RNA–Protein interactions for RNA: ENST00000430118.1

HMGB3-203, Transcript of high mobility group box 3, humanhuman

TSL 1 (best)

Gene HMGB3, Length 529 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB3-203ENST00000430118 ORC1Q13415 861 aa6.14□□□□□ -1.43
HMGB3-203ENST00000430118 C8orf34Q49A92 452 aa6.14□□□□□ -1.43
HMGB3-203ENST00000430118 SUSD3Q96L08 255 aa6.14□□□□□ -1.43
HMGB3-203ENST00000430118 AGBL1Q96MI9 1066 aa6.14□□□□□ -1.43
HMGB3-203ENST00000430118 GGNBP2Q9H3C7 697 aa6.14□□□□□ -1.43
HMGB3-203ENST00000430118 C12orf49Q9H741 205 aa6.14□□□□□ -1.43
HMGB3-203ENST00000430118 ZFAND3Q9H8U3 227 aa6.14□□□□□ -1.43
HMGB3-203ENST00000430118 CUEDC1Q9NWM3 386 aaPredicted RBP6.14□□□□□ -1.43
HMGB3-203ENST00000430118 FAM8A1Q9UBU6 413 aa6.14□□□□□ -1.43
HMGB3-203ENST00000430118 PARP3Q9Y6F1 533 aa6.14□□□□□ -1.43
HMGB3-203ENST00000430118 TOP2BQ02880 1626 aa6.14□□□□□ -1.43
HMGB3-203ENST00000430118 TNFRSF21O75509 655 aa6.13□□□□□ -1.43
HMGB3-203ENST00000430118 CTSHP09668 335 aa6.13□□□□□ -1.43
HMGB3-203ENST00000430118 IDH3AP50213 366 aa6.13□□□□□ -1.43
HMGB3-203ENST00000430118 C9orf131Q5VYM1 1079 aa6.13□□□□□ -1.43
HMGB3-203ENST00000430118 HS2ST1Q7LGA3 356 aa6.13□□□□□ -1.43
HMGB3-203ENST00000430118 ZNF654Q8IZM8 581 aa6.13□□□□□ -1.43
HMGB3-203ENST00000430118 SETDB2Q96T68 719 aa6.13□□□□□ -1.43
HMGB3-203ENST00000430118 TANGO6Q9C0B7 1094 aa6.13□□□□□ -1.43
HMGB3-203ENST00000430118 EPB41L3Q9Y2J2 1087 aaPredicted RBP6.13□□□□□ -1.43
HMGB3-203ENST00000430118 USP31Q70CQ4 1352 aa6.13□□□□□ -1.43
HMGB3-203ENST00000430118 ERICH3Q5RHP9 1530 aa6.13□□□□□ -1.43
HMGB3-203ENST00000430118 TTC24A2A3L6 582 aaPredicted RBP6.12□□□□□ -1.43
HMGB3-203ENST00000430118 OPLAHO14841 1288 aa6.12□□□□□ -1.43
HMGB3-203ENST00000430118 UPP2O95045 317 aa6.12□□□□□ -1.43
HMGB3-203ENST00000430118 TSPOAP1O95153 1857 aa6.12□□□□□ -1.43
HMGB3-203ENST00000430118 INPP5BP32019 993 aa6.12□□□□□ -1.43
HMGB3-203ENST00000430118 WRNQ14191 1432 aaPredicted RBP eCLIP6.12□□□□□ -1.43
HMGB3-203ENST00000430118 ZNF787Q6DD87 383 aa6.12□□□□□ -1.43
HMGB3-203ENST00000430118 TEX14Q8IWB6 1497 aa6.12□□□□□ -1.43
HMGB3-203ENST00000430118 CYP4X1Q8N118 509 aa6.12□□□□□ -1.43
