RNA–Protein interactions for RNA: ENST00000430158.5

USP40-205, Transcript of ubiquitin specific peptidase 40, humanhuman

TSL 3

Gene USP40, Length 1,047 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-205ENST00000430158 PDZRN3Q9UPQ7 1066 aa15.76■□□□□ 0.11
USP40-205ENST00000430158 MYH3P11055 1940 aa15.76■□□□□ 0.11
USP40-205ENST00000430158 TAF1P21675 1872 aa15.76■□□□□ 0.11
USP40-205ENST00000430158 SLX4Q8IY92 1834 aa15.75■□□□□ 0.11
USP40-205ENST00000430158 IRS4O14654 1257 aaPredicted RBP15.75■□□□□ 0.11
USP40-205ENST00000430158 RLBP1P12271 317 aa15.75■□□□□ 0.11
USP40-205ENST00000430158 GTF2E1P29083 439 aaPredicted RBP15.75■□□□□ 0.11
USP40-205ENST00000430158 HOXA10P31260 410 aaPredicted RBP15.75■□□□□ 0.11
USP40-205ENST00000430158 SF3B3Q15393 1217 aaKnown RBP15.75■□□□□ 0.11
USP40-205ENST00000430158 ZKSCAN2Q63HK3 967 aa15.75■□□□□ 0.11
USP40-205ENST00000430158 PLA2G12BQ9BX93 195 aa15.75■□□□□ 0.11
USP40-205ENST00000430158 USP44Q9H0E7 712 aa15.75■□□□□ 0.11
USP40-205ENST00000430158 ARFGEF1Q9Y6D6 1849 aa15.74■□□□□ 0.11
USP40-205ENST00000430158 RTL5Q5HYW3 569 aaPredicted RBP15.74■□□□□ 0.11
USP40-205ENST00000430158 STYK1Q6J9G0 422 aa15.74■□□□□ 0.11
USP40-205ENST00000430158 UBE3BQ7Z3V4 1068 aa15.74■□□□□ 0.11
USP40-205ENST00000430158 FRAT1Q92837 279 aaPredicted RBP15.74■□□□□ 0.11
USP40-205ENST00000430158 KAZALD1Q96I82 304 aa15.74■□□□□ 0.11
USP40-205ENST00000430158 COL4A1P02462 1669 aa15.73■□□□□ 0.11
USP40-205ENST00000430158 H0YIN7 160 aa15.73■□□□□ 0.11
USP40-205ENST00000430158 GRM8O00222 908 aa15.73■□□□□ 0.11
USP40-205ENST00000430158 NBPF7P0C2Y1 421 aaPredicted RBP15.73■□□□□ 0.11
USP40-205ENST00000430158 CCT4P50991 539 aaKnown RBP15.73■□□□□ 0.11
USP40-205ENST00000430158 MASTLQ96GX5 879 aa15.73■□□□□ 0.11
USP40-205ENST00000430158 NLRP3Q96P20 1036 aa15.73■□□□□ 0.11
USP40-205ENST00000430158 NPHP1O15259 732 aa15.72■□□□□ 0.11
USP40-205ENST00000430158 PDE8AO60658 829 aa15.72■□□□□ 0.11
USP40-205ENST00000430158 GABBR2O75899 941 aa15.72■□□□□ 0.11
USP40-205ENST00000430158 NPR1P16066 1061 aa15.72■□□□□ 0.11
USP40-205ENST00000430158 YBX3P16989 372 aaKnown RBP eCLIP15.72■□□□□ 0.11
USP40-205ENST00000430158 EPHA10Q5JZY3 1008 aa15.72■□□□□ 0.11
USP40-205ENST00000430158 PIM2Q9P1W9 311 aa15.72■□□□□ 0.11
USP40-205ENST00000430158 PLIN1O60240 522 aa15.71■□□□□ 0.11
USP40-205ENST00000430158 CSF1RP07333 972 aa15.71■□□□□ 0.11
USP40-205ENST00000430158 FOXO4P98177 505 aa15.71■□□□□ 0.11
USP40-205ENST00000430158 TMEM57Q8N5G2 664 aa15.71■□□□□ 0.11
USP40-205ENST00000430158 C7orf43Q8WVR3 580 aa15.71■□□□□ 0.11
USP40-205ENST00000430158 CLUAP1Q96AJ1 413 aa15.71■□□□□ 0.11
USP40-205ENST00000430158 CRAMP1Q96RY5 1269 aa15.71■□□□□ 0.11
USP40-205ENST00000430158 CACNA1SQ13698 1873 aa15.71■□□□□ 0.11
USP40-205ENST00000430158 DZIP1LQ8IYY4 767 aaKnown RBP15.7■□□□□ 0.1
USP40-205ENST00000430158 TTLL11Q8NHH1 800 aa15.7■□□□□ 0.1
USP40-205ENST00000430158 UTRNP46939 3433 aa15.7■□□□□ 0.1
USP40-205ENST00000430158 CTSWP56202 376 aa15.69■□□□□ 0.1
USP40-205ENST00000430158 TTLL6Q8N841 843 aa15.69■□□□□ 0.1
USP40-205ENST00000430158 ZNF622Q969S3 477 aaKnown RBP eCLIP15.69■□□□□ 0.1
USP40-205ENST00000430158 SUCLG2Q96I99 432 aa15.69■□□□□ 0.1
USP40-205ENST00000430158 C9orf78Q9NZ63 289 aaPredicted RBP15.69■□□□□ 0.1
USP40-205ENST00000430158 RTL9Q8NET4 1388 aa15.69■□□□□ 0.1
