RNA–Protein interactions for RNA: ENST00000423463.6

VPS13A-208, Transcript of vacuolar protein sorting 13 homolog A, humanhuman

TSL 2

Gene VPS13A, Length 2,702 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13A-208ENST00000423463 TUT1Q9H6E5 874 aaKnown RBP4.14□□□□□ -1.75
VPS13A-208ENST00000423463 SYNJ1O43426 1573 aa4.14□□□□□ -1.75
VPS13A-208ENST00000423463 GRIN2BQ13224 1484 aa4.14□□□□□ -1.75
VPS13A-208ENST00000423463 A6NHS1 94 aa4.14□□□□□ -1.75
VPS13A-208ENST00000423463 ADH6P28332 368 aa4.14□□□□□ -1.75
VPS13A-208ENST00000423463 KCNQ4P56696 695 aa4.14□□□□□ -1.75
VPS13A-208ENST00000423463 LAMC2Q13753 1193 aa4.14□□□□□ -1.75
VPS13A-208ENST00000423463 KCNMB2Q9Y691 235 aa4.14□□□□□ -1.75
VPS13A-208ENST00000423463 GAPVD1Q14C86 1478 aa4.13□□□□□ -1.75
VPS13A-208ENST00000423463 SASH3O75995 380 aa4.13□□□□□ -1.75
VPS13A-208ENST00000423463 ARAFP10398 606 aa4.13□□□□□ -1.75
VPS13A-208ENST00000423463 EPB42P16452 691 aa4.13□□□□□ -1.75
VPS13A-208ENST00000423463 EIF1AXP47813 144 aaKnown RBP4.13□□□□□ -1.75
VPS13A-208ENST00000423463 MAP3K10Q02779 954 aa4.13□□□□□ -1.75
VPS13A-208ENST00000423463 DNM1Q05193 864 aaKnown RBP4.13□□□□□ -1.75
VPS13A-208ENST00000423463 PNMA5Q96PV4 448 aa4.13□□□□□ -1.75
VPS13A-208ENST00000423463 GSX2Q9BZM3 304 aa4.13□□□□□ -1.75
VPS13A-208ENST00000423463 ZFATQ9P243 1243 aa4.13□□□□□ -1.75
VPS13A-208ENST00000423463 EIF4G3O43432 1585 aaKnown RBP4.13□□□□□ -1.75
VPS13A-208ENST00000423463 OIP5O43482 229 aa4.13□□□□□ -1.75
VPS13A-208ENST00000423463 XYLBO75191 536 aa4.13□□□□□ -1.75
VPS13A-208ENST00000423463 BCRP11274 1271 aa4.13□□□□□ -1.75
VPS13A-208ENST00000423463 AAMPQ13685 434 aa4.13□□□□□ -1.75
VPS13A-208ENST00000423463 SLCO4C1Q6ZQN7 724 aa4.13□□□□□ -1.75
VPS13A-208ENST00000423463 GOLGA6L1Q8N7Z2 621 aa4.13□□□□□ -1.75
VPS13A-208ENST00000423463 NUDT16Q96DE0 195 aaKnown RBP4.13□□□□□ -1.75
VPS13A-208ENST00000423463 EPXP11678 715 aa4.12□□□□□ -1.75
VPS13A-208ENST00000423463 AMPD1P23109 780 aa4.12□□□□□ -1.75
VPS13A-208ENST00000423463 B4GALNT3Q6L9W6 998 aa4.12□□□□□ -1.75
VPS13A-208ENST00000423463 NEDD1Q8NHV4 660 aa4.12□□□□□ -1.75
VPS13A-208ENST00000423463 EDARADDQ8WWZ3 215 aa4.12□□□□□ -1.75
VPS13A-208ENST00000423463 GDF2Q9UK05 429 aaPredicted RBP4.12□□□□□ -1.75
