RNA–Protein interactions for RNA: ENST00000454018.6

SYNE1-214, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 1 (best)

Gene SYNE1, Length 1,546 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-214ENST00000454018 TNRC6CQ9HCJ0 1690 aaKnown RBP11.11□□□□□ -0.63
SYNE1-214ENST00000454018 COL11A2P13942 1736 aaPredicted RBP11.1□□□□□ -0.63
SYNE1-214ENST00000454018 KIAA1551Q9HCM1 1747 aa11.1□□□□□ -0.63
SYNE1-214ENST00000454018 SPDYE16A6NNV3 312 aaPredicted RBP11.1□□□□□ -0.63
SYNE1-214ENST00000454018 ZBTB7AO95365 584 aa11.1□□□□□ -0.63
SYNE1-214ENST00000454018 TCIRG1Q13488 830 aa11.1□□□□□ -0.63
SYNE1-214ENST00000454018 NFIXQ14938 502 aa11.1□□□□□ -0.63
SYNE1-214ENST00000454018 PARP10Q53GL7 1025 aa11.1□□□□□ -0.63
SYNE1-214ENST00000454018 TBC1D9BQ66K14 1250 aa11.1□□□□□ -0.63
SYNE1-214ENST00000454018 MSL1Q68DK7 614 aa11.1□□□□□ -0.63
SYNE1-214ENST00000454018 ATF7IPQ6VMQ6 1270 aa11.1□□□□□ -0.63
SYNE1-214ENST00000454018 GOLGA6L2Q8N9W4 650 aaPredicted RBP11.1□□□□□ -0.63
SYNE1-214ENST00000454018 FRAT1Q92837 279 aaPredicted RBP11.1□□□□□ -0.63
SYNE1-214ENST00000454018 NIP7Q9Y221 180 aaKnown RBP eCLIP11.1□□□□□ -0.63
SYNE1-214ENST00000454018 ABCC4O15439 1325 aa11.1□□□□□ -0.63
SYNE1-214ENST00000454018 RNF123Q5XPI4 1314 aa11.1□□□□□ -0.63
SYNE1-214ENST00000454018 F6X3S4 739 aa11.09□□□□□ -0.63
SYNE1-214ENST00000454018 MMP10P09238 476 aa11.09□□□□□ -0.63
SYNE1-214ENST00000454018 TRIM27P14373 513 aa11.09□□□□□ -0.63
SYNE1-214ENST00000454018 POLD1P28340 1107 aa11.09□□□□□ -0.63
SYNE1-214ENST00000454018 ZNF34Q8IZ26 560 aa11.09□□□□□ -0.63
SYNE1-214ENST00000454018 LINS1Q8NG48 757 aa11.09□□□□□ -0.63
SYNE1-214ENST00000454018 SETDB2Q96T68 719 aa11.09□□□□□ -0.63
SYNE1-214ENST00000454018 MYD88Q99836 296 aa11.09□□□□□ -0.63
SYNE1-214ENST00000454018 UBN2Q6ZU65 1347 aa11.09□□□□□ -0.63
SYNE1-214ENST00000454018 RIC1Q4ADV7 1423 aa11.09□□□□□ -0.63
SYNE1-214ENST00000454018 CENPBP07199 599 aaPredicted RBP11.09□□□□□ -0.63
SYNE1-214ENST00000454018 MS4A1P11836 297 aa11.09□□□□□ -0.63
SYNE1-214ENST00000454018 TRIM28Q13263 835 aaKnown RBP11.09□□□□□ -0.63
SYNE1-214ENST00000454018 FTSJ3Q8IY81 847 aaKnown RBP11.09□□□□□ -0.63
SYNE1-214ENST00000454018 CCDC191Q8NCU4 936 aa11.09□□□□□ -0.63
