RNA–Protein interactions for RNA: ENST00000413987.1

SNHG3-201, Transcript of small nucleolar RNA host gene 3, humanhuman

TSL 1 (best)

Gene SNHG3, Length 2,201 nt, Biotype retained intron, Subcellular localisation Cytoplasm .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SNHG3-201ENST00000413987 TMC2Q8TDI7 906 aa11.37□□□□□ -0.59
SNHG3-201ENST00000413987 SH3BP1Q9Y3L3 701 aa11.37□□□□□ -0.59
SNHG3-201ENST00000413987 S100BP04271 92 aaPredicted RBP11.36□□□□□ -0.59
SNHG3-201ENST00000413987 ATP2B1P20020 1258 aa11.36□□□□□ -0.59
SNHG3-201ENST00000413987 MMP14P50281 582 aa11.36□□□□□ -0.59
SNHG3-201ENST00000413987 HDLBPQ00341 1268 aaKnown RBP11.36□□□□□ -0.59
SNHG3-201ENST00000413987 HELBQ8NG08 1087 aaPredicted RBP11.36□□□□□ -0.59
SNHG3-201ENST00000413987 TRIM44Q96DX7 344 aaPredicted RBP11.36□□□□□ -0.59
SNHG3-201ENST00000413987 BTG4Q9NY30 223 aa11.36□□□□□ -0.59
SNHG3-201ENST00000413987 CHMP5Q9NZZ3 219 aa11.36□□□□□ -0.59
SNHG3-201ENST00000413987 DDX11L8A8MPP1 907 aa11.36□□□□□ -0.59
SNHG3-201ENST00000413987 GOLIM4O00461 696 aa11.36□□□□□ -0.59
SNHG3-201ENST00000413987 LMOD1P29536 600 aaPredicted RBP11.36□□□□□ -0.59
SNHG3-201ENST00000413987 LARP1Q6PKG0 1096 aaKnown RBP11.36□□□□□ -0.59
SNHG3-201ENST00000413987 DDX27Q96GQ7 796 aaKnown RBP11.36□□□□□ -0.59
SNHG3-201ENST00000413987 TBC1D32Q96NH3 1257 aa11.36□□□□□ -0.59
SNHG3-201ENST00000413987 COL5A2P05997 1499 aaPredicted RBP11.35□□□□□ -0.59
SNHG3-201ENST00000413987 PDE3AQ14432 1141 aa11.35□□□□□ -0.59
SNHG3-201ENST00000413987 GRPEL1Q9HAV7 217 aa11.35□□□□□ -0.59
SNHG3-201ENST00000413987 MIS18AQ9NYP9 233 aa11.35□□□□□ -0.59
SNHG3-201ENST00000413987 LMO7Q8WWI1 1683 aa11.35□□□□□ -0.59
SNHG3-201ENST00000413987 GOLGA6CA6NDK9 693 aa11.35□□□□□ -0.59
SNHG3-201ENST00000413987 GOLGA6BA6NDN3 693 aa11.35□□□□□ -0.59
SNHG3-201ENST00000413987 GOLGA6DP0CG33 693 aa11.35□□□□□ -0.59
SNHG3-201ENST00000413987 RFC5P40937 340 aa11.35□□□□□ -0.59
SNHG3-201ENST00000413987 CAMK2BQ13554 666 aa11.35□□□□□ -0.59
SNHG3-201ENST00000413987 BMS1Q14692 1282 aaKnown RBP11.35□□□□□ -0.59
SNHG3-201ENST00000413987 PHLDB3Q6NSJ2 640 aa11.35□□□□□ -0.59
SNHG3-201ENST00000413987 TOM1L2Q6ZVM7 507 aa11.35□□□□□ -0.59
SNHG3-201ENST00000413987 TRMT2AQ8IZ69 625 aaKnown RBP11.35□□□□□ -0.59
