RNA–Protein interactions for RNA: ENST00000439316.6

CLCNKA-203, Transcript of chloride voltage-gated channel Ka, humanhuman

TSL 2 BASIC

Gene CLCNKA, Length 1,997 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLCNKA-203ENST00000439316 ME3Q16798 604 aa19.57■□□□□ 0.72
CLCNKA-203ENST00000439316 GLIPR1L2Q4G1C9 344 aa19.57■□□□□ 0.72
CLCNKA-203ENST00000439316 MAP4K1Q92918 833 aa19.57■□□□□ 0.72
CLCNKA-203ENST00000439316 EAF2Q96CJ1 260 aaPredicted RBP19.57■□□□□ 0.72
CLCNKA-203ENST00000439316 BICC1Q9H694 974 aaKnown RBP19.57■□□□□ 0.72
CLCNKA-203ENST00000439316 DDX21Q9NR30 783 aaKnown RBP eCLIP19.57■□□□□ 0.72
CLCNKA-203ENST00000439316 DDX58O95786 925 aaKnown RBP19.57■□□□□ 0.72
CLCNKA-203ENST00000439316 DNM1Q05193 864 aaKnown RBP19.57■□□□□ 0.72
CLCNKA-203ENST00000439316 NMIQ13287 307 aaPredicted RBP19.57■□□□□ 0.72
CLCNKA-203ENST00000439316 TTC5Q8N0Z6 440 aa19.57■□□□□ 0.72
CLCNKA-203ENST00000439316 ZNF496Q96IT1 587 aaPredicted RBP19.57■□□□□ 0.72
CLCNKA-203ENST00000439316 TNFRSF11AQ9Y6Q6 616 aaPredicted RBP19.57■□□□□ 0.72
CLCNKA-203ENST00000439316 HCLS1P14317 486 aaPredicted RBP19.56■□□□□ 0.72
CLCNKA-203ENST00000439316 KIAA2012Q0VF49 1180 aa19.56■□□□□ 0.72
CLCNKA-203ENST00000439316 FAM227BQ96M60 508 aa19.56■□□□□ 0.72
CLCNKA-203ENST00000439316 USP25Q9UHP3 1055 aa19.56■□□□□ 0.72
CLCNKA-203ENST00000439316 MED23Q9ULK4 1368 aa19.56■□□□□ 0.72
CLCNKA-203ENST00000439316 G3BP1Q13283 466 aaKnown RBP eCLIP19.55■□□□□ 0.72
CLCNKA-203ENST00000439316 C8orf37Q96NL8 207 aa19.55■□□□□ 0.72
CLCNKA-203ENST00000439316 PDCL3Q9H2J4 239 aa19.55■□□□□ 0.72
CLCNKA-203ENST00000439316 TPCN1Q9ULQ1 816 aa19.55■□□□□ 0.72
CLCNKA-203ENST00000439316 C5P01031 1676 aa19.55■□□□□ 0.72
CLCNKA-203ENST00000439316 TOGARAM1Q9Y4F4 1720 aa19.55■□□□□ 0.72
CLCNKA-203ENST00000439316 SLC27A2O14975 620 aa19.55■□□□□ 0.72
CLCNKA-203ENST00000439316 PDIA6Q15084 440 aa19.55■□□□□ 0.72
CLCNKA-203ENST00000439316 EXOC5O00471 708 aa19.54■□□□□ 0.72
CLCNKA-203ENST00000439316 PDIA4P13667 645 aaKnown RBP19.54■□□□□ 0.72
CLCNKA-203ENST00000439316 PSMA5P28066 241 aa19.54■□□□□ 0.72
CLCNKA-203ENST00000439316 NGLY1Q96IV0 654 aa19.54■□□□□ 0.72
CLCNKA-203ENST00000439316 TLR7Q9NYK1 1049 aaKnown RBP19.54■□□□□ 0.72
CLCNKA-203ENST00000439316 CCDC9Q9Y3X0 531 aaKnown RBP19.54■□□□□ 0.72
