RNA–Protein interactions for RNA: ENST00000447578.6

VPS29-202, Transcript of VPS29, retromer complex component, humanhuman

TSL 1 (best) BASIC

Gene VPS29, Length 996 nt, Biotype protein coding, Subcellular localisation Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS29-202ENST00000447578 FAM196BA6NMK8 535 aa8.02□□□□□ -1.13
VPS29-202ENST00000447578 AFF1P51825 1210 aaKnown RBP8.02□□□□□ -1.13
VPS29-202ENST00000447578 SHISA2Q6UWI4 295 aa8.02□□□□□ -1.13
VPS29-202ENST00000447578 KRT25Q7Z3Z0 450 aa8.02□□□□□ -1.13
VPS29-202ENST00000447578 ARXQ96QS3 562 aa8.02□□□□□ -1.13
VPS29-202ENST00000447578 NACC1Q96RE7 527 aa8.02□□□□□ -1.13
VPS29-202ENST00000447578 INPP5BP32019 993 aa8.01□□□□□ -1.13
VPS29-202ENST00000447578 IDH3AP50213 366 aa8.01□□□□□ -1.13
VPS29-202ENST00000447578 DGKZQ13574 1117 aa8.01□□□□□ -1.13
VPS29-202ENST00000447578 DMRTC2Q8IXT2 367 aaPredicted RBP8.01□□□□□ -1.13
VPS29-202ENST00000447578 QTRT2Q9H974 415 aaKnown RBP8.01□□□□□ -1.13
VPS29-202ENST00000447578 ZFATQ9P243 1243 aa8.01□□□□□ -1.13
VPS29-202ENST00000447578 A6NJR5 290 aa8□□□□□ -1.13
VPS29-202ENST00000447578 CPB1P15086 417 aa8□□□□□ -1.13
VPS29-202ENST00000447578 FZD5Q13467 585 aa8□□□□□ -1.13
VPS29-202ENST00000447578 CDCA8Q53HL2 280 aa8□□□□□ -1.13
VPS29-202ENST00000447578 EFCC1Q9HA90 598 aa8□□□□□ -1.13
VPS29-202ENST00000447578 ZBTB42B2RXF5 422 aa7.99□□□□□ -1.13
VPS29-202ENST00000447578 C9orf172C9J069 976 aa7.99□□□□□ -1.13
VPS29-202ENST00000447578 RGS9O75916 674 aaPredicted RBP7.99□□□□□ -1.13
VPS29-202ENST00000447578 ELNP15502 786 aa7.99□□□□□ -1.13
VPS29-202ENST00000447578 TARSP26639 723 aaKnown RBP7.99□□□□□ -1.13
VPS29-202ENST00000447578 WEE1P30291 646 aa7.99□□□□□ -1.13
VPS29-202ENST00000447578 PLAURQ03405 335 aa7.99□□□□□ -1.13
VPS29-202ENST00000447578 ADGRE1Q14246 886 aa7.99□□□□□ -1.13
VPS29-202ENST00000447578 MBTPS1Q14703 1052 aa7.99□□□□□ -1.13
VPS29-202ENST00000447578 C14orf37Q86TY3 774 aa7.99□□□□□ -1.13
VPS29-202ENST00000447578 FAM35AQ86V20 835 aa7.99□□□□□ -1.13
VPS29-202ENST00000447578 FMNL2Q96PY5 1086 aa7.99□□□□□ -1.13
VPS29-202ENST00000447578 USP20Q9Y2K6 914 aa7.99□□□□□ -1.13
VPS29-202ENST00000447578 SASH3O75995 380 aa7.98□□□□□ -1.13
VPS29-202ENST00000447578 RAC1P63000 192 aa7.98□□□□□ -1.13
VPS29-202ENST00000447578 MLLT1Q03111 559 aaPredicted RBP7.98□□□□□ -1.13
VPS29-202ENST00000447578 ILDR2Q71H61 639 aa7.98□□□□□ -1.13
VPS29-202ENST00000447578 IFT43Q96FT9 208 aa7.98□□□□□ -1.13
VPS29-202ENST00000447578 MICAL2O94851 1124 aa7.97□□□□□ -1.13
VPS29-202ENST00000447578 EPB42P16452 691 aa7.97□□□□□ -1.13
VPS29-202ENST00000447578 CFAP70Q5T0N1 1121 aa7.97□□□□□ -1.13
VPS29-202ENST00000447578 LENG1Q96BZ8 264 aaPredicted RBP7.97□□□□□ -1.13
VPS29-202ENST00000447578 LPIN3Q9BQK8 851 aa7.97□□□□□ -1.13
VPS29-202ENST00000447578 ZNF777Q9ULD5 760 aaPredicted RBP7.97□□□□□ -1.13
VPS29-202ENST00000447578 COL17A1Q9UMD9 1497 aaPredicted RBP7.97□□□□□ -1.13
VPS29-202ENST00000447578 ARSDP51689 593 aa7.96□□□□□ -1.14
VPS29-202ENST00000447578 GRIK5Q16478 980 aa7.96□□□□□ -1.14
VPS29-202ENST00000447578 C11orf91Q3C1V1 193 aa7.96□□□□□ -1.14
VPS29-202ENST00000447578 PERM1Q5SV97 790 aa7.96□□□□□ -1.14
VPS29-202ENST00000447578 DHX32Q7L7V1 743 aaKnown RBP7.96□□□□□ -1.14
VPS29-202ENST00000447578 FMR1NBQ8N0W7 255 aaPredicted RBP7.96□□□□□ -1.14
