RNA–Protein interactions for RNA: ENST00000425428.6

CD44-207, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 1 (best)

Gene CD44, Length 1,768 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-207ENST00000425428 RBM17Q96I25 401 aaKnown RBP12.54□□□□□ -0.4
CD44-207ENST00000425428 PPP1R1BQ9UD71 204 aaPredicted RBP12.54□□□□□ -0.4
CD44-207ENST00000425428 H0YIN7 160 aa12.53□□□□□ -0.4
CD44-207ENST00000425428 IGHMBP2P38935 993 aaKnown RBP12.53□□□□□ -0.4
CD44-207ENST00000425428 CASP7P55210 303 aa12.53□□□□□ -0.4
CD44-207ENST00000425428 G3BP1Q13283 466 aaKnown RBP eCLIP12.53□□□□□ -0.4
CD44-207ENST00000425428 CEP85Q6P2H3 762 aa12.53□□□□□ -0.4
CD44-207ENST00000425428 MPHOSPH8Q99549 860 aa12.53□□□□□ -0.4
CD44-207ENST00000425428 RABL6Q3YEC7 729 aaPredicted RBP12.53□□□□□ -0.4
CD44-207ENST00000425428 KLHL34Q8N239 644 aa12.53□□□□□ -0.4
CD44-207ENST00000425428 PDGFDQ9GZP0 370 aaPredicted RBP12.53□□□□□ -0.4
CD44-207ENST00000425428 RIC1Q4ADV7 1423 aa12.53□□□□□ -0.4
CD44-207ENST00000425428 DDX60Q8IY21 1712 aaKnown RBP12.52□□□□□ -0.4
CD44-207ENST00000425428 ALDH1B1P30837 517 aa12.52□□□□□ -0.41
CD44-207ENST00000425428 FOXO4P98177 505 aa12.52□□□□□ -0.41
CD44-207ENST00000425428 MTX1Q13505 466 aa12.52□□□□□ -0.41
CD44-207ENST00000425428 SF3B3Q15393 1217 aaKnown RBP12.52□□□□□ -0.41
CD44-207ENST00000425428 ERC1Q8IUD2 1116 aa12.52□□□□□ -0.41
CD44-207ENST00000425428 ANKRD18AQ8IVF6 992 aa12.52□□□□□ -0.41
CD44-207ENST00000425428 TTLL11Q8NHH1 800 aa12.52□□□□□ -0.41
CD44-207ENST00000425428 GCC1Q96CN9 775 aa12.52□□□□□ -0.41
CD44-207ENST00000425428 NRXN2Q9P2S2 1712 aa12.52□□□□□ -0.41
CD44-207ENST00000425428 CSF1RP07333 972 aa12.51□□□□□ -0.41
CD44-207ENST00000425428 ITGA6P23229 1130 aa12.51□□□□□ -0.41
CD44-207ENST00000425428 HDAC1Q13547 482 aaPredicted RBP12.51□□□□□ -0.41
CD44-207ENST00000425428 SYNE4Q8N205 404 aa12.51□□□□□ -0.41
CD44-207ENST00000425428 CCDC24Q8N4L8 307 aa12.51□□□□□ -0.41
CD44-207ENST00000425428 CCDC85AQ96PX6 553 aaPredicted RBP12.51□□□□□ -0.41
CD44-207ENST00000425428 CNNM1Q9NRU3 951 aa12.51□□□□□ -0.41
CD44-207ENST00000425428 SURF6O75683 361 aaKnown RBP12.51□□□□□ -0.41
CD44-207ENST00000425428 NPR1P16066 1061 aa12.51□□□□□ -0.41
CD44-207ENST00000425428 C2CD5Q86YS7 1000 aa12.51□□□□□ -0.41
CD44-207ENST00000425428 FBXO3Q9UK99 471 aa12.51□□□□□ -0.41
CD44-207ENST00000425428 PCDHB15Q9Y5E8 787 aa12.51□□□□□ -0.41
CD44-207ENST00000425428 RAB11FIP3O75154 756 aa12.5□□□□□ -0.41
CD44-207ENST00000425428 FAM161AQ3B820 660 aa12.5□□□□□ -0.41
CD44-207ENST00000425428 CENPQQ7L2Z9 268 aaPredicted RBP12.5□□□□□ -0.41
CD44-207ENST00000425428 TMC4Q7Z404 712 aa12.5□□□□□ -0.41
CD44-207ENST00000425428 SSH3Q8TE77 659 aa12.5□□□□□ -0.41
CD44-207ENST00000425428 ZNF622Q969S3 477 aaKnown RBP eCLIP12.5□□□□□ -0.41
CD44-207ENST00000425428 MASTLQ96GX5 879 aa12.5□□□□□ -0.41
CD44-207ENST00000425428 RTL9Q8NET4 1388 aa12.5□□□□□ -0.41
CD44-207ENST00000425428 ABCC12Q96J65 1359 aa12.5□□□□□ -0.41
CD44-207ENST00000425428 TGFB2P61812 414 aa12.49□□□□□ -0.41
CD44-207ENST00000425428 EPHA10Q5JZY3 1008 aa12.49□□□□□ -0.41
CD44-207ENST00000425428 LDHAL6AQ6ZMR3 332 aa12.49□□□□□ -0.41
CD44-207ENST00000425428 CNKSR1Q969H4 720 aa12.49□□□□□ -0.41
CD44-207ENST00000425428 GREM2Q9H772 168 aa12.49□□□□□ -0.41
CD44-207ENST00000425428 PNMA6EA0A0J9YXQ4 647 aa12.48□□□□□ -0.41