CLCNKA-203ENST00000439316 SPATA31A5Q5VU36 1347 aa19.54■□□□□ 0.72
CLCNKA-203ENST00000439316 SPATA31A7Q8IWB4 1347 aa19.54■□□□□ 0.72
CLCNKA-203ENST00000439316 UQCRHLA0A096LP55 91 aa19.53■□□□□ 0.72
CLCNKA-203ENST00000439316 ADCY5O95622 1261 aa19.53■□□□□ 0.72
CLCNKA-203ENST00000439316 UQCRHP07919 91 aa19.53■□□□□ 0.72
CLCNKA-203ENST00000439316 HSPA1LP34931 641 aa19.53■□□□□ 0.72
CLCNKA-203ENST00000439316 SASS6Q6UVJ0 657 aa19.53■□□□□ 0.72
CLCNKA-203ENST00000439316 CCDC8Q9H0W5 538 aaPredicted RBP19.53■□□□□ 0.72
CLCNKA-203ENST00000439316 THRAP3Q9Y2W1 955 aaKnown RBP19.53■□□□□ 0.72
CLCNKA-203ENST00000439316 A0A0D9SFI3 127 aa19.53■□□□□ 0.72
CLCNKA-203ENST00000439316 IGKV5-2P06315 115 aa19.53■□□□□ 0.72
CLCNKA-203ENST00000439316 NECAB1Q8N987 351 aa19.53■□□□□ 0.72
CLCNKA-203ENST00000439316 ALDH8A1Q9H2A2 487 aaPredicted RBP19.53■□□□□ 0.72
CLCNKA-203ENST00000439316 VPS37CA5D8V6 355 aaPredicted RBP19.52■□□□□ 0.72
CLCNKA-203ENST00000439316 KCNJ4P48050 445 aa19.52■□□□□ 0.72
CLCNKA-203ENST00000439316 FMNL2Q96PY5 1086 aa19.52■□□□□ 0.72
CLCNKA-203ENST00000439316 SPATA31A6Q5VVP1 1343 aa19.52■□□□□ 0.72
CLCNKA-203ENST00000439316 KDM4AO75164 1064 aa19.52■□□□□ 0.71
CLCNKA-203ENST00000439316 CDCA7Q9BWT1 371 aaPredicted RBP19.52■□□□□ 0.71
CLCNKA-203ENST00000439316 SNRPA1P09661 255 aaKnown RBP19.51■□□□□ 0.71
CLCNKA-203ENST00000439316 RNF20Q5VTR2 975 aa19.51■□□□□ 0.71
CLCNKA-203ENST00000439316 GIMAP6Q6P9H5 292 aa19.51■□□□□ 0.71
CLCNKA-203ENST00000439316 FSD1Q9BTV5 496 aa19.51■□□□□ 0.71
CLCNKA-203ENST00000439316 LRP6O75581 1613 aa19.51■□□□□ 0.71
CLCNKA-203ENST00000439316 DTNBO60941 627 aa19.5■□□□□ 0.71
CLCNKA-203ENST00000439316 AIMP1Q12904 312 aaKnown RBP19.5■□□□□ 0.71
CLCNKA-203ENST00000439316 ANKRD1Q15327 319 aa19.5■□□□□ 0.71
CLCNKA-203ENST00000439316 TPRNQ4KMQ1 711 aa19.5■□□□□ 0.71
CLCNKA-203ENST00000439316 PIBF1Q8WXW3 757 aa19.5■□□□□ 0.71
CLCNKA-203ENST00000439316 TNS2Q63HR2 1409 aa19.5■□□□□ 0.71
CLCNKA-203ENST00000439316 ELP1O95163 1332 aa19.5■□□□□ 0.71
CLCNKA-203ENST00000439316 BCL9LQ86UU0 1499 aa19.5■□□□□ 0.71
CLCNKA-203ENST00000439316 ITGB4P16144 1822 aa19.5■□□□□ 0.71
CLCNKA-203ENST00000439316 NEURL1BA8MQ27 555 aa19.5■□□□□ 0.71
CLCNKA-203ENST00000439316 RPS6KB1P23443 525 aa19.5■□□□□ 0.71
