RNA–Protein interactions for RNA: ENST00000409809.5

COL6A3-206, Transcript of collagen type VI alpha 3 chain, humanhuman

TSL 5 BASIC

Gene COL6A3, Length 8,916 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3-206ENST00000409809 MTMR3Q13615 1198 aa14.66□□□□□ -0.06
COL6A3-206ENST00000409809 PHLDB3Q6NSJ2 640 aa14.66□□□□□ -0.06
COL6A3-206ENST00000409809 INTS4Q96HW7 963 aaKnown RBP14.66□□□□□ -0.06
COL6A3-206ENST00000409809 TRIM4Q9C037 500 aa14.66□□□□□ -0.06
COL6A3-206ENST00000409809 ZMYM3Q14202 1370 aa14.66□□□□□ -0.06
COL6A3-206ENST00000409809 MPHOSPH8Q99549 860 aa14.66□□□□□ -0.06
COL6A3-206ENST00000409809 NUF2Q9BZD4 464 aa14.66□□□□□ -0.06
COL6A3-206ENST00000409809 SEC63Q9UGP8 760 aaKnown RBP14.66□□□□□ -0.06
COL6A3-206ENST00000409809 EFCAB13Q8IY85 973 aa14.66□□□□□ -0.06
COL6A3-206ENST00000409809 GPR161Q8N6U8 529 aaKnown RBP14.66□□□□□ -0.06
COL6A3-206ENST00000409809 ARMC9Q7Z3E5 817 aa14.65□□□□□ -0.06
COL6A3-206ENST00000409809 ATP8B1O43520 1251 aa14.65□□□□□ -0.06
COL6A3-206ENST00000409809 BRD3Q15059 726 aa14.65□□□□□ -0.06
COL6A3-206ENST00000409809 MPNDQ8N594 471 aa14.65□□□□□ -0.06
COL6A3-206ENST00000409809 DRC1Q96MC2 740 aa14.65□□□□□ -0.06
COL6A3-206ENST00000409809 NPHP3Q7Z494 1330 aa14.65□□□□□ -0.06
COL6A3-206ENST00000409809 EVI5O60447 810 aa14.65□□□□□ -0.06
COL6A3-206ENST00000409809 HCLS1P14317 486 aaPredicted RBP14.65□□□□□ -0.06
COL6A3-206ENST00000409809 CEP104O60308 925 aa14.64□□□□□ -0.07
COL6A3-206ENST00000409809 CCDC26Q8TAB7 109 aa14.64□□□□□ -0.07
COL6A3-206ENST00000409809 ERBINQ96RT1 1412 aa14.64□□□□□ -0.07
COL6A3-206ENST00000409809 ZSCAN22P10073 491 aaPredicted RBP14.64□□□□□ -0.07
COL6A3-206ENST00000409809 SSFA2P28290 1259 aa14.64□□□□□ -0.07
COL6A3-206ENST00000409809 DDX27Q96GQ7 796 aaKnown RBP14.64□□□□□ -0.07
COL6A3-206ENST00000409809 MACROD2A1Z1Q3 448 aa14.64□□□□□ -0.07
COL6A3-206ENST00000409809 TSKSQ9UJT2 592 aa14.64□□□□□ -0.07
COL6A3-206ENST00000409809 AKR1B10O60218 316 aa14.64□□□□□ -0.07
COL6A3-206ENST00000409809 RAB3GAP1Q15042 981 aa14.64□□□□□ -0.07
COL6A3-206ENST00000409809 MLECQ14165 292 aa14.64□□□□□ -0.07
COL6A3-206ENST00000409809 CEP85LQ5SZL2 805 aa14.64□□□□□ -0.07
COL6A3-206ENST00000409809 IFT20Q8IY31 132 aa14.64□□□□□ -0.07
COL6A3-206ENST00000409809 ZEB2O60315 1214 aa14.64□□□□□ -0.07
