RNA–Protein interactions for RNA: ENST00000427947.7

USP40-204, Transcript of ubiquitin specific peptidase 40, humanhuman

TSL 2

Gene USP40, Length 794 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-204ENST00000427947 CNTNAP3Q9BZ76 1288 aa7.28□□□□□ -1.24
USP40-204ENST00000427947 ELP3Q9H9T3 547 aa7.28□□□□□ -1.24
USP40-204ENST00000427947 ABI2Q9NYB9 513 aaPredicted RBP7.28□□□□□ -1.24
USP40-204ENST00000427947 IGF1RP08069 1367 aa7.28□□□□□ -1.24
USP40-204ENST00000427947 ANKRD33BA6NCL7 494 aa7.27□□□□□ -1.25
USP40-204ENST00000427947 IGHA2P01877 340 aa7.27□□□□□ -1.25
USP40-204ENST00000427947 MAP2K3P46734 347 aa7.27□□□□□ -1.25
USP40-204ENST00000427947 PCBP4P57723 403 aaKnown RBP7.27□□□□□ -1.25
USP40-204ENST00000427947 ZNF468Q5VIY5 522 aaPredicted RBP7.27□□□□□ -1.25
USP40-204ENST00000427947 SYT9Q86SS6 491 aa7.27□□□□□ -1.25
USP40-204ENST00000427947 TMEM63CQ9P1W3 806 aa7.27□□□□□ -1.25
USP40-204ENST00000427947 ZFATQ9P243 1243 aa7.27□□□□□ -1.25
USP40-204ENST00000427947 GMPRP36959 345 aa7.26□□□□□ -1.25
USP40-204ENST00000427947 XKR5Q6UX68 686 aa7.26□□□□□ -1.25
USP40-204ENST00000427947 NIF3L1Q9GZT8 377 aa7.26□□□□□ -1.25
USP40-204ENST00000427947 EFCC1Q9HA90 598 aa7.26□□□□□ -1.25
USP40-204ENST00000427947 FOXD3Q9UJU5 478 aaPredicted RBP7.26□□□□□ -1.25
USP40-204ENST00000427947 TREHO43280 583 aa7.25□□□□□ -1.25
USP40-204ENST00000427947 MMP20O60882 483 aa7.25□□□□□ -1.25
USP40-204ENST00000427947 TNFRSF21O75509 655 aa7.25□□□□□ -1.25
USP40-204ENST00000427947 SRSF11Q05519 484 aaKnown RBP7.25□□□□□ -1.25
USP40-204ENST00000427947 TBC1D8BQ0IIM8 1120 aa7.25□□□□□ -1.25
USP40-204ENST00000427947 TTC39BQ5VTQ0 682 aaPredicted RBP7.25□□□□□ -1.25
USP40-204ENST00000427947 TREML4Q6UXN2 200 aa7.25□□□□□ -1.25
USP40-204ENST00000427947 SNX29Q8TEQ0 813 aa7.25□□□□□ -1.25
USP40-204ENST00000427947 ALKBH8Q96BT7 664 aaKnown RBP7.25□□□□□ -1.25
USP40-204ENST00000427947 IGFLR1Q9H665 355 aa7.25□□□□□ -1.25
USP40-204ENST00000427947 AVENQ9NQS1 362 aaPredicted RBP7.25□□□□□ -1.25
USP40-204ENST00000427947 PHACTR2O75167 634 aa7.24□□□□□ -1.25
USP40-204ENST00000427947 SIN3BO75182 1162 aa7.24□□□□□ -1.25
USP40-204ENST00000427947 ADAMTS2O95450 1211 aa7.24□□□□□ -1.25
USP40-204ENST00000427947 ARAFP10398 606 aa7.24□□□□□ -1.25
USP40-204ENST00000427947 ADH6P28332 368 aa7.24□□□□□ -1.25
USP40-204ENST00000427947 ORC1Q13415 861 aa7.24□□□□□ -1.25
USP40-204ENST00000427947 DHX32Q7L7V1 743 aaKnown RBP7.24□□□□□ -1.25
USP40-204ENST00000427947 UBE2OQ9C0C9 1292 aaKnown RBP7.24□□□□□ -1.25
USP40-204ENST00000427947 NEURL1BA8MQ27 555 aa7.23□□□□□ -1.25
USP40-204ENST00000427947 MAP3K6O95382 1288 aa7.23□□□□□ -1.25
USP40-204ENST00000427947 PSAPP07602 524 aa7.23□□□□□ -1.25
USP40-204ENST00000427947 ERCC3P19447 782 aa7.23□□□□□ -1.25
USP40-204ENST00000427947 MAPK8P45983 427 aa7.23□□□□□ -1.25
USP40-204ENST00000427947 PLCB3Q01970 1234 aa7.23□□□□□ -1.25
USP40-204ENST00000427947 DSC3Q14574 896 aa7.23□□□□□ -1.25
USP40-204ENST00000427947 NPAS4Q8IUM7 802 aa7.23□□□□□ -1.25
USP40-204ENST00000427947 C1orf127Q8N9H9 656 aa7.23□□□□□ -1.25
USP40-204ENST00000427947 OXCT2Q9BYC2 517 aaPredicted RBP7.23□□□□□ -1.25
USP40-204ENST00000427947 TLR7Q9NYK1 1049 aaKnown RBP7.23□□□□□ -1.25
USP40-204ENST00000427947 CNTN3Q9P232 1028 aa7.23□□□□□ -1.25
USP40-204ENST00000427947 KANSL3Q9P2N6 904 aa7.23□□□□□ -1.25