CD44-207ENST00000425428 BBOX1O75936 387 aa12.48□□□□□ -0.41
CD44-207ENST00000425428 POLA2Q14181 598 aa12.48□□□□□ -0.41
CD44-207ENST00000425428 KAZALD1Q96I82 304 aa12.48□□□□□ -0.41
CD44-207ENST00000425428 CD2APQ9Y5K6 639 aa12.48□□□□□ -0.41
CD44-207ENST00000425428 IL15P40933 162 aaPredicted RBP12.48□□□□□ -0.41
CD44-207ENST00000425428 RPS8P62241 208 aaKnown RBP12.48□□□□□ -0.41
CD44-207ENST00000425428 GRAPQ13588 217 aa12.48□□□□□ -0.41
CD44-207ENST00000425428 STYK1Q6J9G0 422 aa12.48□□□□□ -0.41
CD44-207ENST00000425428 GRAPLQ8TC17 118 aaPredicted RBP12.48□□□□□ -0.41
CD44-207ENST00000425428 CRAMP1Q96RY5 1269 aa12.48□□□□□ -0.41
CD44-207ENST00000425428 COPRSQ9NQ92 184 aa12.48□□□□□ -0.41
CD44-207ENST00000425428 CRY2Q49AN0 593 aa12.47□□□□□ -0.41
CD44-207ENST00000425428 B4GALNT3Q6L9W6 998 aa12.47□□□□□ -0.41
CD44-207ENST00000425428 SIL1Q9H173 461 aa12.47□□□□□ -0.41
CD44-207ENST00000425428 ANKRD31Q8N7Z5 1873 aa12.47□□□□□ -0.41
CD44-207ENST00000425428 KLRG2A4D1S0 409 aaPredicted RBP12.46□□□□□ -0.41
CD44-207ENST00000425428 EYA2O00167 538 aa12.46□□□□□ -0.41
CD44-207ENST00000425428 CIAO1O76071 339 aa12.46□□□□□ -0.41
CD44-207ENST00000425428 SRGNP10124 158 aa12.46□□□□□ -0.41
CD44-207ENST00000425428 KIF1BPQ96EK5 621 aa12.46□□□□□ -0.41
CD44-207ENST00000425428 LRRCC1Q9C099 1032 aa12.46□□□□□ -0.41
CD44-207ENST00000425428 ANKRD2Q9GZV1 360 aa12.46□□□□□ -0.41
CD44-207ENST00000425428 DCTPP1Q9H773 170 aa12.46□□□□□ -0.41
CD44-207ENST00000425428 CEP126Q9P2H0 1117 aa12.46□□□□□ -0.41
CD44-207ENST00000425428 AKAP2Q9Y2D5 859 aa12.46□□□□□ -0.41
CD44-207ENST00000425428 MROH5Q6ZUA9 1318 aa12.46□□□□□ -0.41
CD44-207ENST00000425428 C10orf71Q711Q0 1435 aa12.46□□□□□ -0.41
CD44-207ENST00000425428 SPEF2Q9C093 1822 aa12.46□□□□□ -0.41
CD44-207ENST00000425428 APBB1O00213 710 aa12.46□□□□□ -0.42
CD44-207ENST00000425428 HOXA10P31260 410 aaPredicted RBP12.46□□□□□ -0.42
CD44-207ENST00000425428 KCNJ4P48050 445 aa12.46□□□□□ -0.42
CD44-207ENST00000425428 PTPN12Q05209 780 aaKnown RBP12.46□□□□□ -0.42
CD44-207ENST00000425428 METTL24Q5JXM2 366 aa12.46□□□□□ -0.42
CD44-207ENST00000425428 BSDC1Q9NW68 430 aaPredicted RBP12.46□□□□□ -0.42
CD44-207ENST00000425428 PIM2Q9P1W9 311 aa12.46□□□□□ -0.42
CD44-207ENST00000425428 KIF13BQ9NQT8 1826 aa12.45□□□□□ -0.42
CD44-207ENST00000425428 GRIPAP1Q4V328 841 aa12.45□□□□□ -0.42
CD44-207ENST00000425428 SOGA3Q5TF21 947 aa12.45□□□□□ -0.42
CD44-207ENST00000425428 ANKRD45Q5TZF3 282 aa12.45□□□□□ -0.42
CD44-207ENST00000425428 CLASRPQ8N2M8 674 aaKnown RBP12.45□□□□□ -0.42
CD44-207ENST00000425428 BCL11AQ9H165 835 aa12.45□□□□□ -0.42
CD44-207ENST00000425428 SEC31BQ9NQW1 1179 aa12.45□□□□□ -0.42
CD44-207ENST00000425428 EXOC6BQ9Y2D4 811 aa12.45□□□□□ -0.42
CD44-207ENST00000425428 NOP58Q9Y2X3 529 aaKnown RBP12.45□□□□□ -0.42
CD44-207ENST00000425428 CACNA1SQ13698 1873 aa12.45□□□□□ -0.42
CD44-207ENST00000425428 TNRC6CQ9HCJ0 1690 aaKnown RBP12.44□□□□□ -0.42
CD44-207ENST00000425428 PPEF1O14829 653 aaPredicted RBP12.44□□□□□ -0.42
CD44-207ENST00000425428 PTGER2P43116 358 aa12.44□□□□□ -0.42
CD44-207ENST00000425428 SIRT2Q8IXJ6 389 aa12.44□□□□□ -0.42
CD44-207ENST00000425428 TTLL6Q8N841 843 aa12.44□□□□□ -0.42
CD44-207ENST00000425428 GPATCH3Q96I76 525 aa12.44□□□□□ -0.42
Retrieved 100 of 20,778 RNA–protein pairs in 12.2 ms