RNA–Protein interactions for RNA: ENST00000442151.6

CD44-211, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 1 (best)

Gene CD44, Length 1,825 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-211ENST00000442151 SYNE4Q8N205 404 aa10.1□□□□□ -0.79
CD44-211ENST00000442151 C7orf43Q8WVR3 580 aa10.1□□□□□ -0.79
CD44-211ENST00000442151 PSMD1Q99460 953 aa10.1□□□□□ -0.79
CD44-211ENST00000442151 THUMPD2Q9BTF0 503 aaKnown RBP10.1□□□□□ -0.79
CD44-211ENST00000442151 ZBTB3Q9H5J0 574 aa10.1□□□□□ -0.79
CD44-211ENST00000442151 DDX21Q9NR30 783 aaKnown RBP eCLIP10.1□□□□□ -0.79
CD44-211ENST00000442151 LAS1LQ9Y4W2 734 aaKnown RBP10.1□□□□□ -0.79
CD44-211ENST00000442151 RIC1Q4ADV7 1423 aa10.1□□□□□ -0.79
CD44-211ENST00000442151 CHL1O00533 1208 aa10.1□□□□□ -0.79
CD44-211ENST00000442151 BBOX1O75936 387 aa10.1□□□□□ -0.79
CD44-211ENST00000442151 IARSP41252 1262 aaKnown RBP10.1□□□□□ -0.79
CD44-211ENST00000442151 CRY2Q49AN0 593 aa10.1□□□□□ -0.79
CD44-211ENST00000442151 SLC10A5Q5PT55 438 aa10.1□□□□□ -0.79
CD44-211ENST00000442151 TTLL7Q6ZT98 887 aa10.1□□□□□ -0.79
CD44-211ENST00000442151 TMC4Q7Z404 712 aa10.1□□□□□ -0.79
CD44-211ENST00000442151 PNMA8AQ86V59 439 aaPredicted RBP10.1□□□□□ -0.79
CD44-211ENST00000442151 LAMB4A4D0S4 1761 aa10.09□□□□□ -0.79
CD44-211ENST00000442151 GPTP24298 496 aa10.09□□□□□ -0.79
CD44-211ENST00000442151 SUSD4Q5VX71 490 aa10.09□□□□□ -0.79
CD44-211ENST00000442151 KLRG1Q96E93 195 aa10.09□□□□□ -0.79
CD44-211ENST00000442151 HYPKQ9NX55 129 aa10.09□□□□□ -0.79
CD44-211ENST00000442151 DBF4Q9UBU7 674 aaPredicted RBP10.09□□□□□ -0.79
CD44-211ENST00000442151 KDM3BQ7LBC6 1761 aa10.09□□□□□ -0.79
CD44-211ENST00000442151 DLG5Q8TDM6 1919 aa10.08□□□□□ -0.8
CD44-211ENST00000442151 GNAI1P63096 354 aa10.08□□□□□ -0.8
CD44-211ENST00000442151 MKRN3Q13064 507 aaKnown RBP10.08□□□□□ -0.8
CD44-211ENST00000442151 TCIRG1Q13488 830 aa10.08□□□□□ -0.8
CD44-211ENST00000442151 COPS6Q7L5N1 327 aa10.08□□□□□ -0.8
CD44-211ENST00000442151 ZNF687Q8N1G0 1237 aa10.08□□□□□ -0.8
CD44-211ENST00000442151 DNAJC5GQ8N7S2 189 aa10.08□□□□□ -0.8
CD44-211ENST00000442151 CFAP44Q96MT7 982 aa10.08□□□□□ -0.8
CD44-211ENST00000442151 PLA2G2EQ9NZK7 142 aa10.08□□□□□ -0.8
CD44-211ENST00000442151 ANKRD31Q8N7Z5 1873 aa10.08□□□□□ -0.8
CD44-211ENST00000442151 LMOD1P29536 600 aaPredicted RBP10.07□□□□□ -0.8
CD44-211ENST00000442151 VARS2Q5ST30 1063 aaKnown RBP10.07□□□□□ -0.8
CD44-211ENST00000442151 DDX46Q7L014 1031 aaKnown RBP10.07□□□□□ -0.8
CD44-211ENST00000442151 LDHDQ86WU2 507 aa10.07□□□□□ -0.8
CD44-211ENST00000442151 NUTM1Q86Y26 1132 aa10.07□□□□□ -0.8
CD44-211ENST00000442151 CCDC146Q8IYE0 955 aa10.07□□□□□ -0.8
CD44-211ENST00000442151 PRKRIP1Q9H875 184 aaPredicted RBP10.07□□□□□ -0.8
CD44-211ENST00000442151 HACL1Q9UJ83 578 aa10.07□□□□□ -0.8
CD44-211ENST00000442151 ADAMTS8Q9UP79 889 aa10.07□□□□□ -0.8
CD44-211ENST00000442151 FER1L6Q2WGJ9 1857 aa10.07□□□□□ -0.8
CD44-211ENST00000442151 DICER1Q9UPY3 1922 aaKnown RBP10.07□□□□□ -0.8
CD44-211ENST00000442151 PPEF1O14829 653 aaPredicted RBP10.07□□□□□ -0.8
CD44-211ENST00000442151 DDNO94850 711 aaPredicted RBP10.07□□□□□ -0.8
CD44-211ENST00000442151 PRELPP51888 382 aa10.07□□□□□ -0.8
CD44-211ENST00000442151 AIMP1Q12904 312 aaKnown RBP10.07□□□□□ -0.8
