RNA–Protein interactions for RNA: ENST00000403076.5

SDC1-203, Transcript of syndecan 1, humanhuman

TSL 1 (best) BASIC

Gene SDC1, Length 1,523 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SDC1-203ENST00000403076 SSH3Q8TE77 659 aa22.48■■□□□ 1.19
SDC1-203ENST00000403076 CCDC57Q2TAC2 916 aa22.47■■□□□ 1.19
SDC1-203ENST00000403076 CASZ1Q86V15 1759 aa22.47■■□□□ 1.19
SDC1-203ENST00000403076 IFIT5Q13325 482 aaKnown RBP22.47■■□□□ 1.19
SDC1-203ENST00000403076 POLA2Q14181 598 aa22.47■■□□□ 1.19
SDC1-203ENST00000403076 FAM161AQ3B820 660 aa22.47■■□□□ 1.19
SDC1-203ENST00000403076 SF3B3Q15393 1217 aaKnown RBP22.46■■□□□ 1.19
SDC1-203ENST00000403076 TAF7LQ5H9L4 462 aa22.46■■□□□ 1.19
SDC1-203ENST00000403076 C3orf67Q6ZVT6 689 aa22.46■■□□□ 1.19
SDC1-203ENST00000403076 GREM2Q9H772 168 aa22.46■■□□□ 1.19
SDC1-203ENST00000403076 DDX60Q8IY21 1712 aaKnown RBP22.45■■□□□ 1.18
SDC1-203ENST00000403076 ANKRD18BA2A2Z9 1011 aa22.45■■□□□ 1.18
SDC1-203ENST00000403076 BRIP1Q9BX63 1249 aa22.45■■□□□ 1.18
SDC1-203ENST00000403076 SURF6O75683 361 aaKnown RBP22.44■■□□□ 1.18
SDC1-203ENST00000403076 ITGA6P23229 1130 aa22.44■■□□□ 1.18
SDC1-203ENST00000403076 MYH3P11055 1940 aa22.43■■□□□ 1.18
SDC1-203ENST00000403076 PDE6BP35913 854 aa22.43■■□□□ 1.18
SDC1-203ENST00000403076 CENPQQ7L2Z9 268 aaPredicted RBP22.43■■□□□ 1.18
SDC1-203ENST00000403076 PA2G4Q9UQ80 394 aaKnown RBP22.43■■□□□ 1.18
SDC1-203ENST00000403076 LAMB2P55268 1798 aa22.43■■□□□ 1.18
SDC1-203ENST00000403076 RIC1Q4ADV7 1423 aa22.43■■□□□ 1.18
SDC1-203ENST00000403076 OS9Q13438 667 aaPredicted RBP22.42■■□□□ 1.18
SDC1-203ENST00000403076 KLHDC4Q8TBB5 520 aa22.42■■□□□ 1.18
SDC1-203ENST00000403076 RPGRQ92834 1020 aaKnown RBP22.42■■□□□ 1.18
SDC1-203ENST00000403076 DCTPP1Q9H773 170 aa22.42■■□□□ 1.18
SDC1-203ENST00000403076 NRXN2Q9P2S2 1712 aa22.42■■□□□ 1.18
SDC1-203ENST00000403076 RFX5P48382 616 aaPredicted RBP22.41■■□□□ 1.18
SDC1-203ENST00000403076 G3BP1Q13283 466 aaKnown RBP eCLIP22.41■■□□□ 1.18
SDC1-203ENST00000403076 DDX46Q7L014 1031 aaKnown RBP22.41■■□□□ 1.18
SDC1-203ENST00000403076 GCC1Q96CN9 775 aa22.41■■□□□ 1.18
SDC1-203ENST00000403076 ZNF594Q96JF6 807 aaPredicted RBP22.41■■□□□ 1.18