COL6A3-206ENST00000409809 PPP1R2P41236 205 aa14.64□□□□□ -0.07
COL6A3-206ENST00000409809 MTIF2P46199 727 aaKnown RBP14.64□□□□□ -0.07
COL6A3-206ENST00000409809 PPP2R5EQ16537 467 aa14.64□□□□□ -0.07
COL6A3-206ENST00000409809 VEZTQ9HBM0 779 aa14.64□□□□□ -0.07
COL6A3-206ENST00000409809 ZSCAN26Q16670 478 aa14.64□□□□□ -0.07
COL6A3-206ENST00000409809 RALGAPBQ86X10 1494 aa14.63□□□□□ -0.07
COL6A3-206ENST00000409809 NBPF7P0C2Y1 421 aaPredicted RBP14.63□□□□□ -0.07
COL6A3-206ENST00000409809 RNF41Q9H4P4 317 aaPredicted RBP14.63□□□□□ -0.07
COL6A3-206ENST00000409809 TRAK1Q9UPV9 953 aa14.63□□□□□ -0.07
COL6A3-206ENST00000409809 SMC5Q8IY18 1101 aa14.63□□□□□ -0.07
COL6A3-206ENST00000409809 ACTN4O43707 911 aaKnown RBP14.63□□□□□ -0.07
COL6A3-206ENST00000409809 STK3Q13188 491 aa14.63□□□□□ -0.07
COL6A3-206ENST00000409809 ZNF526Q8TF50 670 aaPredicted RBP14.63□□□□□ -0.07
COL6A3-206ENST00000409809 TTF2Q9UNY4 1162 aaKnown RBP14.63□□□□□ -0.07
COL6A3-206ENST00000409809 ANKRD50Q9ULJ7 1429 aa14.63□□□□□ -0.07
COL6A3-206ENST00000409809 CC2D2AQ9P2K1 1620 aa14.63□□□□□ -0.07
COL6A3-206ENST00000409809 CHMP4BP1P59074 171 aa14.63□□□□□ -0.07
COL6A3-206ENST00000409809 PPP2R3AQ06190 1150 aa14.63□□□□□ -0.07
COL6A3-206ENST00000409809 RFC1P35251 1148 aaPredicted RBP14.63□□□□□ -0.07
COL6A3-206ENST00000409809 RAB11FIP4Q86YS3 637 aa14.63□□□□□ -0.07
COL6A3-206ENST00000409809 PLCD3Q8N3E9 789 aa14.63□□□□□ -0.07
COL6A3-206ENST00000409809 DHX37Q8IY37 1157 aaKnown RBP14.62□□□□□ -0.07
COL6A3-206ENST00000409809 CKAP2LQ8IYA6 745 aa14.62□□□□□ -0.07
COL6A3-206ENST00000409809 TCP11L1Q9NUJ3 509 aa14.62□□□□□ -0.07
COL6A3-206ENST00000409809 MCUR1Q96AQ8 359 aa14.62□□□□□ -0.07
COL6A3-206ENST00000409809 CSRNP2Q9H175 543 aa14.62□□□□□ -0.07
COL6A3-206ENST00000409809 BICDL2A1A5D9 508 aa14.62□□□□□ -0.07
COL6A3-206ENST00000409809 EIF2AQ9BY44 585 aaKnown RBP14.62□□□□□ -0.07
COL6A3-206ENST00000409809 ARHGAP5Q13017 1502 aa14.62□□□□□ -0.07
COL6A3-206ENST00000409809 KIAA1107Q9UPP5 1409 aa14.62□□□□□ -0.07
COL6A3-206ENST00000409809 N4BP3O15049 544 aa14.62□□□□□ -0.07
COL6A3-206ENST00000409809 MGEA5O60502 916 aa14.62□□□□□ -0.07
COL6A3-206ENST00000409809 AMOTQ4VCS5 1084 aa14.62□□□□□ -0.07
COL6A3-206ENST00000409809 KIF6Q6ZMV9 814 aa14.62□□□□□ -0.07