CD44-211ENST00000442151 HDGFL1Q5TGJ6 251 aa10.07□□□□□ -0.8
CD44-211ENST00000442151 ANKRD13DQ6ZTN6 518 aa10.07□□□□□ -0.8
CD44-211ENST00000442151 GPC2Q8N158 579 aa10.07□□□□□ -0.8
CD44-211ENST00000442151 PLBD2Q8NHP8 589 aa10.07□□□□□ -0.8
CD44-211ENST00000442151 ZNF277Q9NRM2 450 aaPredicted RBP10.07□□□□□ -0.8
CD44-211ENST00000442151 TRMT112Q9UI30 125 aaKnown RBP10.07□□□□□ -0.8
CD44-211ENST00000442151 ARFGEF2Q9Y6D5 1785 aa10.07□□□□□ -0.8
CD44-211ENST00000442151 WDR90Q96KV7 1748 aa10.06□□□□□ -0.8
CD44-211ENST00000442151 CCDC88AQ3V6T2 1871 aa10.06□□□□□ -0.8
CD44-211ENST00000442151 NTSR2O95665 410 aa10.06□□□□□ -0.8
CD44-211ENST00000442151 GOLGA2Q08379 1002 aa10.06□□□□□ -0.8
CD44-211ENST00000442151 IFFO2Q5TF58 517 aa10.06□□□□□ -0.8
CD44-211ENST00000442151 JMYQ8N9B5 988 aa10.06□□□□□ -0.8
CD44-211ENST00000442151 XAGE3Q8WTP9 111 aa10.06□□□□□ -0.8
CD44-211ENST00000442151 SLX4Q8IY92 1834 aa10.06□□□□□ -0.8
CD44-211ENST00000442151 SH3TC1Q8TE82 1336 aa10.06□□□□□ -0.8
CD44-211ENST00000442151 FZD9O00144 591 aa10.05□□□□□ -0.8
CD44-211ENST00000442151 DDX58O95786 925 aaKnown RBP10.05□□□□□ -0.8
CD44-211ENST00000442151 PDIA6Q15084 440 aa10.05□□□□□ -0.8
CD44-211ENST00000442151 SP8Q8IXZ3 490 aa10.05□□□□□ -0.8
CD44-211ENST00000442151 NIM1KQ8IY84 436 aa10.05□□□□□ -0.8
CD44-211ENST00000442151 PLCD3Q8N3E9 789 aa10.05□□□□□ -0.8
CD44-211ENST00000442151 LARGE2Q8N3Y3 721 aa10.05□□□□□ -0.8
CD44-211ENST00000442151 TAF1DQ9H5J8 278 aaPredicted RBP10.05□□□□□ -0.8
CD44-211ENST00000442151 IFT57Q9NWB7 429 aa10.05□□□□□ -0.8
CD44-211ENST00000442151 ATP6V0A2Q9Y487 856 aa10.05□□□□□ -0.8
CD44-211ENST00000442151 RIMBP2O15034 1052 aa10.05□□□□□ -0.8
CD44-211ENST00000442151 NLRP10Q86W26 655 aa10.05□□□□□ -0.8
CD44-211ENST00000442151 NUP98P52948 1817 aa10.04□□□□□ -0.8
CD44-211ENST00000442151 POTECB2RU33 542 aa10.04□□□□□ -0.8
CD44-211ENST00000442151 TRIM28Q13263 835 aaKnown RBP10.04□□□□□ -0.8
CD44-211ENST00000442151 DUSP27Q5VZP5 1158 aa10.04□□□□□ -0.8
CD44-211ENST00000442151 NECTIN2Q92692 538 aa10.04□□□□□ -0.8
CD44-211ENST00000442151 UBN2Q6ZU65 1347 aa10.04□□□□□ -0.8
CD44-211ENST00000442151 COL11A2P13942 1736 aaPredicted RBP10.03□□□□□ -0.8
CD44-211ENST00000442151 TIAM2Q8IVF5 1701 aa10.03□□□□□ -0.8
CD44-211ENST00000442151 EPHX2P34913 555 aa10.03□□□□□ -0.8
CD44-211ENST00000442151 TNIP1Q15025 636 aa10.03□□□□□ -0.8
CD44-211ENST00000442151 CCDC30Q5VVM6 783 aa10.03□□□□□ -0.8
CD44-211ENST00000442151 DPP8Q6V1X1 898 aaPredicted RBP10.03□□□□□ -0.8
CD44-211ENST00000442151 LRP10Q7Z4F1 713 aa10.03□□□□□ -0.8
CD44-211ENST00000442151 RIC3Q7Z5B4 369 aa10.03□□□□□ -0.8
CD44-211ENST00000442151 MPNDQ8N594 471 aa10.03□□□□□ -0.8
CD44-211ENST00000442151 APAF1O14727 1248 aa10.03□□□□□ -0.8
CD44-211ENST00000442151 PPIP5K2O43314 1243 aa10.03□□□□□ -0.8
CD44-211ENST00000442151 GRAPQ13588 217 aa10.03□□□□□ -0.8
CD44-211ENST00000442151 EAPPQ56P03 285 aaPredicted RBP10.03□□□□□ -0.8
CD44-211ENST00000442151 USP50Q70EL3 339 aaPredicted RBP10.03□□□□□ -0.8
CD44-211ENST00000442151 GRAPLQ8TC17 118 aaPredicted RBP10.03□□□□□ -0.8
CD44-211ENST00000442151 CHPF2Q9P2E5 772 aa10.03□□□□□ -0.8
CD44-211ENST00000442151 GJA3Q9Y6H8 435 aa10.03□□□□□ -0.8
CD44-211ENST00000442151 SCN4AP35499 1836 aa10.03□□□□□ -0.8
Retrieved 100 of 20,778 RNA–protein pairs in 13.2 ms