VPS13A-208ENST00000423463 MAGI1Q96QZ7 1491 aaPredicted RBP4.12□□□□□ -1.75
VPS13A-208ENST00000423463 ARID4AP29374 1257 aaPredicted RBP4.12□□□□□ -1.75
VPS13A-208ENST00000423463 MLLT1Q03111 559 aaPredicted RBP4.12□□□□□ -1.75
VPS13A-208ENST00000423463 CCINQ13939 588 aa4.12□□□□□ -1.75
VPS13A-208ENST00000423463 GLYCTKQ8IVS8 523 aa4.12□□□□□ -1.75
VPS13A-208ENST00000423463 ABTB2Q8N961 1025 aa4.12□□□□□ -1.75
VPS13A-208ENST00000423463 EDEM1Q92611 657 aa4.12□□□□□ -1.75
VPS13A-208ENST00000423463 ARHGEF15O94989 841 aa4.11□□□□□ -1.75
VPS13A-208ENST00000423463 RARAP10276 462 aa4.11□□□□□ -1.75
VPS13A-208ENST00000423463 SNRPNP63162 240 aaKnown RBP4.11□□□□□ -1.75
VPS13A-208ENST00000423463 TXNDC2Q86VQ3 553 aa4.11□□□□□ -1.75
VPS13A-208ENST00000423463 UBE2OQ9C0C9 1292 aaKnown RBP4.11□□□□□ -1.75
VPS13A-208ENST00000423463 CCDC87Q9NVE4 849 aa4.11□□□□□ -1.75
VPS13A-208ENST00000423463 ADAMTS8Q9UP79 889 aa4.11□□□□□ -1.75
VPS13A-208ENST00000423463 MTMR7Q9Y216 660 aa4.11□□□□□ -1.75
VPS13A-208ENST00000423463 GTF3C5Q9Y5Q8 519 aaPredicted RBP4.11□□□□□ -1.75
VPS13A-208ENST00000423463 SNAPC4Q5SXM2 1469 aa4.11□□□□□ -1.75
VPS13A-208ENST00000423463 UBAP1LF5GYI3 381 aa4.11□□□□□ -1.75
VPS13A-208ENST00000423463 BRD1O95696 1058 aa4.11□□□□□ -1.75
VPS13A-208ENST00000423463 FKBP4Q02790 459 aaKnown RBP eCLIP4.11□□□□□ -1.75
VPS13A-208ENST00000423463 C8orf34Q49A92 452 aa4.11□□□□□ -1.75
VPS13A-208ENST00000423463 NOM1Q5C9Z4 860 aaKnown RBP4.11□□□□□ -1.75
VPS13A-208ENST00000423463 RRAGCQ9HB90 399 aa4.11□□□□□ -1.75
VPS13A-208ENST00000423463 NAGPAQ9UK23 515 aa4.11□□□□□ -1.75
VPS13A-208ENST00000423463 KIF27Q86VH2 1401 aa4.11□□□□□ -1.75
VPS13A-208ENST00000423463 ADH7P40394 386 aa4.1□□□□□ -1.75
VPS13A-208ENST00000423463 NEUROD1Q13562 356 aa4.1□□□□□ -1.75
VPS13A-208ENST00000423463 HFE2Q6ZVN8 426 aa4.1□□□□□ -1.75
VPS13A-208ENST00000423463 AEBP1Q8IUX7 1158 aa4.1□□□□□ -1.75
VPS13A-208ENST00000423463 NSUN5Q96P11 429 aaKnown RBP4.1□□□□□ -1.75
VPS13A-208ENST00000423463 POLIQ9UNA4 740 aa4.1□□□□□ -1.75
VPS13A-208ENST00000423463 IVNS1ABPQ9Y6Y0 642 aa4.1□□□□□ -1.75
VPS13A-208ENST00000423463 SYNJ2O15056 1496 aa4.1□□□□□ -1.75
VPS13A-208ENST00000423463 ABCA5Q8WWZ7 1642 aa4.1□□□□□ -1.75