COL6A3-206ENST00000409809 HIP1RO75146 1068 aa14.62□□□□□ -0.07
COL6A3-206ENST00000409809 SLFN5Q08AF3 891 aa14.62□□□□□ -0.07
COL6A3-206ENST00000409809 ANO6Q4KMQ2 910 aa14.62□□□□□ -0.07
COL6A3-206ENST00000409809 ANKRD24Q8TF21 1146 aa14.62□□□□□ -0.07
COL6A3-206ENST00000409809 TBC1D31Q96DN5 1066 aa14.62□□□□□ -0.07
COL6A3-206ENST00000409809 CALML4Q96GE6 196 aa14.62□□□□□ -0.07
COL6A3-206ENST00000409809 LRRD1A4D1F6 860 aa14.61□□□□□ -0.07
COL6A3-206ENST00000409809 IKQ13123 557 aaPredicted RBP14.61□□□□□ -0.07
COL6A3-206ENST00000409809 EIF2AK4Q9P2K8 1649 aaKnown RBP14.61□□□□□ -0.07
COL6A3-206ENST00000409809 PAXIP1Q6ZW49 1069 aaPredicted RBP14.61□□□□□ -0.07
COL6A3-206ENST00000409809 PTPRCP08575 1304 aa14.61□□□□□ -0.07
COL6A3-206ENST00000409809 CAMSAP2Q08AD1 1489 aa14.61□□□□□ -0.07
COL6A3-206ENST00000409809 DNMBPQ6XZF7 1577 aa14.61□□□□□ -0.07
COL6A3-206ENST00000409809 TPD52P55327 224 aaPredicted RBP14.61□□□□□ -0.07
COL6A3-206ENST00000409809 PPP4R3AQ6IN85 833 aa14.61□□□□□ -0.07
COL6A3-206ENST00000409809 GOLGA6BA6NDN3 693 aa14.61□□□□□ -0.07
COL6A3-206ENST00000409809 IFT140Q96RY7 1462 aa14.61□□□□□ -0.07
COL6A3-206ENST00000409809 NOP2P46087 812 aaKnown RBP14.61□□□□□ -0.07
COL6A3-206ENST00000409809 CWC27Q6UX04 472 aaKnown RBP14.61□□□□□ -0.07
COL6A3-206ENST00000409809 KDM4AO75164 1064 aa14.61□□□□□ -0.07
COL6A3-206ENST00000409809 AFAP1L2Q8N4X5 818 aa14.61□□□□□ -0.07
COL6A3-206ENST00000409809 ZHX3Q9H4I2 956 aa14.6□□□□□ -0.07
COL6A3-206ENST00000409809 PABPN1LA6NDY0 278 aaKnown RBP14.6□□□□□ -0.07
COL6A3-206ENST00000409809 TAF7Q15545 349 aaPredicted RBP14.6□□□□□ -0.07
COL6A3-206ENST00000409809 SPAG5Q96R06 1193 aa14.6□□□□□ -0.07
COL6A3-206ENST00000409809 CFTRP13569 1480 aa14.6□□□□□ -0.07
COL6A3-206ENST00000409809 RNF8O76064 485 aa14.6□□□□□ -0.07
COL6A3-206ENST00000409809 ZNF500O60304 480 aaPredicted RBP14.6□□□□□ -0.07
COL6A3-206ENST00000409809 HVCN1Q96D96 273 aa14.6□□□□□ -0.07
COL6A3-206ENST00000409809 AACSQ86V21 672 aa14.6□□□□□ -0.07
COL6A3-206ENST00000409809 SYKP43405 635 aa14.6□□□□□ -0.07
COL6A3-206ENST00000409809 APBA1Q02410 837 aa14.59□□□□□ -0.07
COL6A3-206ENST00000409809 HDAC1Q13547 482 aaPredicted RBP14.59□□□□□ -0.07
COL6A3-206ENST00000409809 EVCP57679 992 aa14.59□□□□□ -0.07
Retrieved 100 of 20,778 RNA–protein pairs in 34.7 ms