RNA–Protein interactions for RNA: ENST00000412148.5

CCDC88A-203, Transcript of coiled-coil domain containing 88A, humanhuman

TSL 1 (best)

Gene CCDC88A, Length 2,880 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-203ENST00000412148 TYRO3Q06418 890 aa6.8□□□□□ -1.32
CCDC88A-203ENST00000412148 ADCK5Q3MIX3 580 aa6.8□□□□□ -1.32
CCDC88A-203ENST00000412148 FOXD4L5Q5VV16 416 aaPredicted RBP6.8□□□□□ -1.32
CCDC88A-203ENST00000412148 FOXD4L4Q8WXT5 416 aaPredicted RBP6.8□□□□□ -1.32
CCDC88A-203ENST00000412148 MRFAP1L1Q96HT8 127 aa6.8□□□□□ -1.32
CCDC88A-203ENST00000412148 AGXT2Q9BYV1 514 aa6.8□□□□□ -1.32
CCDC88A-203ENST00000412148 TPCN1Q9ULQ1 816 aa6.8□□□□□ -1.32
CCDC88A-203ENST00000412148 C4AP0C0L4 1744 aa6.8□□□□□ -1.32
CCDC88A-203ENST00000412148 C4BP0C0L5 1744 aa6.8□□□□□ -1.32
CCDC88A-203ENST00000412148 PI4KAP2A4QPH2 592 aa6.79□□□□□ -1.32
CCDC88A-203ENST00000412148 NLRP6P59044 892 aa6.79□□□□□ -1.32
CCDC88A-203ENST00000412148 LARP1BQ659C4 914 aaKnown RBP6.79□□□□□ -1.32
CCDC88A-203ENST00000412148 GIMAP6Q6P9H5 292 aa6.79□□□□□ -1.32
CCDC88A-203ENST00000412148 CCDC83Q8IWF9 413 aa6.79□□□□□ -1.32
CCDC88A-203ENST00000412148 PI4KAP1Q8N8J0 262 aa6.79□□□□□ -1.32
CCDC88A-203ENST00000412148 SMARCC2Q8TAQ2 1214 aa6.79□□□□□ -1.32
CCDC88A-203ENST00000412148 TTC12Q9H892 705 aaPredicted RBP6.79□□□□□ -1.32
CCDC88A-203ENST00000412148 BCL2L12Q9HB09 334 aa6.79□□□□□ -1.32
CCDC88A-203ENST00000412148 CHPF2Q9P2E5 772 aa6.79□□□□□ -1.32
CCDC88A-203ENST00000412148 FIBPO43427 364 aa6.79□□□□□ -1.32
CCDC88A-203ENST00000412148 IFIT2P09913 472 aaKnown RBP6.79□□□□□ -1.32
CCDC88A-203ENST00000412148 NAA16Q6N069 864 aaPredicted RBP6.79□□□□□ -1.32
CCDC88A-203ENST00000412148 BLOC1S2Q6QNY1 142 aa6.79□□□□□ -1.32
CCDC88A-203ENST00000412148 CREBRFQ8IUR6 639 aa6.79□□□□□ -1.32
CCDC88A-203ENST00000412148 PALLDQ8WX93 1383 aa6.79□□□□□ -1.32
CCDC88A-203ENST00000412148 PXDNQ92626 1479 aa6.79□□□□□ -1.32
CCDC88A-203ENST00000412148 ECM29Q5VYK3 1845 aa6.79□□□□□ -1.32
CCDC88A-203ENST00000412148 HMGB1P09429 215 aaKnown RBP6.79□□□□□ -1.32
CCDC88A-203ENST00000412148 ZNF75DP51815 510 aa6.79□□□□□ -1.32
CCDC88A-203ENST00000412148 TOB2Q14106 344 aaPredicted RBP6.79□□□□□ -1.32
CCDC88A-203ENST00000412148 SLFNL1Q499Z3 407 aa6.79□□□□□ -1.32
CCDC88A-203ENST00000412148 PLEKHO1Q53GL0 409 aaPredicted RBP6.79□□□□□ -1.32