SYNE1-214ENST00000454018 DDRGK1Q96HY6 314 aa11.09□□□□□ -0.63
SYNE1-214ENST00000454018 ISCA1Q9BUE6 129 aa11.09□□□□□ -0.63
SYNE1-214ENST00000454018 SPON1Q9HCB6 807 aa11.09□□□□□ -0.63
SYNE1-214ENST00000454018 SPEF2Q9C093 1822 aa11.08□□□□□ -0.64
SYNE1-214ENST00000454018 C10orf71Q711Q0 1435 aa11.08□□□□□ -0.64
SYNE1-214ENST00000454018 POLRMTO00411 1230 aaKnown RBP11.08□□□□□ -0.64
SYNE1-214ENST00000454018 GPTP24298 496 aa11.08□□□□□ -0.64
SYNE1-214ENST00000454018 TM4SF1P30408 202 aa11.08□□□□□ -0.64
SYNE1-214ENST00000454018 DDR1Q08345 913 aa11.08□□□□□ -0.64
SYNE1-214ENST00000454018 SLC4A10Q6U841 1118 aa11.08□□□□□ -0.64
SYNE1-214ENST00000454018 BICDL1Q6ZP65 573 aa11.08□□□□□ -0.64
SYNE1-214ENST00000454018 PPP1R42Q7Z4L9 355 aa11.08□□□□□ -0.64
SYNE1-214ENST00000454018 CCDC102AQ96A19 550 aa11.08□□□□□ -0.64
SYNE1-214ENST00000454018 NYXQ9GZU5 481 aa11.08□□□□□ -0.64
SYNE1-214ENST00000454018 PARP3Q9Y6F1 533 aa11.08□□□□□ -0.64
SYNE1-214ENST00000454018 NEURL1BA8MQ27 555 aa11.07□□□□□ -0.64
SYNE1-214ENST00000454018 ATP5J2-PTCD1G3V325 749 aa11.07□□□□□ -0.64
SYNE1-214ENST00000454018 ALDH1L1O75891 902 aa11.07□□□□□ -0.64
SYNE1-214ENST00000454018 IGKV5-2P06315 115 aa11.07□□□□□ -0.64
SYNE1-214ENST00000454018 CCT4P50991 539 aaKnown RBP11.07□□□□□ -0.64
SYNE1-214ENST00000454018 BEND3Q5T5X7 828 aa11.07□□□□□ -0.64
SYNE1-214ENST00000454018 NLRP10Q86W26 655 aa11.07□□□□□ -0.64
SYNE1-214ENST00000454018 NBPF5PQ86XG9 351 aaPredicted RBP11.07□□□□□ -0.64
SYNE1-214ENST00000454018 PARP9Q8IXQ6 854 aa11.07□□□□□ -0.64
SYNE1-214ENST00000454018 CNBD1Q8NA66 436 aa11.07□□□□□ -0.64
SYNE1-214ENST00000454018 TMEM106CQ9BVX2 250 aa11.07□□□□□ -0.64
SYNE1-214ENST00000454018 SRCIN1Q9C0H9 1055 aa11.07□□□□□ -0.64
SYNE1-214ENST00000454018 CWC25Q9NXE8 425 aaPredicted RBP11.07□□□□□ -0.64
SYNE1-214ENST00000454018 NPHP1O15259 732 aa11.06□□□□□ -0.64
SYNE1-214ENST00000454018 NTSR2O95665 410 aa11.06□□□□□ -0.64
SYNE1-214ENST00000454018 SERPINB2P05120 415 aa11.06□□□□□ -0.64
SYNE1-214ENST00000454018 PTGER2P43116 358 aa11.06□□□□□ -0.64
SYNE1-214ENST00000454018 RRP1P56182 461 aaKnown RBP11.06□□□□□ -0.64
SYNE1-214ENST00000454018 CWF19L2Q2TBE0 894 aaKnown RBP11.06□□□□□ -0.64
SYNE1-214ENST00000454018 DZIP1LQ8IYY4 767 aaKnown RBP11.06□□□□□ -0.64
