.01■□□□□ 0.47
LDLR-202ENST00000455727 CHMP3Q9Y3E7 222 aa18.01■□□□□ 0.47
LDLR-202ENST00000455727 KDM4FA0A1W2PPD8 638 aa18.01■□□□□ 0.47
LDLR-202ENST00000455727 EYA2O00167 538 aa18.01■□□□□ 0.47
LDLR-202ENST00000455727 RPS6KB1P23443 525 aa18.01■□□□□ 0.47
LDLR-202ENST00000455727 TCIRG1Q13488 830 aa18.01■□□□□ 0.47
LDLR-202ENST00000455727 KBTBD3Q8NAB2 608 aa18.01■□□□□ 0.47
LDLR-202ENST00000455727 SYAP1Q96A49 352 aaPredicted RBP18.01■□□□□ 0.47
LDLR-202ENST00000455727 RRAGDQ9NQL2 400 aaPredicted RBP18.01■□□□□ 0.47
LDLR-202ENST00000455727 FBXO3Q9UK99 471 aa18.01■□□□□ 0.47
LDLR-202ENST00000455727 PALLDQ8WX93 1383 aa18.01■□□□□ 0.47
LDLR-202ENST00000455727 PRIM1P49642 420 aaKnown RBP18■□□□□ 0.47
LDLR-202ENST00000455727 MCMDC2Q4G0Z9 681 aa18■□□□□ 0.47
LDLR-202ENST00000455727 USP48Q86UV5 1035 aa18■□□□□ 0.47
LDLR-202ENST00000455727 TPCN1Q9ULQ1 816 aa18■□□□□ 0.47
LDLR-202ENST00000455727 ITGB4P16144 1822 aa18■□□□□ 0.47
LDLR-202ENST00000455727 SPEF2Q9C093 1822 aa18■□□□□ 0.47
LDLR-202ENST00000455727 F13A1P00488 732 aa18■□□□□ 0.47
LDLR-202ENST00000455727 GJB2P29033 226 aa18■□□□□ 0.47
LDLR-202ENST00000455727 U3KPZ7 1027 aaPredicted RBP18■□□□□ 0.47
LDLR-202ENST00000455727 ZNF609O15014 1411 aa18■□□□□ 0.47
LDLR-202ENST00000455727 SH3TC1Q8TE82 1336 aa17.99■□□□□ 0.47
LDLR-202ENST00000455727 DNAJC2Q99543 621 aaKnown RBP17.99■□□□□ 0.47
LDLR-202ENST00000455727 ST3GAL1Q11201 340 aa17.99■□□□□ 0.47
LDLR-202ENST00000455727 PIGBQ92521 554 aa17.98■□□□□ 0.47
LDLR-202ENST00000455727 TRIM44Q96DX7 344 aaPredicted RBP17.98■□□□□ 0.47
LDLR-202ENST00000455727 RBSNQ9H1K0 784 aa17.98■□□□□ 0.47
LDLR-202ENST00000455727 PPIL4Q8WUA2 492 aaKnown RBP eCLIP17.98■□□□□ 0.47
LDLR-202ENST00000455727 PLA2G12BQ9BX93 195 aa17.98■□□□□ 0.47
LDLR-202ENST00000455727 HELLSQ9NRZ9 838 aa17.98■□□□□ 0.47
LDLR-202ENST00000455727 MTMR6Q9Y217 621 aa17.98■□□□□ 0.47
LDLR-202ENST00000455727 COL14A1Q05707 1796 aaKnown RBP17.97■□□□□ 0.47
LDLR-202ENST00000455727 STARD3NLO95772 234 aa17.97■□□□□ 0.47
LDLR-202ENST00000455727 NEUROD6Q96NK8 337 aa17.97■□□□□ 0.47
LDLR-202ENST00000455727 PAG1Q9NWQ8 432 aa17.97■□□□□ 0.47
LDLR-202ENST00000455727 DISP2A7MBM2 1401 aa17.97■□□□□ 0.47
LDLR-202ENST00000455727 SYCE3A1L190 88 aa17.97■□□□□ 0.47