VPS29-202ENST00000447578 VTI1AQ96AJ9 217 aa7.96□□□□□ -1.14
VPS29-202ENST00000447578 LRFN2Q9ULH4 789 aa7.96□□□□□ -1.14
VPS29-202ENST00000447578 OPLAHO14841 1288 aa7.95□□□□□ -1.14
VPS29-202ENST00000447578 FOXO3O43524 673 aa7.95□□□□□ -1.14
VPS29-202ENST00000447578 MAP3K6O95382 1288 aa7.95□□□□□ -1.14
VPS29-202ENST00000447578 RARAP10276 462 aa7.95□□□□□ -1.14
VPS29-202ENST00000447578 MSL1Q68DK7 614 aa7.95□□□□□ -1.14
VPS29-202ENST00000447578 HFE2Q6ZVN8 426 aa7.95□□□□□ -1.14
VPS29-202ENST00000447578 TXNRD3Q86VQ6 643 aa7.95□□□□□ -1.14
VPS29-202ENST00000447578 FAM200AQ8TCP9 573 aa7.95□□□□□ -1.14
VPS29-202ENST00000447578 USP21Q9UK80 565 aa7.95□□□□□ -1.14
VPS29-202ENST00000447578 RFX1P22670 979 aa7.94□□□□□ -1.14
VPS29-202ENST00000447578 ELMSAN1Q6PJG2 1045 aa7.94□□□□□ -1.14
VPS29-202ENST00000447578 TRPM4Q8TD43 1214 aa7.94□□□□□ -1.14
VPS29-202ENST00000447578 MYO19Q96H55 970 aa7.94□□□□□ -1.14
VPS29-202ENST00000447578 RTCBQ9Y3I0 505 aaKnown RBP7.94□□□□□ -1.14
VPS29-202ENST00000447578 NRG1Q02297 640 aaPredicted RBP7.93□□□□□ -1.14
VPS29-202ENST00000447578 PRIMPOLQ96LW4 560 aa7.93□□□□□ -1.14
VPS29-202ENST00000447578 H2AFB1P0C5Y9 115 aa7.92□□□□□ -1.14
VPS29-202ENST00000447578 H2AFB2P0C5Z0 115 aa7.92□□□□□ -1.14
VPS29-202ENST00000447578 FKBP5Q13451 457 aaPredicted RBP7.92□□□□□ -1.14
VPS29-202ENST00000447578 PCSK7Q16549 785 aa7.92□□□□□ -1.14
VPS29-202ENST00000447578 TP53INP1Q96A56 240 aa7.92□□□□□ -1.14
VPS29-202ENST00000447578 GPLD1P80108 840 aa7.91□□□□□ -1.14
VPS29-202ENST00000447578 COX20Q5RI15 118 aa7.91□□□□□ -1.14
VPS29-202ENST00000447578 TREML1Q86YW5 311 aa7.91□□□□□ -1.14
VPS29-202ENST00000447578 RGL4Q8IZJ4 473 aa7.91□□□□□ -1.14
VPS29-202ENST00000447578 CMTR1Q8N1G2 835 aaKnown RBP7.91□□□□□ -1.14
VPS29-202ENST00000447578 SMG9Q9H0W8 520 aaKnown RBP7.91□□□□□ -1.14
VPS29-202ENST00000447578 FRRS1LQ9P0K9 344 aa7.91□□□□□ -1.14
VPS29-202ENST00000447578 NOVA2Q9UNW9 492 aaKnown RBP7.91□□□□□ -1.14
VPS29-202ENST00000447578 J3QW42 95 aa7.9□□□□□ -1.14
VPS29-202ENST00000447578 XYLBO75191 536 aa7.9□□□□□ -1.14
VPS29-202ENST00000447578 FBXO11Q86XK2 927 aa7.9□□□□□ -1.14
VPS29-202ENST00000447578 WFDC8Q8IUA0 241 aa7.9□□□□□ -1.14
VPS29-202ENST00000447578 SSBP4Q9BWG4 385 aaPredicted RBP7.9□□□□□ -1.14
VPS29-202ENST00000447578 PRMT3O60678 531 aa7.89□□□□□ -1.15
VPS29-202ENST00000447578 EIF2AK2P19525 551 aaKnown RBP7.89□□□□□ -1.15
VPS29-202ENST00000447578 IREB2P48200 963 aaKnown RBP7.89□□□□□ -1.15
VPS29-202ENST00000447578 WFDC12Q8WWY7 111 aa7.89□□□□□ -1.15
VPS29-202ENST00000447578 SAP130Q9H0E3 1048 aa7.89□□□□□ -1.15
VPS29-202ENST00000447578 C11orf16Q9NQ32 467 aa7.89□□□□□ -1.15
VPS29-202ENST00000447578 TLR7Q9NYK1 1049 aaKnown RBP7.89□□□□□ -1.15
VPS29-202ENST00000447578 DEAF1O75398 565 aaPredicted RBP7.88□□□□□ -1.15
VPS29-202ENST00000447578 DTWD1Q8N5C7 304 aa7.88□□□□□ -1.15
VPS29-202ENST00000447578 TTC9Q92623 222 aa7.88□□□□□ -1.15
VPS29-202ENST00000447578 NSUN5Q96P11 429 aaKnown RBP7.88□□□□□ -1.15
VPS29-202ENST00000447578 UTP3Q9NQZ2 479 aaKnown RBP eCLIP7.88□□□□□ -1.15
VPS29-202ENST00000447578 KCNMB2Q9Y691 235 aa7.88□□□□□ -1.15
VPS29-202ENST00000447578 MMP20O60882 483 aa7.87□□□□□ -1.15
VPS29-202ENST00000447578 EGFRP00533 1210 aa7.87□□□□□ -1.15
VPS29-202ENST00000447578 NOS3P29474 1203 aa7.87□□□□□ -1.15
Retrieved 100 of 20,778 RNA–protein pairs in 28.7 ms