SNHG3-201ENST00000413987 NGEFQ8N5V2 710 aa11.35□□□□□ -0.59
SNHG3-201ENST00000413987 STAG1Q8WVM7 1258 aa11.35□□□□□ -0.59
SNHG3-201ENST00000413987 GOLGA6AQ9NYA3 693 aa11.35□□□□□ -0.59
SNHG3-201ENST00000413987 PRC1O43663 620 aa11.34□□□□□ -0.59
SNHG3-201ENST00000413987 HSPA1LP34931 641 aa11.34□□□□□ -0.59
SNHG3-201ENST00000413987 CALD1Q05682 793 aaKnown RBP11.34□□□□□ -0.59
SNHG3-201ENST00000413987 ICE2Q659A1 982 aa11.34□□□□□ -0.59
SNHG3-201ENST00000413987 JAZF1Q86VZ6 243 aa11.34□□□□□ -0.59
SNHG3-201ENST00000413987 PANK2Q9BZ23 570 aa11.34□□□□□ -0.59
SNHG3-201ENST00000413987 MEGF6O75095 1541 aa11.34□□□□□ -0.59
SNHG3-201ENST00000413987 SOWAHDA6NJG2 315 aa11.33□□□□□ -0.59
SNHG3-201ENST00000413987 MFSD10Q14728 455 aa11.33□□□□□ -0.59
SNHG3-201ENST00000413987 NBPF20Q3BBV1 942 aa11.33□□□□□ -0.59
SNHG3-201ENST00000413987 WDR63Q8IWG1 891 aa11.33□□□□□ -0.59
SNHG3-201ENST00000413987 IFT57Q9NWB7 429 aa11.33□□□□□ -0.59
SNHG3-201ENST00000413987 DMGDHQ9UI17 866 aaKnown RBP11.33□□□□□ -0.59
SNHG3-201ENST00000413987 FAM208AQ9UK61 1670 aaKnown RBP11.33□□□□□ -0.6
SNHG3-201ENST00000413987 PALM3A6NDB9 673 aaPredicted RBP11.33□□□□□ -0.6
SNHG3-201ENST00000413987 SEC24BO95487 1268 aa11.33□□□□□ -0.6
SNHG3-201ENST00000413987 POU5F1Q01860 360 aaKnown RBP11.33□□□□□ -0.6
SNHG3-201ENST00000413987 RAD51AP2Q09MP3 1159 aa11.33□□□□□ -0.6
SNHG3-201ENST00000413987 FBXO33Q7Z6M2 555 aa11.33□□□□□ -0.6
SNHG3-201ENST00000413987 PCGF5Q86SE9 256 aa11.33□□□□□ -0.6
SNHG3-201ENST00000413987 DDX56Q9NY93 547 aaKnown RBP11.33□□□□□ -0.6
SNHG3-201ENST00000413987 TBC1D2BQ9UPU7 963 aa11.33□□□□□ -0.6
SNHG3-201ENST00000413987 EP400Q96L91 3159 aa11.33□□□□□ -0.6
SNHG3-201ENST00000413987 COL22A1Q8NFW1 1626 aaPredicted RBP11.33□□□□□ -0.6
SNHG3-201ENST00000413987 IGHDP01880 384 aa11.32□□□□□ -0.6
SNHG3-201ENST00000413987 TERF1P54274 439 aa11.32□□□□□ -0.6
SNHG3-201ENST00000413987 KRT24Q2M2I5 525 aa11.32□□□□□ -0.6
SNHG3-201ENST00000413987 MAP7D2Q96T17 732 aa11.32□□□□□ -0.6
SNHG3-201ENST00000413987 TINF2Q9BSI4 451 aa11.32□□□□□ -0.6
SNHG3-201ENST00000413987 WDR17Q8IZU2 1322 aa11.32□□□□□ -0.6
SNHG3-201ENST00000413987 ELL2O00472 640 aaPredicted RBP11.32□□□□□ -0.6
SNHG3-201ENST00000413987 BCAR3O75815 825 aa11.32□□□□□ -0.6
SNHG3-201ENST00000413987 EXOSC9Q06265 439 aaKnown RBP11.32□□□□□ -0.6