USP40-204ENST00000427947 KLF15Q9UIH9 416 aa7.23□□□□□ -1.25
USP40-204ENST00000427947 GGA1Q9UJY5 639 aa7.23□□□□□ -1.25
USP40-204ENST00000427947 PHF20L1A8MW92 1017 aa7.22□□□□□ -1.25
USP40-204ENST00000427947 CYP2E1P05181 493 aaPredicted RBP7.22□□□□□ -1.25
USP40-204ENST00000427947 NEFLP07196 543 aa7.22□□□□□ -1.25
USP40-204ENST00000427947 P4HBP07237 508 aaKnown RBP7.22□□□□□ -1.25
USP40-204ENST00000427947 PLAURQ03405 335 aa7.22□□□□□ -1.25
USP40-204ENST00000427947 FMR1Q06787 632 aaKnown RBP eCLIP7.22□□□□□ -1.25
USP40-204ENST00000427947 FCHSD1Q86WN1 690 aa7.22□□□□□ -1.25
USP40-204ENST00000427947 GOLGA6L1Q8N7Z2 621 aa7.22□□□□□ -1.25
USP40-204ENST00000427947 OR13H1Q8NG92 308 aa7.22□□□□□ -1.25
USP40-204ENST00000427947 EREGO14944 169 aa7.21□□□□□ -1.26
USP40-204ENST00000427947 CES1P23141 567 aa7.21□□□□□ -1.26
USP40-204ENST00000427947 SOX18P35713 384 aa7.21□□□□□ -1.26
USP40-204ENST00000427947 LCE2AQ5TA79 106 aaPredicted RBP7.21□□□□□ -1.26
USP40-204ENST00000427947 TNFRSF25Q93038 417 aa7.21□□□□□ -1.26
USP40-204ENST00000427947 ACDQ96AP0 544 aa7.21□□□□□ -1.26
USP40-204ENST00000427947 NSUN5Q96P11 429 aaKnown RBP7.21□□□□□ -1.26
USP40-204ENST00000427947 CHRDQ9H2X0 955 aa7.21□□□□□ -1.26
USP40-204ENST00000427947 DNAJB12Q9NXW2 375 aaKnown RBP7.21□□□□□ -1.26
USP40-204ENST00000427947 GDF2Q9UK05 429 aaPredicted RBP7.21□□□□□ -1.26
USP40-204ENST00000427947 PNMA6FA0A0J9YX94 578 aa7.2□□□□□ -1.26
USP40-204ENST00000427947 EIF1AYO14602 144 aaKnown RBP7.2□□□□□ -1.26
USP40-204ENST00000427947 CPNE3O75131 537 aaKnown RBP7.2□□□□□ -1.26
USP40-204ENST00000427947 SLURP2P0DP57 97 aa7.2□□□□□ -1.26
USP40-204ENST00000427947 NRLP54845 237 aa7.2□□□□□ -1.26
USP40-204ENST00000427947 MLLT1Q03111 559 aaPredicted RBP7.2□□□□□ -1.26
USP40-204ENST00000427947 EAPPQ56P03 285 aaPredicted RBP7.2□□□□□ -1.26
USP40-204ENST00000427947 USPL1Q5W0Q7 1092 aa7.2□□□□□ -1.26
USP40-204ENST00000427947 SLCO4C1Q6ZQN7 724 aa7.2□□□□□ -1.26
USP40-204ENST00000427947 CSRNP1Q96S65 589 aa7.2□□□□□ -1.26
USP40-204ENST00000427947 ZFYVE28Q9HCC9 887 aa7.2□□□□□ -1.26
USP40-204ENST00000427947 AMOTL2Q9Y2J4 779 aa7.2□□□□□ -1.26
USP40-204ENST00000427947 ADH7P40394 386 aa7.19□□□□□ -1.26
USP40-204ENST00000427947 GPLD1P80108 840 aa7.19□□□□□ -1.26
USP40-204ENST00000427947 HFE2Q6ZVN8 426 aa7.19□□□□□ -1.26
USP40-204ENST00000427947 RGS22Q8NE09 1264 aa7.19□□□□□ -1.26
USP40-204ENST00000427947 TRPM4Q8TD43 1214 aa7.19□□□□□ -1.26
USP40-204ENST00000427947 PMEPA1Q969W9 287 aa7.19□□□□□ -1.26
USP40-204ENST00000427947 DNAJC25Q9H1X3 360 aa7.19□□□□□ -1.26
USP40-204ENST00000427947 SLC6A14Q9UN76 642 aa7.19□□□□□ -1.26
USP40-204ENST00000427947 ADARB2-AS1A8MUL3 147 aa7.18□□□□□ -1.26
USP40-204ENST00000427947 ZBTB42B2RXF5 422 aa7.18□□□□□ -1.26
USP40-204ENST00000427947 POLR3DP05423 398 aaPredicted RBP7.18□□□□□ -1.26
USP40-204ENST00000427947 EPXP11678 715 aa7.18□□□□□ -1.26
USP40-204ENST00000427947 HYAL2Q12891 473 aa7.18□□□□□ -1.26
USP40-204ENST00000427947 COL19A1Q14993 1142 aa7.18□□□□□ -1.26
USP40-204ENST00000427947 ENOX2Q16206 610 aaKnown RBP7.18□□□□□ -1.26
USP40-204ENST00000427947 PCSK7Q16549 785 aa7.18□□□□□ -1.26
USP40-204ENST00000427947 COL13A1Q5TAT6 717 aaPredicted RBP7.18□□□□□ -1.26
USP40-204ENST00000427947 NCAPG2Q86XI2 1143 aa7.18□□□□□ -1.26
Retrieved 100 of 20,778 RNA–protein pairs in 19.7 ms