HMGB3-203ENST00000430118 PMEPA1Q969W9 287 aa6.12□□□□□ -1.43
HMGB3-203ENST00000430118 CCDC74AQ96AQ1 378 aa6.12□□□□□ -1.43
HMGB3-203ENST00000430118 LMTK3Q96Q04 1460 aa6.12□□□□□ -1.43
HMGB3-203ENST00000430118 ZNF395Q9H8N7 513 aaPredicted RBP6.12□□□□□ -1.43
HMGB3-203ENST00000430118 RNF19AQ9NV58 838 aa6.12□□□□□ -1.43
HMGB3-203ENST00000430118 TOR4AQ9NXH8 423 aa6.12□□□□□ -1.43
HMGB3-203ENST00000430118 DDX41Q9UJV9 622 aaKnown RBP6.12□□□□□ -1.43
HMGB3-203ENST00000430118 ADCY10Q96PN6 1610 aa6.11□□□□□ -1.43
HMGB3-203ENST00000430118 RUSC2Q8N2Y8 1516 aa6.11□□□□□ -1.43
HMGB3-203ENST00000430118 TTBK1Q5TCY1 1321 aaPredicted RBP6.11□□□□□ -1.43
HMGB3-203ENST00000430118 A0A1B0GTH6 734 aa6.11□□□□□ -1.43
HMGB3-203ENST00000430118 GDF9O60383 454 aa6.11□□□□□ -1.43
HMGB3-203ENST00000430118 EGFRP00533 1210 aa6.11□□□□□ -1.43
HMGB3-203ENST00000430118 ATP2B1P20020 1258 aa6.11□□□□□ -1.43
HMGB3-203ENST00000430118 PRR20EP86478 221 aa6.11□□□□□ -1.43
HMGB3-203ENST00000430118 PRR20CP86479 221 aa6.11□□□□□ -1.43
HMGB3-203ENST00000430118 PRR20DP86480 221 aa6.11□□□□□ -1.43
HMGB3-203ENST00000430118 PRR20BP86481 221 aa6.11□□□□□ -1.43
HMGB3-203ENST00000430118 PRR20AP86496 221 aa6.11□□□□□ -1.43
HMGB3-203ENST00000430118 SOGA3Q5TF21 947 aa6.11□□□□□ -1.43
HMGB3-203ENST00000430118 TRIM67Q6ZTA4 783 aa6.11□□□□□ -1.43
HMGB3-203ENST00000430118 ZNF438Q7Z4V0 828 aa6.11□□□□□ -1.43
HMGB3-203ENST00000430118 BTLAQ7Z6A9 289 aa6.11□□□□□ -1.43
HMGB3-203ENST00000430118 FAM177A1Q8N128 213 aaPredicted RBP6.11□□□□□ -1.43
HMGB3-203ENST00000430118 SPATA32Q96LK8 384 aa6.11□□□□□ -1.43
HMGB3-203ENST00000430118 ZFYVE28Q9HCC9 887 aa6.11□□□□□ -1.43
HMGB3-203ENST00000430118 PRKAG2Q9UGJ0 569 aa6.11□□□□□ -1.43
HMGB3-203ENST00000430118 ATP4AP20648 1035 aa6.1□□□□□ -1.43
HMGB3-203ENST00000430118 FOXC1Q12948 553 aa6.1□□□□□ -1.43
HMGB3-203ENST00000430118 TAF1CQ15572 869 aaPredicted RBP6.1□□□□□ -1.43
HMGB3-203ENST00000430118 LARP7Q4G0J3 582 aaKnown RBP eCLIP6.1□□□□□ -1.43
HMGB3-203ENST00000430118 BICDL1Q6ZP65 573 aa6.1□□□□□ -1.43
HMGB3-203ENST00000430118 LINC00528Q8N1L1 170 aa6.1□□□□□ -1.43
HMGB3-203ENST00000430118 ANKRD24Q8TF21 1146 aa6.1□□□□□ -1.43
HMGB3-203ENST00000430118 CAPN10Q9HC96 672 aa6.1□□□□□ -1.43