SNHG3-201ENST00000413987 FILIP1Q7Z7B0 1213 aa11.32□□□□□ -0.6
SNHG3-201ENST00000413987 PAGR1Q9BTK6 254 aa11.32□□□□□ -0.6
SNHG3-201ENST00000413987 INO80BQ9C086 356 aaPredicted RBP11.32□□□□□ -0.6
SNHG3-201ENST00000413987 LGR6Q9HBX8 967 aa11.32□□□□□ -0.6
SNHG3-201ENST00000413987 TCEAL9Q9UHQ7 104 aa11.32□□□□□ -0.6
SNHG3-201ENST00000413987 ZNF530Q6P9A1 599 aaPredicted RBP11.31□□□□□ -0.6
SNHG3-201ENST00000413987 MPRIPQ6WCQ1 1025 aa11.31□□□□□ -0.6
SNHG3-201ENST00000413987 IL17RAQ96F46 866 aa11.31□□□□□ -0.6
SNHG3-201ENST00000413987 MBIPQ9NS73 344 aa11.31□□□□□ -0.6
SNHG3-201ENST00000413987 NCAPD2Q15021 1401 aa11.31□□□□□ -0.6
SNHG3-201ENST00000413987 FECHP22830 423 aa11.31□□□□□ -0.6
SNHG3-201ENST00000413987 HSD3B2P26439 372 aa11.31□□□□□ -0.6
SNHG3-201ENST00000413987 C1orf131Q8NDD1 294 aaKnown RBP11.31□□□□□ -0.6
SNHG3-201ENST00000413987 IL17REQ8NFR9 667 aa11.31□□□□□ -0.6
SNHG3-201ENST00000413987 SETDB1Q15047 1291 aa11.3□□□□□ -0.6
SNHG3-201ENST00000413987 SKOR2Q2VWA4 1001 aaPredicted RBP11.3□□□□□ -0.6
SNHG3-201ENST00000413987 ZNF746Q6NUN9 644 aaPredicted RBP11.3□□□□□ -0.6
SNHG3-201ENST00000413987 GAS2L2Q8NHY3 880 aa11.3□□□□□ -0.6
SNHG3-201ENST00000413987 RAPGEF4Q8WZA2 1011 aa11.3□□□□□ -0.6
SNHG3-201ENST00000413987 RTF1Q92541 710 aaKnown RBP11.3□□□□□ -0.6
SNHG3-201ENST00000413987 MAP3K5Q99683 1374 aa11.3□□□□□ -0.6
SNHG3-201ENST00000413987 GNAT3A8MTJ3 354 aa11.29□□□□□ -0.6
SNHG3-201ENST00000413987 HDAC1Q13547 482 aaPredicted RBP11.29□□□□□ -0.6
SNHG3-201ENST00000413987 TSPYL6Q8N831 410 aa11.29□□□□□ -0.6
SNHG3-201ENST00000413987 SFMBT1Q9UHJ3 866 aa11.29□□□□□ -0.6
SNHG3-201ENST00000413987 GNPATO15228 680 aa11.29□□□□□ -0.6
SNHG3-201ENST00000413987 JDP2Q8WYK2 163 aa11.29□□□□□ -0.6
SNHG3-201ENST00000413987 SCINQ9Y6U3 715 aa11.29□□□□□ -0.6
SNHG3-201ENST00000413987 LRP6O75581 1613 aa11.29□□□□□ -0.6
SNHG3-201ENST00000413987 SCAMP3O14828 347 aaKnown RBP11.28□□□□□ -0.6
SNHG3-201ENST00000413987 DDX46Q7L014 1031 aaKnown RBP11.28□□□□□ -0.6
SNHG3-201ENST00000413987 NT5DC4Q86YG4 428 aa11.28□□□□□ -0.6
SNHG3-201ENST00000413987 MSL3Q8N5Y2 521 aaKnown RBP11.28□□□□□ -0.6
SNHG3-201ENST00000413987 PDILTQ8N807 584 aa11.28□□□□□ -0.6
Retrieved 100 of 20,778 RNA–protein pairs in 49.3 ms