RNA–Protein interactions for RNA: ENST00000448971.5

USP39-206, Transcript of ubiquitin specific peptidase 39, humanhuman

TSL 3

Gene USP39, Length 610 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP39-206ENST00000448971 HOXA10P31260 410 aaPredicted RBP18.71■□□□□ 0.59
USP39-206ENST00000448971 EXOSC9Q06265 439 aaKnown RBP18.71■□□□□ 0.59
USP39-206ENST00000448971 PARP10Q53GL7 1025 aa18.71■□□□□ 0.59
USP39-206ENST00000448971 PLBD2Q8NHP8 589 aa18.71■□□□□ 0.59
USP39-206ENST00000448971 RASSF10A6NK89 507 aa18.7■□□□□ 0.58
USP39-206ENST00000448971 TCERG1O14776 1098 aaKnown RBP18.7■□□□□ 0.58
USP39-206ENST00000448971 CTCFP49711 727 aaPredicted RBP18.7■□□□□ 0.58
USP39-206ENST00000448971 CC2D2BQ6DHV5 1058 aa18.7■□□□□ 0.58
USP39-206ENST00000448971 PPP1R42Q7Z4L9 355 aa18.7■□□□□ 0.58
USP39-206ENST00000448971 ZNF34Q8IZ26 560 aa18.7■□□□□ 0.58
USP39-206ENST00000448971 PHAXQ9H814 394 aaKnown RBP18.7■□□□□ 0.58
USP39-206ENST00000448971 COL4A5P29400 1685 aa18.69■□□□□ 0.58
USP39-206ENST00000448971 DEFB115Q30KQ5 88 aa18.69■□□□□ 0.58
USP39-206ENST00000448971 SUSD4Q5VX71 490 aa18.69■□□□□ 0.58
USP39-206ENST00000448971 ANKRD13DQ6ZTN6 518 aa18.69■□□□□ 0.58
USP39-206ENST00000448971 RIC3Q7Z5B4 369 aa18.69■□□□□ 0.58
USP39-206ENST00000448971 JDP2Q8WYK2 163 aa18.69■□□□□ 0.58
USP39-206ENST00000448971 NTSR2O95665 410 aa18.68■□□□□ 0.58
USP39-206ENST00000448971 DDX58O95786 925 aaKnown RBP18.68■□□□□ 0.58
USP39-206ENST00000448971 TCIRG1Q13488 830 aa18.67■□□□□ 0.58
USP39-206ENST00000448971 SLC51AQ86UW1 340 aa18.67■□□□□ 0.58
USP39-206ENST00000448971 UTP14AQ9BVJ6 771 aaKnown RBP18.67■□□□□ 0.58
USP39-206ENST00000448971 RIC1Q4ADV7 1423 aa18.66■□□□□ 0.58
USP39-206ENST00000448971 E9PSI1 815 aa18.66■□□□□ 0.58
USP39-206ENST00000448971 EPS15P42566 896 aa18.66■□□□□ 0.58
USP39-206ENST00000448971 SCNN1DP51172 638 aa18.66■□□□□ 0.58
USP39-206ENST00000448971 LBX1P52954 281 aa18.66■□□□□ 0.58
USP39-206ENST00000448971 EIF6P56537 245 aaKnown RBP18.66■□□□□ 0.58
USP39-206ENST00000448971 GRIPAP1Q4V328 841 aa18.66■□□□□ 0.58
USP39-206ENST00000448971 AIDAQ96BJ3 306 aa18.66■□□□□ 0.58
USP39-206ENST00000448971 CRAMP1Q96RY5 1269 aa18.66■□□□□ 0.58
USP39-206ENST00000448971 LTBP1Q14766 1721 aa18.66■□□□□ 0.58
USP39-206ENST00000448971 C3orf67Q6ZVT6 689 aa18.65■□□□□ 0.58
USP39-206ENST00000448971 NLRP10Q86W26 655 aa18.65■□□□□ 0.58
USP39-206ENST00000448971 RPGRQ92834 1020 aaKnown RBP18.65■□□□□ 0.58
USP39-206ENST00000448971 GJA3Q9Y6H8 435 aa18.65■□□□□ 0.58
USP39-206ENST00000448971 WDR33Q9C0J8 1336 aaKnown RBP18.65■□□□□ 0.58
USP39-206ENST00000448971 ATP5J2-PTCD1G3V325 749 aa18.64■□□□□ 0.57
USP39-206ENST00000448971 VAMP4O75379 141 aa18.64■□□□□ 0.57
USP39-206ENST00000448971 FMR1Q06787 632 aaKnown RBP eCLIP18.64■□□□□ 0.573e-6■■■□□ 16.1
USP39-206ENST00000448971 ZNF428Q96B54 188 aa18.64■□□□□ 0.57
USP39-206ENST00000448971 TRMT112Q9UI30 125 aaKnown RBP18.64■□□□□ 0.57
USP39-206ENST00000448971 HSPA8P11142 646 aaKnown RBP18.63■□□□□ 0.57
USP39-206ENST00000448971 LARGE2Q8N3Y3 721 aa18.63■□□□□ 0.57
USP39-206ENST00000448971 RBM17Q96I25 401 aaKnown RBP18.63■□□□□ 0.57
USP39-206ENST00000448971 MYD88Q99836 296 aa18.63■□□□□ 0.57
USP39-206ENST00000448971 SH3TC1Q8TE82 1336 aa18.63■□□□□ 0.57
USP39-206ENST00000448971 MAP2K1Q02750 393 aaPredicted RBP18.62■□□□□ 0.57
USP39-206ENST00000448971 CST9Q5W186 159 aa18.62■□□□□ 0.57
