RNA–Protein interactions for RNA: ENST00000434233.2

LINC00339-204, long intergenic non-protein coding RNA 339, humanhuman

TSL 1 (best)

Gene LINC00339, Length 929 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00339-204ENST00000434233 CCDC152Q4G0S7 254 aa15.38■□□□□ 0.05
LINC00339-204ENST00000434233 PCDHB15Q9Y5E8 787 aa15.38■□□□□ 0.05
LINC00339-204ENST00000434233 CRY2Q49AN0 593 aa15.37■□□□□ 0.05
LINC00339-204ENST00000434233 C3orf67Q6ZVT6 689 aa15.37■□□□□ 0.05
LINC00339-204ENST00000434233 SSH3Q8TE77 659 aa15.37■□□□□ 0.05
LINC00339-204ENST00000434233 ANKRD31Q8N7Z5 1873 aa15.36■□□□□ 0.05
LINC00339-204ENST00000434233 SRGAP3O43295 1099 aa15.36■□□□□ 0.05
LINC00339-204ENST00000434233 TGFB2P61812 414 aa15.36■□□□□ 0.05
LINC00339-204ENST00000434233 POLA2Q14181 598 aa15.36■□□□□ 0.05
LINC00339-204ENST00000434233 CCDC57Q2TAC2 916 aa15.36■□□□□ 0.05
LINC00339-204ENST00000434233 CD2APQ9Y5K6 639 aa15.36■□□□□ 0.05
LINC00339-204ENST00000434233 RTL9Q8NET4 1388 aa15.36■□□□□ 0.05
LINC00339-204ENST00000434233 C10orf71Q711Q0 1435 aa15.35■□□□□ 0.05
LINC00339-204ENST00000434233 PNMA6EA0A0J9YXQ4 647 aa15.35■□□□□ 0.05
LINC00339-204ENST00000434233 ANKRD18BA2A2Z9 1011 aa15.35■□□□□ 0.05
LINC00339-204ENST00000434233 H0YIN7 160 aa15.35■□□□□ 0.05
LINC00339-204ENST00000434233 HMMRO75330 724 aa15.35■□□□□ 0.05
LINC00339-204ENST00000434233 HOXA10P31260 410 aaPredicted RBP15.35■□□□□ 0.05
LINC00339-204ENST00000434233 IFIT5Q13325 482 aaKnown RBP15.35■□□□□ 0.05
LINC00339-204ENST00000434233 SIRT2Q8IXJ6 389 aa15.35■□□□□ 0.05
LINC00339-204ENST00000434233 RBM17Q96I25 401 aaKnown RBP15.35■□□□□ 0.05
LINC00339-204ENST00000434233 GREM2Q9H772 168 aa15.35■□□□□ 0.05
LINC00339-204ENST00000434233 CHMP3Q9Y3E7 222 aa15.35■□□□□ 0.05
LINC00339-204ENST00000434233 KIF13BQ9NQT8 1826 aa15.34■□□□□ 0.05
LINC00339-204ENST00000434233 SRGNP10124 158 aa15.34■□□□□ 0.05
LINC00339-204ENST00000434233 NPR1P16066 1061 aa15.34■□□□□ 0.05
LINC00339-204ENST00000434233 ITGA6P23229 1130 aa15.34■□□□□ 0.05
LINC00339-204ENST00000434233 RFX5P48382 616 aaPredicted RBP15.34■□□□□ 0.05
LINC00339-204ENST00000434233 DDX46Q7L014 1031 aaKnown RBP15.34■□□□□ 0.05
LINC00339-204ENST00000434233 C2CD5Q86YS7 1000 aa15.34■□□□□ 0.05
LINC00339-204ENST00000434233 RPGRQ92834 1020 aaKnown RBP15.34■□□□□ 0.05
LINC00339-204ENST00000434233 MASTLQ96GX5 879 aa15.34■□□□□ 0.05