SDC1-203ENST00000403076 SIL1Q9H173 461 aa22.41■■□□□ 1.18
SDC1-203ENST00000403076 SEC31BQ9NQW1 1179 aa22.41■■□□□ 1.18
SDC1-203ENST00000403076 EXOC6BQ9Y2D4 811 aa22.41■■□□□ 1.18
SDC1-203ENST00000403076 PTPN12Q05209 780 aaKnown RBP22.41■■□□□ 1.18
SDC1-203ENST00000403076 HSP90AB4PQ58FF6 505 aa22.41■■□□□ 1.18
SDC1-203ENST00000403076 COPRSQ9NQ92 184 aa22.41■■□□□ 1.18
SDC1-203ENST00000403076 APBB1O00213 710 aa22.4■■□□□ 1.18
SDC1-203ENST00000403076 CDC5LQ99459 802 aaKnown RBP22.4■■□□□ 1.18
SDC1-203ENST00000403076 SPON1Q9HCB6 807 aa22.4■■□□□ 1.18
SDC1-203ENST00000403076 RTL9Q8NET4 1388 aa22.4■■□□□ 1.18
SDC1-203ENST00000403076 RBM17Q96I25 401 aaKnown RBP22.39■■□□□ 1.17
SDC1-203ENST00000403076 ZBTB47Q9UFB7 747 aaPredicted RBP22.39■■□□□ 1.17
SDC1-203ENST00000403076 KDM2BQ8NHM5 1336 aa22.38■■□□□ 1.17
SDC1-203ENST00000403076 KLRG2A4D1S0 409 aaPredicted RBP22.38■■□□□ 1.17
SDC1-203ENST00000403076 IGHMBP2P38935 993 aaKnown RBP22.38■■□□□ 1.17
SDC1-203ENST00000403076 SMC5Q8IY18 1101 aa22.38■■□□□ 1.17
SDC1-203ENST00000403076 MPHOSPH8Q99549 860 aa22.38■■□□□ 1.17
SDC1-203ENST00000403076 NOP58Q9Y2X3 529 aaKnown RBP22.38■■□□□ 1.17
SDC1-203ENST00000403076 TNRC6CQ9HCJ0 1690 aaKnown RBP22.38■■□□□ 1.17
SDC1-203ENST00000403076 CRY2Q49AN0 593 aa22.37■■□□□ 1.17
SDC1-203ENST00000403076 LDHAL6AQ6ZMR3 332 aa22.37■■□□□ 1.17
SDC1-203ENST00000403076 C2CD5Q86YS7 1000 aa22.37■■□□□ 1.17
SDC1-203ENST00000403076 ANKRD18AQ8IVF6 992 aa22.37■■□□□ 1.17
SDC1-203ENST00000403076 BCL11AQ9H165 835 aa22.37■■□□□ 1.17
SDC1-203ENST00000403076 H0YIN7 160 aa22.36■■□□□ 1.17
SDC1-203ENST00000403076 RAB11FIP3O75154 756 aa22.36■■□□□ 1.17
SDC1-203ENST00000403076 CNNM1Q9NRU3 951 aa22.36■■□□□ 1.17
SDC1-203ENST00000403076 PPP1R1BQ9UD71 204 aaPredicted RBP22.36■■□□□ 1.17
SDC1-203ENST00000403076 EYA2O00167 538 aa22.36■■□□□ 1.17
SDC1-203ENST00000403076 NPR1P16066 1061 aa22.36■■□□□ 1.17
SDC1-203ENST00000403076 PTGER2P43116 358 aa22.36■■□□□ 1.17
SDC1-203ENST00000403076 ANKRD45Q5TZF3 282 aa22.36■■□□□ 1.17
SDC1-203ENST00000403076 KLHL34Q8N239 644 aa22.36■■□□□ 1.17
SDC1-203ENST00000403076 SGIP1Q9BQI5 828 aa22.36■■□□□ 1.17
SDC1-203ENST00000403076 PDZRN3Q9UPQ7 1066 aa22.36■■□□□ 1.17