USP39-206ENST00000448971 MAP3K2Q9Y2U5 619 aa18.62■□□□□ 0.57
USP39-206ENST00000448971 PPEF1O14829 653 aaPredicted RBP18.61■□□□□ 0.57
USP39-206ENST00000448971 LMOD1P29536 600 aaPredicted RBP18.61■□□□□ 0.57
USP39-206ENST00000448971 FLIIQ13045 1269 aa18.61■□□□□ 0.57
USP39-206ENST00000448971 FKBP5Q13451 457 aaPredicted RBP18.61■□□□□ 0.57
USP39-206ENST00000448971 SLC10A5Q5PT55 438 aa18.61■□□□□ 0.57
USP39-206ENST00000448971 USP50Q70EL3 339 aaPredicted RBP18.61■□□□□ 0.57
USP39-206ENST00000448971 G2E3Q7L622 706 aa18.61■□□□□ 0.57
USP39-206ENST00000448971 ISCA1Q9BUE6 129 aa18.61■□□□□ 0.57
USP39-206ENST00000448971 ABT1Q9ULW3 272 aaKnown RBP18.61■□□□□ 0.57
USP39-206ENST00000448971 PI4KAP2A4QPH2 592 aa18.6■□□□□ 0.57
USP39-206ENST00000448971 HNRNPUQ00839 825 aaKnown RBP eCLIP18.6■□□□□ 0.57
USP39-206ENST00000448971 SLFN5Q08AF3 891 aa18.6■□□□□ 0.57
USP39-206ENST00000448971 KSR2Q6VAB6 950 aa18.6■□□□□ 0.57
USP39-206ENST00000448971 PI4KAP1Q8N8J0 262 aa18.6■□□□□ 0.57
USP39-206ENST00000448971 CDCA7LQ96GN5 454 aa18.6■□□□□ 0.57
USP39-206ENST00000448971 NEXNQ0ZGT2 675 aa18.59■□□□□ 0.57
USP39-206ENST00000448971 NLRP3Q96P20 1036 aa18.59■□□□□ 0.57
USP39-206ENST00000448971 METTL22Q9BUU2 404 aaPredicted RBP18.59■□□□□ 0.57
USP39-206ENST00000448971 VPS33BQ9H267 617 aa18.59■□□□□ 0.57
USP39-206ENST00000448971 ATP6V0A2Q9Y487 856 aa18.59■□□□□ 0.57
USP39-206ENST00000448971 LAMB2P55268 1798 aa18.58■□□□□ 0.57
USP39-206ENST00000448971 TRAF5O00463 557 aa18.58■□□□□ 0.56
USP39-206ENST00000448971 HCLS1P14317 486 aaPredicted RBP18.58■□□□□ 0.56
USP39-206ENST00000448971 RTL5Q5HYW3 569 aaPredicted RBP18.58■□□□□ 0.56
USP39-206ENST00000448971 NIM1KQ8IY84 436 aa18.58■□□□□ 0.56
USP39-206ENST00000448971 RTFDC1Q9BY42 306 aaPredicted RBP18.58■□□□□ 0.56
USP39-206ENST00000448971 TRPM7Q96QT4 1865 aa18.57■□□□□ 0.56
USP39-206ENST00000448971 PPIP5K2O43314 1243 aa18.57■□□□□ 0.56
USP39-206ENST00000448971 CXCL9Q07325 125 aa18.57■□□□□ 0.56
USP39-206ENST00000448971 AOC3Q16853 763 aa18.57■□□□□ 0.56
USP39-206ENST00000448971 FAM89AQ96GI7 184 aa18.57■□□□□ 0.56
USP39-206ENST00000448971 CAPNS2Q96L46 248 aa18.57■□□□□ 0.56
USP39-206ENST00000448971 CWC25Q9NXE8 425 aaPredicted RBP18.57■□□□□ 0.56
USP39-206ENST00000448971 GPRC5DQ9NZD1 345 aa18.57■□□□□ 0.56
USP39-206ENST00000448971 DDX60Q8IY21 1712 aaKnown RBP18.57■□□□□ 0.56
USP39-206ENST00000448971 TRIM28Q13263 835 aaKnown RBP18.56■□□□□ 0.56
USP39-206ENST00000448971 CYP4F22Q6NT55 531 aa18.56■□□□□ 0.56
USP39-206ENST00000448971 CCDC191Q8NCU4 936 aa18.56■□□□□ 0.56
USP39-206ENST00000448971 ABHD8Q96I13 439 aa18.56■□□□□ 0.56
USP39-206ENST00000448971 GPR101Q96P66 508 aaPredicted RBP18.56■□□□□ 0.56
USP39-206ENST00000448971 TLL2Q9Y6L7 1015 aa18.56■□□□□ 0.56
USP39-206ENST00000448971 ABCC4O15439 1325 aa18.55■□□□□ 0.56
USP39-206ENST00000448971 DNAAF4Q8WXU2 420 aa18.55■□□□□ 0.56
USP39-206ENST00000448971 ADARB2Q9NS39 739 aaKnown RBP18.55■□□□□ 0.56
USP39-206ENST00000448971 PGAP2Q9UHJ9 254 aa18.55■□□□□ 0.56
USP39-206ENST00000448971 ZNRF3Q9ULT6 936 aa18.55■□□□□ 0.56
USP39-206ENST00000448971 CACNA1FO60840 1977 aa18.55■□□□□ 0.56
USP39-206ENST00000448971 BBOX1O75936 387 aa18.54■□□□□ 0.56
USP39-206ENST00000448971 ECE1P42892 770 aa18.54■□□□□ 0.56
USP39-206ENST00000448971 CWF19L2Q2TBE0 894 aaKnown RBP18.54■□□□□ 0.56
Retrieved 100 of 20,778 RNA–protein pairs in 70.3 ms