VPS13A-208ENST00000423463 ICMTO60725 284 aa4.1□□□□□ -1.75
VPS13A-208ENST00000423463 SIN3BO75182 1162 aa4.1□□□□□ -1.75
VPS13A-208ENST00000423463 C8orf86Q6ZUL3 223 aa4.1□□□□□ -1.75
VPS13A-208ENST00000423463 CHSY3Q70JA7 882 aa4.1□□□□□ -1.75
VPS13A-208ENST00000423463 PIK3R5Q8WYR1 880 aa4.1□□□□□ -1.75
VPS13A-208ENST00000423463 AVENQ9NQS1 362 aaPredicted RBP4.1□□□□□ -1.75
VPS13A-208ENST00000423463 FHAD1B1AJZ9 1412 aa4.1□□□□□ -1.75
VPS13A-208ENST00000423463 ERICH3Q5RHP9 1530 aa4.1□□□□□ -1.75
VPS13A-208ENST00000423463 ELOA3CA0A087WX78 387 aaPredicted RBP4.09□□□□□ -1.75
VPS13A-208ENST00000423463 ELOA3DA6NLF2 546 aaPredicted RBP4.09□□□□□ -1.75
VPS13A-208ENST00000423463 MMP20O60882 483 aa4.09□□□□□ -1.75
VPS13A-208ENST00000423463 PDGFAP04085 211 aa4.09□□□□□ -1.75
VPS13A-208ENST00000423463 ARHGAP4P98171 946 aa4.09□□□□□ -1.75
VPS13A-208ENST00000423463 ECM1Q16610 540 aa4.09□□□□□ -1.75
VPS13A-208ENST00000423463 ELOA3BQ3SY89 546 aa4.09□□□□□ -1.75
VPS13A-208ENST00000423463 DHX32Q7L7V1 743 aaKnown RBP4.09□□□□□ -1.75
VPS13A-208ENST00000423463 ELOA3Q8NG57 546 aa4.09□□□□□ -1.75
VPS13A-208ENST00000423463 CCER1Q8TC90 406 aaPredicted RBP4.09□□□□□ -1.75
VPS13A-208ENST00000423463 TNFRSF25Q93038 417 aa4.09□□□□□ -1.75
VPS13A-208ENST00000423463 GGNBP2Q9H3C7 697 aa4.09□□□□□ -1.75
VPS13A-208ENST00000423463 DNAJB12Q9NXW2 375 aaKnown RBP4.09□□□□□ -1.75
VPS13A-208ENST00000423463 TMEM63CQ9P1W3 806 aa4.09□□□□□ -1.75
VPS13A-208ENST00000423463 STK17AQ9UEE5 414 aa4.09□□□□□ -1.75
VPS13A-208ENST00000423463 FZD6O60353 706 aa4.09□□□□□ -1.75
VPS13A-208ENST00000423463 ALBP02768 609 aa4.09□□□□□ -1.75
VPS13A-208ENST00000423463 PDIA4P13667 645 aaKnown RBP4.09□□□□□ -1.75
VPS13A-208ENST00000423463 PDE4CQ08493 712 aa4.09□□□□□ -1.75
VPS13A-208ENST00000423463 SF3B2Q13435 895 aaKnown RBP4.09□□□□□ -1.75
VPS13A-208ENST00000423463 NUDT8Q8WV74 236 aa4.09□□□□□ -1.75
VPS13A-208ENST00000423463 MDFIQ99750 246 aa4.09□□□□□ -1.75
VPS13A-208ENST00000423463 TNFRSF11AQ9Y6Q6 616 aaPredicted RBP4.09□□□□□ -1.75
VPS13A-208ENST00000423463 CNTNAP5Q8WYK1 1306 aa4.09□□□□□ -1.75
VPS13A-208ENST00000423463 ZBTB42B2RXF5 422 aa4.08□□□□□ -1.76
VPS13A-208ENST00000423463 FAM13AO94988 1023 aa4.08□□□□□ -1.76
Retrieved 100 of 20,778 RNA–protein pairs in 14.1 ms