SYNE1-214ENST00000454018 ARFGEF1Q9Y6D6 1849 aa11.06□□□□□ -0.64
SYNE1-214ENST00000454018 SH3TC1Q8TE82 1336 aa11.05□□□□□ -0.64
SYNE1-214ENST00000454018 DSG2Q14126 1118 aa11.05□□□□□ -0.64
SYNE1-214ENST00000454018 GCKRQ14397 625 aa11.05□□□□□ -0.64
SYNE1-214ENST00000454018 INTS3Q68E01 1043 aaKnown RBP11.05□□□□□ -0.64
SYNE1-214ENST00000454018 TPTE2Q6XPS3 522 aa11.05□□□□□ -0.64
SYNE1-214ENST00000454018 CLUAP1Q96AJ1 413 aa11.05□□□□□ -0.64
SYNE1-214ENST00000454018 UTP14AQ9BVJ6 771 aaKnown RBP11.05□□□□□ -0.64
SYNE1-214ENST00000454018 TAF1P21675 1872 aa11.05□□□□□ -0.64
SYNE1-214ENST00000454018 ABCC12Q96J65 1359 aa11.05□□□□□ -0.64
SYNE1-214ENST00000454018 ST5P78524 1137 aa11.04□□□□□ -0.64
SYNE1-214ENST00000454018 MAP2K5Q13163 448 aa11.04□□□□□ -0.64
SYNE1-214ENST00000454018 PDE3AQ14432 1141 aa11.04□□□□□ -0.64
SYNE1-214ENST00000454018 AMHR2Q16671 573 aa11.04□□□□□ -0.64
SYNE1-214ENST00000454018 SUSD4Q5VX71 490 aa11.04□□□□□ -0.64
SYNE1-214ENST00000454018 ZBTB38Q8NAP3 1195 aaPredicted RBP11.04□□□□□ -0.64
SYNE1-214ENST00000454018 TRMT112Q9UI30 125 aaKnown RBP11.04□□□□□ -0.64
SYNE1-214ENST00000454018 A0A1B0GUL6 1792 aa11.04□□□□□ -0.64
SYNE1-214ENST00000454018 CDHR2Q9BYE9 1310 aa11.04□□□□□ -0.64
SYNE1-214ENST00000454018 GRM8O00222 908 aa11.04□□□□□ -0.64
SYNE1-214ENST00000454018 IRF6O14896 467 aa11.04□□□□□ -0.64
SYNE1-214ENST00000454018 PLIN1O60240 522 aa11.04□□□□□ -0.64
SYNE1-214ENST00000454018 PCCAP05165 728 aaPredicted RBP11.04□□□□□ -0.64
SYNE1-214ENST00000454018 HSP90B1P14625 803 aaKnown RBP11.04□□□□□ -0.64
SYNE1-214ENST00000454018 GTF2E1P29083 439 aaPredicted RBP11.04□□□□□ -0.64
SYNE1-214ENST00000454018 PRR5LQ6MZQ0 368 aa11.04□□□□□ -0.64
SYNE1-214ENST00000454018 TNNQ9UQP3 1299 aa11.04□□□□□ -0.64
SYNE1-214ENST00000454018 FAM177BA6PVY3 158 aa11.03□□□□□ -0.64
SYNE1-214ENST00000454018 RLBP1P12271 317 aa11.03□□□□□ -0.64
SYNE1-214ENST00000454018 ITPRIPQ8IWB1 547 aa11.03□□□□□ -0.64
SYNE1-214ENST00000454018 TMEM57Q8N5G2 664 aa11.03□□□□□ -0.64
SYNE1-214ENST00000454018 PHF12Q96QT6 1004 aa11.03□□□□□ -0.64
SYNE1-214ENST00000454018 C9orf78Q9NZ63 289 aaPredicted RBP11.03□□□□□ -0.64
SYNE1-214ENST00000454018 UTYO14607 1347 aa11.02□□□□□ -0.65
Retrieved 100 of 20,778 RNA–protein pairs in 14.9 ms