USP40-205ENST00000430158 SNED1Q8TER0 1413 aa15.68■□□□□ 0.1
USP40-205ENST00000430158 DALRD3Q5D0E6 543 aaKnown RBP15.68■□□□□ 0.1
USP40-205ENST00000430158 C20orf194Q5TEA3 1177 aa15.68■□□□□ 0.1
USP40-205ENST00000430158 SLC51AQ86UW1 340 aa15.68■□□□□ 0.1
USP40-205ENST00000430158 ANKRD44Q8N8A2 993 aa15.68■□□□□ 0.1
USP40-205ENST00000430158 PANK1Q8TE04 598 aa15.68■□□□□ 0.1
USP40-205ENST00000430158 CNKSR1Q969H4 720 aa15.68■□□□□ 0.1
USP40-205ENST00000430158 MEIS3Q99687 375 aa15.68■□□□□ 0.1
USP40-205ENST00000430158 WWC3Q9ULE0 1092 aa15.68■□□□□ 0.1
USP40-205ENST00000430158 HSP90B1P14625 803 aaKnown RBP15.67■□□□□ 0.1
USP40-205ENST00000430158 RABL6Q3YEC7 729 aaPredicted RBP15.67■□□□□ 0.1
USP40-205ENST00000430158 CHADLQ6NUI6 762 aa15.67■□□□□ 0.1
USP40-205ENST00000430158 PRPF40BQ6NWY9 871 aaKnown RBP15.67■□□□□ 0.1
USP40-205ENST00000430158 RBM17Q96I25 401 aaKnown RBP15.67■□□□□ 0.1
USP40-205ENST00000430158 SEC31BQ9NQW1 1179 aa15.67■□□□□ 0.1
USP40-205ENST00000430158 FER1L6Q2WGJ9 1857 aa15.66■□□□□ 0.1
USP40-205ENST00000430158 ZBTB7BO15156 539 aaPredicted RBP15.66■□□□□ 0.1
USP40-205ENST00000430158 ALDH1B1P30837 517 aa15.66■□□□□ 0.1
USP40-205ENST00000430158 PDE3AQ14432 1141 aa15.66■□□□□ 0.1
USP40-205ENST00000430158 RPGRQ92834 1020 aaKnown RBP15.66■□□□□ 0.1
USP40-205ENST00000430158 BCS1LQ9Y276 419 aa15.66■□□□□ 0.1
USP40-205ENST00000430158 GRAPQ13588 217 aa15.65■□□□□ 0.1
USP40-205ENST00000430158 GRAPLQ8TC17 118 aaPredicted RBP15.65■□□□□ 0.1
USP40-205ENST00000430158 CELF1Q92879 486 aaKnown RBP15.65■□□□□ 0.1
USP40-205ENST00000430158 GREM2Q9H772 168 aa15.65■□□□□ 0.1
USP40-205ENST00000430158 LRRC37AA6NMS7 1700 aa15.64■□□□□ 0.09
USP40-205ENST00000430158 BBOX1O75936 387 aa15.64■□□□□ 0.09
USP40-205ENST00000430158 SBF1O95248 1867 aa15.64■□□□□ 0.09
USP40-205ENST00000430158 RRP1P56182 461 aaKnown RBP15.64■□□□□ 0.09
USP40-205ENST00000430158 CCDC152Q4G0S7 254 aa15.64■□□□□ 0.09
USP40-205ENST00000430158 LMBR1LQ6UX01 489 aa15.64■□□□□ 0.09
USP40-205ENST00000430158 OLFM4Q6UX06 510 aa15.64■□□□□ 0.09
USP40-205ENST00000430158 DDX46Q7L014 1031 aaKnown RBP15.64■□□□□ 0.09
USP40-205ENST00000430158 CCDC85AQ96PX6 553 aaPredicted RBP15.64■□□□□ 0.09
USP40-205ENST00000430158 BICC1Q9H694 974 aaKnown RBP15.64■□□□□ 0.09
USP40-205ENST00000430158 MS4A1P11836 297 aa15.63■□□□□ 0.09
USP40-205ENST00000430158 GPR162Q16538 588 aa15.63■□□□□ 0.09
USP40-205ENST00000430158 FAM161AQ3B820 660 aa15.63■□□□□ 0.09
USP40-205ENST00000430158 FTSJ3Q8IY81 847 aaKnown RBP15.63■□□□□ 0.09
USP40-205ENST00000430158 C21orf2O43822 256 aa15.62■□□□□ 0.09
USP40-205ENST00000430158 GNAI3P08754 354 aa15.62■□□□□ 0.09
USP40-205ENST00000430158 UBTFL1P0CB47 393 aaPredicted RBP15.62■□□□□ 0.09
USP40-205ENST00000430158 RPS8P62241 208 aaKnown RBP15.62■□□□□ 0.09
USP40-205ENST00000430158 MVPQ14764 893 aaKnown RBP15.62■□□□□ 0.09
USP40-205ENST00000430158 ATP6V0A2Q9Y487 856 aa15.62■□□□□ 0.09
USP40-205ENST00000430158 LRRFIP2Q9Y608 721 aaKnown RBP15.62■□□□□ 0.09
USP40-205ENST00000430158 LTBP1Q14766 1721 aa15.61■□□□□ 0.09
USP40-205ENST00000430158 NFKBIEO00221 500 aa15.61■□□□□ 0.09
USP40-205ENST00000430158 ITGA6P23229 1130 aa15.61■□□□□ 0.09
USP40-205ENST00000430158 RFX5P48382 616 aaPredicted RBP15.61■□□□□ 0.09
USP40-205ENST00000430158 PRELPP51888 382 aa15.61■□□□□ 0.09
Retrieved 100 of 20,778 RNA–protein pairs in 13.6 ms