LINC00339-204ENST00000434233 CCDC85AQ96PX6 553 aaPredicted RBP15.34■□□□□ 0.05
LINC00339-204ENST00000434233 CRAMP1Q96RY5 1269 aa15.34■□□□□ 0.05
LINC00339-204ENST00000434233 RWDD1Q9H446 243 aaPredicted RBP15.34■□□□□ 0.05
LINC00339-204ENST00000434233 ALDH1B1P30837 517 aa15.33■□□□□ 0.04
LINC00339-204ENST00000434233 HDAC1Q13547 482 aaPredicted RBP15.33■□□□□ 0.04
LINC00339-204ENST00000434233 FAM161AQ3B820 660 aa15.33■□□□□ 0.04
LINC00339-204ENST00000434233 STYK1Q6J9G0 422 aa15.33■□□□□ 0.04
LINC00339-204ENST00000434233 CDC5LQ99459 802 aaKnown RBP15.33■□□□□ 0.04
LINC00339-204ENST00000434233 COPRSQ9NQ92 184 aa15.33■□□□□ 0.04
LINC00339-204ENST00000434233 SEC31BQ9NQW1 1179 aa15.33■□□□□ 0.04
LINC00339-204ENST00000434233 PPP4R2Q9NY27 417 aa15.33■□□□□ 0.04
LINC00339-204ENST00000434233 TNRC6CQ9HCJ0 1690 aaKnown RBP15.32■□□□□ 0.04
LINC00339-204ENST00000434233 RPS8P62241 208 aaKnown RBP15.32■□□□□ 0.04
LINC00339-204ENST00000434233 PTPN12Q05209 780 aaKnown RBP15.32■□□□□ 0.04
LINC00339-204ENST00000434233 FBXO3Q9UK99 471 aa15.32■□□□□ 0.04
LINC00339-204ENST00000434233 BBOX1O75936 387 aa15.31■□□□□ 0.04
LINC00339-204ENST00000434233 GRAPQ13588 217 aa15.31■□□□□ 0.04
LINC00339-204ENST00000434233 TAF7LQ5H9L4 462 aa15.31■□□□□ 0.04
LINC00339-204ENST00000434233 GRAPLQ8TC17 118 aaPredicted RBP15.31■□□□□ 0.04
LINC00339-204ENST00000434233 CNKSR1Q969H4 720 aa15.31■□□□□ 0.04
LINC00339-204ENST00000434233 NOP58Q9Y2X3 529 aaKnown RBP15.31■□□□□ 0.04
LINC00339-204ENST00000434233 IGHDP01880 384 aa15.3■□□□□ 0.04
LINC00339-204ENST00000434233 KCNA3P22001 575 aa15.3■□□□□ 0.04
LINC00339-204ENST00000434233 CHRNA5P30532 468 aa15.3■□□□□ 0.04
LINC00339-204ENST00000434233 IGHMBP2P38935 993 aaKnown RBP15.3■□□□□ 0.04
LINC00339-204ENST00000434233 ANKRD18AQ8IVF6 992 aa15.3■□□□□ 0.04
LINC00339-204ENST00000434233 CELF1Q92879 486 aaKnown RBP15.3■□□□□ 0.04
LINC00339-204ENST00000434233 ZNF622Q969S3 477 aaKnown RBP eCLIP15.3■□□□□ 0.04
LINC00339-204ENST00000434233 ZNF594Q96JF6 807 aaPredicted RBP15.3■□□□□ 0.04
LINC00339-204ENST00000434233 DCTPP1Q9H773 170 aa15.3■□□□□ 0.04
LINC00339-204ENST00000434233 A0A0G2JLW4 131 aa15.29■□□□□ 0.04
LINC00339-204ENST00000434233 SURF6O75683 361 aaKnown RBP15.29■□□□□ 0.04
LINC00339-204ENST00000434233 DPEP1P16444 411 aa15.29■□□□□ 0.04
LINC00339-204ENST00000434233 G3BP1Q13283 466 aaKnown RBP eCLIP15.29■□□□□ 0.04