CLCNKA-203ENST00000439316 COL9A3Q14050 684 aaPredicted RBP19.5■□□□□ 0.71
CLCNKA-203ENST00000439316 LARP1BQ659C4 914 aaKnown RBP19.5■□□□□ 0.71
CLCNKA-203ENST00000439316 BLOC1S2Q6QNY1 142 aa19.5■□□□□ 0.71
CLCNKA-203ENST00000439316 BOLA2Q9H3K6 86 aa19.5■□□□□ 0.71
CLCNKA-203ENST00000439316 TMOD3Q9NYL9 352 aa19.5■□□□□ 0.71
CLCNKA-203ENST00000439316 HMG20BQ9P0W2 317 aa19.5■□□□□ 0.71
CLCNKA-203ENST00000439316 UBR2Q8IWV8 1755 aa19.49■□□□□ 0.71
CLCNKA-203ENST00000439316 DYNC1I1O14576 645 aa19.49■□□□□ 0.71
CLCNKA-203ENST00000439316 PDCP20941 246 aa19.49■□□□□ 0.71
CLCNKA-203ENST00000439316 DDB1Q16531 1140 aa19.49■□□□□ 0.71
CLCNKA-203ENST00000439316 TSGA10IPQ3SY00 556 aa19.49■□□□□ 0.71
CLCNKA-203ENST00000439316 RIC3Q7Z5B4 369 aa19.49■□□□□ 0.71
CLCNKA-203ENST00000439316 SIL1Q9H173 461 aa19.49■□□□□ 0.71
CLCNKA-203ENST00000439316 USP16Q9Y5T5 823 aa19.49■□□□□ 0.71
CLCNKA-203ENST00000439316 KRT85P78386 507 aa19.48■□□□□ 0.71
CLCNKA-203ENST00000439316 CDC37L1Q7L3B6 337 aa19.48■□□□□ 0.71
CLCNKA-203ENST00000439316 TTC6Q86TZ1 520 aa19.48■□□□□ 0.71
CLCNKA-203ENST00000439316 GLI3P10071 1580 aa19.48■□□□□ 0.71
CLCNKA-203ENST00000439316 PAPPAQ13219 1627 aa19.48■□□□□ 0.71
CLCNKA-203ENST00000439316 NEXNQ0ZGT2 675 aa19.48■□□□□ 0.71
CLCNKA-203ENST00000439316 GCKRQ14397 625 aa19.48■□□□□ 0.71
CLCNKA-203ENST00000439316 FNBP4Q8N3X1 1017 aaPredicted RBP19.48■□□□□ 0.71
CLCNKA-203ENST00000439316 TOB2Q14106 344 aaPredicted RBP19.47■□□□□ 0.71
CLCNKA-203ENST00000439316 EPHA10Q5JZY3 1008 aa19.47■□□□□ 0.71
CLCNKA-203ENST00000439316 BARGINQ6ZT62 677 aa19.47■□□□□ 0.71
CLCNKA-203ENST00000439316 ZNF589Q86UQ0 364 aaPredicted RBP19.47■□□□□ 0.71
CLCNKA-203ENST00000439316 PIGBQ92521 554 aa19.47■□□□□ 0.71
CLCNKA-203ENST00000439316 MAP7D2Q96T17 732 aa19.47■□□□□ 0.71
CLCNKA-203ENST00000439316 TAF6LQ9Y6J9 622 aa19.47■□□□□ 0.71
CLCNKA-203ENST00000439316 RFX7Q2KHR2 1363 aa19.47■□□□□ 0.71
CLCNKA-203ENST00000439316 PTCD1O75127 700 aaKnown RBP19.46■□□□□ 0.71
CLCNKA-203ENST00000439316 KLHDC4Q8TBB5 520 aa19.46■□□□□ 0.71
CLCNKA-203ENST00000439316 ZNF830Q96NB3 372 aaPredicted RBP19.46■□□□□ 0.71
CLCNKA-203ENST00000439316 METTL22Q9BUU2 404 aaPredicted RBP19.46■□□□□ 0.71
Retrieved 100 of 20,778 RNA–protein pairs in 10.1 ms