SDC1-203ENST00000403076 RPS8P62241 208 aaKnown RBP22.35■■□□□ 1.17
SDC1-203ENST00000403076 ERC1Q8IUD2 1116 aa22.35■■□□□ 1.17
SDC1-203ENST00000403076 CELF1Q92879 486 aaKnown RBP22.35■■□□□ 1.17
SDC1-203ENST00000403076 PUS3Q9BZE2 481 aaKnown RBP22.35■■□□□ 1.17
SDC1-203ENST00000403076 FBXO3Q9UK99 471 aa22.35■■□□□ 1.17
SDC1-203ENST00000403076 C10orf71Q711Q0 1435 aa22.34■■□□□ 1.17
SDC1-203ENST00000403076 SRGNP10124 158 aa22.34■■□□□ 1.17
SDC1-203ENST00000403076 LRRC24Q50LG9 513 aa22.34■■□□□ 1.17
SDC1-203ENST00000403076 ZNF622Q969S3 477 aaKnown RBP eCLIP22.34■■□□□ 1.17
SDC1-203ENST00000403076 ANKRD31Q8N7Z5 1873 aa22.34■■□□□ 1.17
SDC1-203ENST00000403076 CIAO1O76071 339 aa22.33■■□□□ 1.17
SDC1-203ENST00000403076 HOXA10P31260 410 aaPredicted RBP22.33■■□□□ 1.17
SDC1-203ENST00000403076 IL15P40933 162 aaPredicted RBP22.33■■□□□ 1.17
SDC1-203ENST00000403076 GRAPQ13588 217 aa22.33■■□□□ 1.17
SDC1-203ENST00000403076 GRAPLQ8TC17 118 aaPredicted RBP22.33■■□□□ 1.17
SDC1-203ENST00000403076 KIF1BPQ96EK5 621 aa22.33■■□□□ 1.17
SDC1-203ENST00000403076 MASTLQ96GX5 879 aa22.33■■□□□ 1.17
SDC1-203ENST00000403076 CRAMP1Q96RY5 1269 aa22.33■■□□□ 1.17
SDC1-203ENST00000403076 LRRCC1Q9C099 1032 aa22.33■■□□□ 1.17
SDC1-203ENST00000403076 CHRNA5P30532 468 aa22.32■■□□□ 1.16
SDC1-203ENST00000403076 ALDH1B1P30837 517 aa22.32■■□□□ 1.16
SDC1-203ENST00000403076 RHPN1Q8TCX5 695 aa22.32■■□□□ 1.16
SDC1-203ENST00000403076 ATG9AQ7Z3C6 839 aa22.31■■□□□ 1.16
SDC1-203ENST00000403076 BSDC1Q9NW68 430 aaPredicted RBP22.31■■□□□ 1.16
SDC1-203ENST00000403076 CEP126Q9P2H0 1117 aa22.31■■□□□ 1.16
SDC1-203ENST00000403076 SMARCA5O60264 1052 aaPredicted RBP22.3■■□□□ 1.16
SDC1-203ENST00000403076 BBOX1O75936 387 aa22.3■■□□□ 1.16
SDC1-203ENST00000403076 NUCB1Q02818 461 aa22.3■■□□□ 1.16
SDC1-203ENST00000403076 METTL24Q5JXM2 366 aa22.3■■□□□ 1.16
SDC1-203ENST00000403076 STYK1Q6J9G0 422 aa22.3■■□□□ 1.16
SDC1-203ENST00000403076 RIPOR2Q9Y4F9 1068 aa22.3■■□□□ 1.16
SDC1-203ENST00000403076 SASH1O94885 1247 aa22.29■■□□□ 1.16
SDC1-203ENST00000403076 TFCP2Q12800 502 aa22.29■■□□□ 1.16
SDC1-203ENST00000403076 CHD1LQ86WJ1 897 aa22.29■■□□□ 1.16
Retrieved 100 of 20,778 RNA–protein pairs in 51.2 ms