CCDC88A-203ENST00000412148 DNTTIP2Q5QJE6 756 aaKnown RBP6.79□□□□□ -1.32
CCDC88A-203ENST00000412148 PRPF40BQ6NWY9 871 aaKnown RBP6.79□□□□□ -1.32
CCDC88A-203ENST00000412148 LMOD2Q6P5Q4 547 aa6.79□□□□□ -1.32
CCDC88A-203ENST00000412148 LEO1Q8WVC0 666 aaPredicted RBP6.79□□□□□ -1.32
CCDC88A-203ENST00000412148 GTF3C6Q969F1 213 aa6.79□□□□□ -1.32
CCDC88A-203ENST00000412148 SLC24A3Q9HC58 644 aa6.79□□□□□ -1.32
CCDC88A-203ENST00000412148 CFAP45Q9UL16 551 aa6.79□□□□□ -1.32
CCDC88A-203ENST00000412148 SPG7Q9UQ90 795 aa6.79□□□□□ -1.32
CCDC88A-203ENST00000412148 NWD2Q9ULI1 1742 aa6.78□□□□□ -1.32
CCDC88A-203ENST00000412148 SH3TC1Q8TE82 1336 aa6.78□□□□□ -1.32
CCDC88A-203ENST00000412148 KIF2AO00139 706 aaPredicted RBP6.78□□□□□ -1.32
CCDC88A-203ENST00000412148 GRM8O00222 908 aa6.78□□□□□ -1.32
CCDC88A-203ENST00000412148 SASH1O94885 1247 aa6.78□□□□□ -1.32
CCDC88A-203ENST00000412148 DDX58O95786 925 aaKnown RBP6.78□□□□□ -1.32
CCDC88A-203ENST00000412148 ATP5JP18859 108 aa6.78□□□□□ -1.32
CCDC88A-203ENST00000412148 RESTQ13127 1097 aa6.78□□□□□ -1.32
CCDC88A-203ENST00000412148 THEMISQ8N1K5 641 aaPredicted RBP6.78□□□□□ -1.32
CCDC88A-203ENST00000412148 TNMDQ9H2S6 317 aa6.78□□□□□ -1.32
CCDC88A-203ENST00000412148 COPRSQ9NQ92 184 aa6.78□□□□□ -1.32
CCDC88A-203ENST00000412148 DDX21Q9NR30 783 aaKnown RBP eCLIP6.78□□□□□ -1.32
CCDC88A-203ENST00000412148 PYCARDQ9ULZ3 195 aa6.78□□□□□ -1.32
CCDC88A-203ENST00000412148 RNMTO43148 476 aaKnown RBP6.78□□□□□ -1.32
CCDC88A-203ENST00000412148 KAZALD1Q96I82 304 aa6.78□□□□□ -1.32
CCDC88A-203ENST00000412148 BPIFA3Q9BQP9 254 aa6.78□□□□□ -1.32
CCDC88A-203ENST00000412148 CBX8Q9HC52 389 aa6.78□□□□□ -1.32
CCDC88A-203ENST00000412148 FAM53CQ9NYF3 392 aa6.78□□□□□ -1.32
CCDC88A-203ENST00000412148 RCOR1Q9UKL0 485 aa6.78□□□□□ -1.32
CCDC88A-203ENST00000412148 SETD1BQ9UPS6 1966 aaKnown RBP6.77□□□□□ -1.33
CCDC88A-203ENST00000412148 RIOK3O14730 519 aaKnown RBP6.77□□□□□ -1.33
CCDC88A-203ENST00000412148 TAF5LO75529 589 aa6.77□□□□□ -1.33
CCDC88A-203ENST00000412148 EVCP57679 992 aa6.77□□□□□ -1.33
CCDC88A-203ENST00000412148 GABPB1Q06547 395 aaPredicted RBP6.77□□□□□ -1.33
CCDC88A-203ENST00000412148 NMIQ13287 307 aaPredicted RBP6.77□□□□□ -1.33
CCDC88A-203ENST00000412148 RABL6Q3YEC7 729 aaPredicted RBP6.77□□□□□ -1.33