HMGB3-203ENST00000430118 NEUROD4Q9HD90 331 aa6.1□□□□□ -1.43
HMGB3-203ENST00000430118 RTCBQ9Y3I0 505 aaKnown RBP6.1□□□□□ -1.43
HMGB3-203ENST00000430118 UBAP1LF5GYI3 381 aa6.09□□□□□ -1.43
HMGB3-203ENST00000430118 J3QL48 77 aa6.09□□□□□ -1.43
HMGB3-203ENST00000430118 PHACTR2O75167 634 aa6.09□□□□□ -1.43
HMGB3-203ENST00000430118 SMPD1P17405 629 aa6.09□□□□□ -1.43
HMGB3-203ENST00000430118 ARID5AQ03989 594 aa6.09□□□□□ -1.43
HMGB3-203ENST00000430118 PKDCCQ504Y2 493 aa6.09□□□□□ -1.43
HMGB3-203ENST00000430118 SAMD5Q5TGI4 173 aa6.09□□□□□ -1.43
HMGB3-203ENST00000430118 NOP9Q86U38 636 aaKnown RBP6.09□□□□□ -1.43
HMGB3-203ENST00000430118 USP48Q86UV5 1035 aa6.09□□□□□ -1.43
HMGB3-203ENST00000430118 VPS37DQ86XT2 251 aa6.09□□□□□ -1.43
HMGB3-203ENST00000430118 GALNT12Q8IXK2 581 aa6.09□□□□□ -1.43
HMGB3-203ENST00000430118 AIDAQ96BJ3 306 aa6.09□□□□□ -1.43
HMGB3-203ENST00000430118 ACBD3Q9H3P7 528 aa6.09□□□□□ -1.43
HMGB3-203ENST00000430118 ELP3Q9H9T3 547 aa6.09□□□□□ -1.43
HMGB3-203ENST00000430118 KCNMB2Q9Y691 235 aa6.09□□□□□ -1.43
HMGB3-203ENST00000430118 GLI2P10070 1586 aa6.09□□□□□ -1.43
HMGB3-203ENST00000430118 PLB1Q6P1J6 1458 aa6.09□□□□□ -1.44
HMGB3-203ENST00000430118 DGAT1O75907 488 aa6.08□□□□□ -1.44
HMGB3-203ENST00000430118 GJA8P48165 433 aa6.08□□□□□ -1.44
HMGB3-203ENST00000430118 LYSMD3Q7Z3D4 306 aa6.08□□□□□ -1.44
HMGB3-203ENST00000430118 ZNF280CQ8ND82 737 aa6.08□□□□□ -1.44
HMGB3-203ENST00000430118 ZIC5Q96T25 663 aa6.08□□□□□ -1.44
HMGB3-203ENST00000430118 INSM2Q96T92 566 aaPredicted RBP6.08□□□□□ -1.44
HMGB3-203ENST00000430118 NOC4LQ9BVI4 516 aaKnown RBP6.08□□□□□ -1.44
HMGB3-203ENST00000430118 OSBPL7Q9BZF2 842 aa6.08□□□□□ -1.44
HMGB3-203ENST00000430118 CRISPLD1Q9H336 500 aa6.08□□□□□ -1.44
HMGB3-203ENST00000430118 POLMQ9NP87 494 aaPredicted RBP6.08□□□□□ -1.44
HMGB3-203ENST00000430118 PPP1R1BQ9UD71 204 aaPredicted RBP6.08□□□□□ -1.44
HMGB3-203ENST00000430118 INPP5FQ9Y2H2 1132 aa6.08□□□□□ -1.44
HMGB3-203ENST00000430118 A6NHS1 94 aa6.07□□□□□ -1.44
HMGB3-203ENST00000430118 VEGFBP49765 207 aa6.07□□□□□ -1.44
HMGB3-203ENST00000430118 TYRO3Q06418 890 aa6.07□□□□□ -1.44
Retrieved 100 of 20,778 RNA–protein pairs in 17.5 ms