LINC00339-204ENST00000434233 HSP90AB4PQ58FF6 505 aa15.29■□□□□ 0.04
LINC00339-204ENST00000434233 LDHAL6AQ6ZMR3 332 aa15.29■□□□□ 0.04
LINC00339-204ENST00000434233 TMC4Q7Z404 712 aa15.29■□□□□ 0.04
LINC00339-204ENST00000434233 KLHDC4Q8TBB5 520 aa15.29■□□□□ 0.04
LINC00339-204ENST00000434233 MPHOSPH8Q99549 860 aa15.29■□□□□ 0.04
LINC00339-204ENST00000434233 BSDC1Q9NW68 430 aaPredicted RBP15.29■□□□□ 0.04
LINC00339-204ENST00000434233 PPP1R1BQ9UD71 204 aaPredicted RBP15.29■□□□□ 0.04
LINC00339-204ENST00000434233 PA2G4Q9UQ80 394 aaKnown RBP15.29■□□□□ 0.04
LINC00339-204ENST00000434233 TAF1P21675 1872 aa15.29■□□□□ 0.04
LINC00339-204ENST00000434233 EYA2O00167 538 aa15.28■□□□□ 0.04
LINC00339-204ENST00000434233 CIAO1O76071 339 aa15.28■□□□□ 0.04
LINC00339-204ENST00000434233 GCC1Q96CN9 775 aa15.28■□□□□ 0.04
LINC00339-204ENST00000434233 CCDC136Q96JN2 1154 aa15.28■□□□□ 0.04
LINC00339-204ENST00000434233 RIPOR2Q9Y4F9 1068 aa15.28■□□□□ 0.04
LINC00339-204ENST00000434233 RAB11FIP3O75154 756 aa15.27■□□□□ 0.04
LINC00339-204ENST00000434233 KLHL34Q8N239 644 aa15.27■□□□□ 0.04
LINC00339-204ENST00000434233 TTLL6Q8N841 843 aa15.27■□□□□ 0.04
LINC00339-204ENST00000434233 PUS3Q9BZE2 481 aaKnown RBP15.27■□□□□ 0.04
LINC00339-204ENST00000434233 PIM2Q9P1W9 311 aa15.27■□□□□ 0.04
LINC00339-204ENST00000434233 GTF3C3Q9Y5Q9 886 aa15.27■□□□□ 0.04
LINC00339-204ENST00000434233 IL15P40933 162 aaPredicted RBP15.26■□□□□ 0.03
LINC00339-204ENST00000434233 LRRC24Q50LG9 513 aa15.26■□□□□ 0.03
LINC00339-204ENST00000434233 ATG9AQ7Z3C6 839 aa15.26■□□□□ 0.03
LINC00339-204ENST00000434233 SP8Q8IXZ3 490 aa15.26■□□□□ 0.03
LINC00339-204ENST00000434233 SMC5Q8IY18 1101 aa15.26■□□□□ 0.03
LINC00339-204ENST00000434233 SYT17Q9BSW7 474 aa15.26■□□□□ 0.03
LINC00339-204ENST00000434233 FHDC1Q9C0D6 1143 aaPredicted RBP15.26■□□□□ 0.03
LINC00339-204ENST00000434233 CNNM1Q9NRU3 951 aa15.26■□□□□ 0.03
LINC00339-204ENST00000434233 DLEC1Q9Y238 1755 aa15.26■□□□□ 0.03
LINC00339-204ENST00000434233 COL11A2P13942 1736 aaPredicted RBP15.26■□□□□ 0.03
LINC00339-204ENST00000434233 KIAA1551Q9HCM1 1747 aa15.26■□□□□ 0.03
LINC00339-204ENST00000434233 ERC1Q8IUD2 1116 aa15.25■□□□□ 0.03
LINC00339-204ENST00000434233 SIL1Q9H173 461 aa15.25■□□□□ 0.03
LINC00339-204ENST00000434233 EXOC6BQ9Y2D4 811 aa15.25■□□□□ 0.03
Retrieved 100 of 20,778 RNA–protein pairs in 167.1 ms