CCDC88A-203ENST00000412148 ZSCAN25Q6NSZ9 544 aa6.77□□□□□ -1.33
CCDC88A-203ENST00000412148 NOL8Q76FK4 1167 aaKnown RBP6.77□□□□□ -1.33
CCDC88A-203ENST00000412148 CDC37L1Q7L3B6 337 aa6.77□□□□□ -1.33
CCDC88A-203ENST00000412148 SPATA32Q96LK8 384 aa6.77□□□□□ -1.33
CCDC88A-203ENST00000412148 OGFRQ9NZT2 677 aa6.77□□□□□ -1.33
CCDC88A-203ENST00000412148 CGNQ9P2M7 1197 aaKnown RBP6.77□□□□□ -1.33
CCDC88A-203ENST00000412148 SALL1Q9NSC2 1324 aa6.77□□□□□ -1.33
CCDC88A-203ENST00000412148 BTBD11A6QL63 1104 aa6.77□□□□□ -1.33
CCDC88A-203ENST00000412148 LIG1P18858 919 aa6.77□□□□□ -1.33
CCDC88A-203ENST00000412148 IQCB1Q15051 598 aa6.77□□□□□ -1.33
CCDC88A-203ENST00000412148 TAF3Q5VWG9 929 aa6.77□□□□□ -1.33
CCDC88A-203ENST00000412148 NYAP1Q6ZVC0 841 aa6.77□□□□□ -1.33
CCDC88A-203ENST00000412148 MAP3K2Q9Y2U5 619 aa6.77□□□□□ -1.33
CCDC88A-203ENST00000412148 PFKFB2O60825 505 aa6.76□□□□□ -1.33
CCDC88A-203ENST00000412148 AACSQ86V21 672 aa6.76□□□□□ -1.33
CCDC88A-203ENST00000412148 EAF2Q96CJ1 260 aaPredicted RBP6.76□□□□□ -1.33
CCDC88A-203ENST00000412148 ZNF830Q96NB3 372 aaPredicted RBP6.76□□□□□ -1.33
CCDC88A-203ENST00000412148 GPBP1L1Q9HC44 474 aaPredicted RBP6.76□□□□□ -1.33
CCDC88A-203ENST00000412148 GPR108Q9NPR9 543 aa6.76□□□□□ -1.33
CCDC88A-203ENST00000412148 C9orf78Q9NZ63 289 aaPredicted RBP6.76□□□□□ -1.33
CCDC88A-203ENST00000412148 IMPACTQ9P2X3 320 aa6.76□□□□□ -1.33
CCDC88A-203ENST00000412148 ARAP2Q8WZ64 1704 aa6.76□□□□□ -1.33
CCDC88A-203ENST00000412148 CHD4Q14839 1912 aa6.76□□□□□ -1.33
CCDC88A-203ENST00000412148 VPS37CA5D8V6 355 aaPredicted RBP6.76□□□□□ -1.33
CCDC88A-203ENST00000412148 ADD1P35611 737 aaKnown RBP6.76□□□□□ -1.33
CCDC88A-203ENST00000412148 TEFQ10587 303 aa6.76□□□□□ -1.33
CCDC88A-203ENST00000412148 G3BP1Q13283 466 aaKnown RBP eCLIP6.76□□□□□ -1.33
CCDC88A-203ENST00000412148 ANO6Q4KMQ2 910 aa6.76□□□□□ -1.33
CCDC88A-203ENST00000412148 NBPF6Q5VWK0 638 aa6.76□□□□□ -1.33
CCDC88A-203ENST00000412148 LARP1Q6PKG0 1096 aaKnown RBP6.76□□□□□ -1.33
CCDC88A-203ENST00000412148 ABTB2Q8N961 1025 aa6.76□□□□□ -1.33
CCDC88A-203ENST00000412148 PGBD1Q96JS3 809 aa6.76□□□□□ -1.33
CCDC88A-203ENST00000412148 NBPF4Q96M43 638 aa6.76□□□□□ -1.33
CCDC88A-203ENST00000412148 OSBPL5Q9H0X9 879 aaPredicted RBP6.76□□□□□ -1.33
Retrieved 100 of 20,778 RNA–protein pairs in 54.9 ms