LDLR-202ENST00000455727 PCCAP05165 728 aaPredicted RBP17.97■□□□□ 0.47
LDLR-202ENST00000455727 TIMM10P62072 90 aa17.97■□□□□ 0.47
LDLR-202ENST00000455727 DDX46Q7L014 1031 aaKnown RBP17.97■□□□□ 0.47
LDLR-202ENST00000455727 PHF14O94880 888 aa17.96■□□□□ 0.47
LDLR-202ENST00000455727 TOB2Q14106 344 aaPredicted RBP17.96■□□□□ 0.47
LDLR-202ENST00000455727 LRRC24Q50LG9 513 aa17.96■□□□□ 0.47
LDLR-202ENST00000455727 KIF6Q6ZMV9 814 aa17.96■□□□□ 0.47
LDLR-202ENST00000455727 KLHL34Q8N239 644 aa17.96■□□□□ 0.47
LDLR-202ENST00000455727 BTG4Q9NY30 223 aa17.96■□□□□ 0.47
LDLR-202ENST00000455727 ASAP1Q9ULH1 1129 aa17.96■□□□□ 0.47
LDLR-202ENST00000455727 TAF6LQ9Y6J9 622 aa17.96■□□□□ 0.47
LDLR-202ENST00000455727 NDUFB9Q9Y6M9 179 aa17.96■□□□□ 0.47
LDLR-202ENST00000455727 LRP6O75581 1613 aa17.96■□□□□ 0.47
LDLR-202ENST00000455727 GADD45BO75293 160 aaPredicted RBP17.95■□□□□ 0.46
LDLR-202ENST00000455727 PDCP20941 246 aa17.95■□□□□ 0.46
LDLR-202ENST00000455727 CLCN1P35523 988 aa17.95■□□□□ 0.46
LDLR-202ENST00000455727 CSPP1Q1MSJ5 1256 aa17.95■□□□□ 0.46
LDLR-202ENST00000455727 DNAJC10Q8IXB1 793 aa17.95■□□□□ 0.46
LDLR-202ENST00000455727 GDPD2Q9HCC8 539 aa17.95■□□□□ 0.46
LDLR-202ENST00000455727 CCDC57Q2TAC2 916 aa17.95■□□□□ 0.46
LDLR-202ENST00000455727 FOXD4L6Q3SYB3 417 aaPredicted RBP17.95■□□□□ 0.46
LDLR-202ENST00000455727 FOXD4L3Q6VB84 417 aaPredicted RBP17.95■□□□□ 0.46
LDLR-202ENST00000455727 NECAB1Q8N987 351 aa17.95■□□□□ 0.46
LDLR-202ENST00000455727 NEK1Q96PY6 1258 aa17.95■□□□□ 0.46
LDLR-202ENST00000455727 CNPY2Q9Y2B0 182 aa17.95■□□□□ 0.46
LDLR-202ENST00000455727 A0A1B0GUL7 405 aa17.94■□□□□ 0.46
LDLR-202ENST00000455727 CSF1RP07333 972 aa17.94■□□□□ 0.46
LDLR-202ENST00000455727 UBE2HP62256 183 aa17.94■□□□□ 0.46
LDLR-202ENST00000455727 COL9A3Q14050 684 aaPredicted RBP17.94■□□□□ 0.46
LDLR-202ENST00000455727 ZNF594Q96JF6 807 aaPredicted RBP17.94■□□□□ 0.46
LDLR-202ENST00000455727 CEP126Q9P2H0 1117 aa17.94■□□□□ 0.46
LDLR-202ENST00000455727 PLCH1Q4KWH8 1693 aa17.94■□□□□ 0.46
LDLR-202ENST00000455727 ESPNB1AK53 854 aa17.94■□□□□ 0.46
LDLR-202ENST00000455727 ZBTB38Q8NAP3 1195 aaPredicted RBP17.94■□□□□ 0.46
Retrieved 100 of 20,778 RNA–protein pairs in 48 ms